Wall clock time and date at job start Tue Mar 31 2020 14:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36002 * 116.99826 * 2 1 4 4 C 1.38663 * 120.04742 * 0.25331 * 3 2 1 5 5 C 1.38228 * 120.09200 * 180.24975 * 4 3 2 6 6 C 1.50702 * 119.91320 * 179.76579 * 5 4 3 7 7 N 1.46903 * 109.47165 * 269.98121 * 6 5 4 8 8 C 1.48532 * 110.99857 * 52.60369 * 7 6 5 9 9 C 1.54943 * 103.22462 * 159.71687 * 8 7 6 10 10 C 1.54596 * 102.92341 * 322.58688 * 9 8 7 11 11 O 1.42900 * 110.38985 * 262.99723 * 10 9 8 12 12 C 1.50687 * 110.30715 * 140.87252 * 10 9 8 13 13 H 1.08012 * 120.00382 * 244.27917 * 12 10 9 14 14 C 1.37879 * 120.00270 * 64.28560 * 12 10 9 15 15 N 1.31514 * 119.99923 * 359.97438 * 14 12 10 16 16 Si 1.86807 * 120.00071 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47046 * 60.00078 * 16 14 12 18 18 H 1.48499 * 109.47093 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47072 * 300.00092 * 16 14 12 20 20 C 1.47903 * 110.99483 * 169.99878 * 7 6 5 21 21 C 1.38229 * 120.17872 * 359.74718 * 5 4 3 22 22 C 1.38667 * 120.08665 * 359.97438 * 21 5 4 23 23 O 1.36004 * 120.04382 * 180.02562 * 22 21 5 24 24 C 1.42892 * 116.99893 * 359.97438 * 23 22 21 25 25 C 1.38977 * 119.91145 * 359.97438 * 22 21 5 26 26 O 1.36093 * 120.08749 * 179.97438 * 25 22 21 27 27 H 1.08995 * 109.47086 * 300.00221 * 1 2 3 28 28 H 1.09003 * 109.46635 * 60.00159 * 1 2 3 29 29 H 1.09001 * 109.47023 * 179.97438 * 1 2 3 30 30 H 1.08009 * 119.95281 * 359.97438 * 4 3 2 31 31 H 1.09007 * 109.46962 * 29.98134 * 6 5 4 32 32 H 1.09001 * 109.47216 * 149.97722 * 6 5 4 33 33 H 1.08996 * 110.66766 * 278.15412 * 8 7 6 34 34 H 1.09005 * 110.67195 * 41.28571 * 8 7 6 35 35 H 1.09000 * 110.72151 * 204.22539 * 9 8 7 36 36 H 1.09001 * 110.87154 * 81.01474 * 9 8 7 37 37 H 0.96700 * 113.99952 * 295.76517 * 11 10 9 38 38 H 0.97000 * 119.99914 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.92258 * 333.50679 * 20 7 6 40 40 H 1.08997 * 109.92052 * 94.80801 * 20 7 6 41 41 H 1.07995 * 119.95430 * 179.97438 * 21 5 4 42 42 H 1.09000 * 109.47268 * 179.97438 * 24 23 22 43 43 H 1.09005 * 109.47231 * 299.99639 * 24 23 22 44 44 H 1.09003 * 109.47423 * 59.99583 * 24 23 22 45 45 H 0.96700 * 114.00052 * 90.00261 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2922 2.3753 0.0053 5 6 1.9187 3.6075 0.0001 6 6 1.0949 4.8694 0.0006 7 7 0.8222 5.2767 -1.3843 8 6 0.2338 4.1566 -2.1624 9 6 -0.4523 4.8736 -3.3523 10 6 -1.0156 6.1587 -2.7033 11 8 -2.3933 5.9838 -2.3666 12 6 -0.8507 7.3309 -3.6358 13 1 -0.2101 8.1554 -3.3589 14 6 -1.5177 7.3513 -4.8423 15 7 -2.2974 6.3473 -5.1797 16 14 -1.3138 8.8048 -5.9979 17 1 0.1159 8.9398 -6.3760 18 1 -2.1295 8.5845 -7.2191 19 1 -1.7652 10.0452 -5.3175 20 6 -0.1761 6.3670 -1.4291 21 6 3.2988 3.6852 -0.0051 22 6 4.0603 2.5264 -0.0047 23 8 5.4181 2.6040 -0.0093 24 6 5.9932 3.9121 -0.0151 25 6 3.4342 1.2857 0.0016 26 8 4.1782 0.1461 0.0016 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2135 2.3188 0.0090 31 1 0.1529 4.6882 0.5183 32 1 1.6434 5.6612 0.5108 33 1 1.0139 3.4831 -2.5171 34 1 -0.4998 3.6161 -1.5642 35 1 -1.2577 4.2618 -3.7587 36 1 0.2728 5.1192 -4.1281 37 1 -2.9707 5.8482 -3.1303 38 1 -2.7663 6.3615 -6.0287 39 1 -0.8182 6.3192 -0.5496 40 1 0.3293 7.3318 -1.4712 41 1 3.7845 4.6498 -0.0096 42 1 7.0802 3.8311 -0.0179 43 1 5.6662 4.4488 -0.9057 44 1 5.6718 4.4542 0.8743 45 1 4.3971 -0.1808 0.8850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592522736.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:22 Heat of formation + Delta-G solvation = -151.889134 kcal Electronic energy + Delta-G solvation = -28323.441122 eV Core-core repulsion = 24306.334370 eV Total energy + Delta-G solvation = -4017.106752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.84151 -40.19076 -39.97721 -38.13006 -37.85571 -36.16847 -34.11825 -32.62747 -30.73785 -30.49715 -29.73336 -28.72632 -27.97444 -26.65422 -25.46981 -23.15137 -22.83593 -21.73148 -21.25620 -19.74807 -19.11715 -18.63625 -18.10865 -17.49886 -17.22087 -16.89209 -16.85343 -16.44616 -16.25775 -16.15749 -15.78142 -15.59017 -15.17915 -14.85580 -14.62324 -14.29873 -13.98195 -13.65664 -13.54287 -13.30034 -13.17193 -13.00048 -12.83218 -12.64407 -12.53291 -12.42547 -12.36873 -12.32163 -12.09705 -12.00928 -11.78018 -11.65794 -11.54854 -11.08099 -10.59978 -10.10555 -9.44607 -9.20086 -9.16250 -8.21003 -6.34447 0.10071 0.31194 1.42851 1.43174 1.50949 1.85851 2.39661 2.45510 2.68726 3.01943 3.16335 3.25239 3.56271 3.88935 3.93156 3.99500 4.17873 4.22453 4.28360 4.31249 4.34730 4.37314 4.41906 4.43029 4.56010 4.61963 4.63913 4.70933 4.74167 4.78040 4.80616 4.95083 5.08055 5.10994 5.23076 5.35421 5.39701 5.49539 5.59872 5.76987 5.94445 6.13163 6.18142 6.20462 6.25624 6.69903 6.88569 7.35540 7.45058 8.84834 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016085 B = 0.003379 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.318472 B = 8284.943714 C = 9205.808196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.319 6.319 3 C 0.134 3.866 4 C -0.224 4.224 5 C -0.009 4.009 6 C 0.083 3.917 7 N -0.509 5.509 8 C 0.051 3.949 9 C -0.112 4.112 10 C 0.228 3.772 11 O -0.601 6.601 12 C -0.555 4.555 13 H 0.056 0.944 14 C 0.028 3.972 15 N -0.916 5.916 16 Si 0.958 3.042 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.273 1.273 20 C 0.062 3.938 21 C -0.208 4.208 22 C 0.134 3.866 23 O -0.320 6.320 24 C 0.017 3.983 25 C 0.019 3.981 26 O -0.488 6.488 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.049 0.951 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.047 0.953 36 H 0.043 0.957 37 H 0.378 0.622 38 H 0.269 0.731 39 H 0.042 0.958 40 H 0.078 0.922 41 H 0.151 0.849 42 H 0.123 0.877 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.475 -9.068 13.395 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.233 6.233 3 C 0.087 3.913 4 C -0.243 4.243 5 C -0.009 4.009 6 C -0.044 4.044 7 N -0.234 5.234 8 C -0.076 4.076 9 C -0.151 4.151 10 C 0.188 3.812 11 O -0.410 6.410 12 C -0.593 4.593 13 H 0.075 0.925 14 C -0.172 4.172 15 N -0.556 5.556 16 Si 0.784 3.216 17 H -0.199 1.199 18 H -0.207 1.207 19 H -0.198 1.198 20 C -0.065 4.065 21 C -0.228 4.228 22 C 0.088 3.912 23 O -0.234 6.234 24 C -0.077 4.077 25 C -0.028 4.028 26 O -0.298 6.298 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.143 0.857 30 H 0.156 0.844 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.228 0.772 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.169 0.831 42 H 0.141 0.859 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 11.277 -9.171 13.046 19.531 hybrid contribution -1.374 0.674 -0.684 1.676 sum 9.903 -8.498 12.362 17.975 Atomic orbital electron populations 1.23380 0.76386 1.05771 1.02116 1.86090 1.23212 1.25682 1.88273 1.19003 0.90789 0.85265 0.96237 1.21099 1.00561 0.91084 1.11574 1.19373 0.93312 0.93795 0.94446 1.21353 0.98333 0.94667 0.90077 1.64932 1.40559 1.06788 1.11084 1.23107 0.96523 0.93240 0.94776 1.22774 0.98380 0.97603 0.96309 1.19587 0.79055 0.91982 0.90549 1.86065 1.20712 1.95446 1.38802 1.21962 1.28393 1.05755 1.03212 0.92549 1.25687 0.94258 0.98419 0.98851 1.69691 1.30193 1.31844 1.23897 0.85608 0.78172 0.79778 0.78037 1.19894 1.20727 1.19796 1.22732 0.91829 0.95119 0.96849 1.21081 0.93607 0.97886 1.10208 1.19022 0.83535 0.92602 0.96070 1.86092 1.16071 1.32994 1.88214 1.23408 1.00247 0.81648 1.02439 1.16898 0.86522 0.84979 1.14390 1.84905 1.71564 1.38885 1.34407 0.91362 0.92747 0.85677 0.84388 0.93300 0.87995 0.91207 0.94052 0.93414 0.93800 0.77172 0.92194 0.94016 0.90369 0.83138 0.85865 0.92341 0.91058 0.74828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.32 -8.16 10.28 -79.63 -0.82 -8.98 16 3 C 0.13 3.67 6.70 22.55 0.15 3.82 16 4 C -0.22 -5.97 7.33 22.37 0.16 -5.81 16 5 C -0.01 -0.23 4.59 -19.87 -0.09 -0.32 16 6 C 0.08 2.37 5.18 85.56 0.44 2.81 16 7 N -0.51 -18.63 5.39 -887.52 -4.78 -23.42 16 8 C 0.05 1.97 4.97 86.65 0.43 2.40 16 9 C -0.11 -5.26 5.50 31.80 0.17 -5.09 16 10 C 0.23 11.29 0.99 -10.66 -0.01 11.28 16 11 O -0.60 -31.23 12.93 -148.98 -1.93 -33.15 16 12 C -0.56 -29.90 8.10 25.60 0.21 -29.69 16 13 H 0.06 3.01 7.34 -2.90 -0.02 2.99 16 14 C 0.03 1.47 5.26 84.66 0.45 1.91 16 15 N -0.92 -49.26 10.88 21.45 0.23 -49.03 16 16 Si 0.96 42.37 29.54 68.60 2.03 44.40 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 C 0.06 2.61 6.17 86.45 0.53 3.15 16 21 C -0.21 -5.30 8.69 22.37 0.19 -5.11 16 22 C 0.13 3.57 6.70 22.55 0.15 3.72 16 23 O -0.32 -7.73 10.28 -79.65 -0.82 -8.55 16 24 C 0.02 0.26 9.81 113.37 1.11 1.37 16 25 C 0.02 0.52 6.73 22.62 0.15 0.67 16 26 O -0.49 -12.90 13.07 -70.46 -0.92 -13.82 16 27 H 0.07 1.07 7.65 -2.39 -0.02 1.05 16 28 H 0.05 1.05 7.67 -2.39 -0.02 1.03 16 29 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.14 3.44 5.61 -2.91 -0.02 3.43 16 31 H 0.05 1.37 7.75 -2.38 -0.02 1.35 16 32 H 0.10 2.51 8.08 -2.39 -0.02 2.49 16 33 H 0.07 2.63 7.73 -2.39 -0.02 2.61 16 34 H 0.04 1.52 7.08 -2.38 -0.02 1.50 16 35 H 0.05 2.35 8.06 -2.39 -0.02 2.33 16 36 H 0.04 2.23 7.85 -2.39 -0.02 2.21 16 37 H 0.38 20.25 7.05 -74.06 -0.52 19.73 16 38 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 39 H 0.04 1.69 7.39 -2.39 -0.02 1.67 16 40 H 0.08 3.29 7.39 -2.39 -0.02 3.27 16 41 H 0.15 3.28 6.29 -2.91 -0.02 3.26 16 42 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 0.96 7.66 -2.38 -0.02 0.94 16 44 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 45 H 0.40 6.68 9.07 -74.06 -0.67 6.01 16 Total: -1.00 -65.15 362.15 -2.00 -67.15 By element: Atomic # 1 Polarization: 39.01 SS G_CDS: -0.16 Total: 38.85 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 5.17 Total: -13.45 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -4.55 Total: -72.44 kcal Atomic # 8 Polarization: -60.02 SS G_CDS: -4.48 Total: -64.50 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -65.15 -2.00 -67.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522736.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.742 kcal (2) G-P(sol) polarization free energy of solvation -65.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds