Wall clock time and date at job start Tue Mar 31 2020 13:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.46998 * 2 1 4 4 C 1.46505 * 119.99812 * 94.89689 * 3 2 1 5 5 C 1.50696 * 109.46940 * 85.02702 * 4 3 2 6 6 H 1.07999 * 120.00361 * 355.28753 * 5 4 3 7 7 C 1.37886 * 119.99939 * 175.28410 * 5 4 3 8 8 N 1.31513 * 119.99845 * 179.72429 * 7 5 4 9 9 Si 1.86799 * 119.99820 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.46913 * 269.72211 * 9 7 5 11 11 H 1.48499 * 109.46875 * 29.72376 * 9 7 5 12 12 H 1.48501 * 109.46647 * 149.72270 * 9 7 5 13 13 C 1.34778 * 120.00161 * 274.90084 * 3 2 1 14 14 O 1.21279 * 120.00083 * 355.39706 * 13 3 2 15 15 C 1.50694 * 120.00068 * 175.40152 * 13 3 2 16 16 H 1.09005 * 109.47164 * 335.76429 * 15 13 3 17 17 C 1.52997 * 109.47240 * 215.76521 * 15 13 3 18 18 C 1.53002 * 109.47401 * 172.68190 * 17 15 13 19 19 H 1.08995 * 109.82346 * 312.40157 * 18 17 15 20 20 C 1.54376 * 109.83239 * 191.50910 * 18 17 15 21 21 C 1.55456 * 102.18766 * 219.18308 * 20 18 17 22 22 C 1.54946 * 100.98731 * 34.03709 * 21 20 18 23 23 O 1.43242 * 109.82810 * 73.28156 * 18 17 15 24 24 C 1.53008 * 109.47424 * 95.76175 * 15 13 3 25 25 F 1.39899 * 109.46608 * 68.66126 * 24 15 13 26 26 F 1.39891 * 109.47294 * 188.66188 * 24 15 13 27 27 F 1.39898 * 109.46813 * 308.66668 * 24 15 13 28 28 H 1.09003 * 109.47594 * 304.99940 * 1 2 3 29 29 H 1.09001 * 109.47222 * 64.99987 * 1 2 3 30 30 H 1.09002 * 109.47162 * 184.99854 * 1 2 3 31 31 H 1.08996 * 109.47292 * 240.00282 * 2 1 3 32 32 H 1.08998 * 109.46985 * 119.99565 * 2 1 3 33 33 H 1.09000 * 109.47384 * 325.02356 * 4 3 2 34 34 H 1.08999 * 109.47077 * 205.02063 * 4 3 2 35 35 H 0.96998 * 120.00154 * 180.27895 * 8 7 5 36 36 H 1.09001 * 109.46814 * 292.67746 * 17 15 13 37 37 H 1.08993 * 109.47344 * 52.67850 * 17 15 13 38 38 H 1.09002 * 110.85155 * 337.32042 * 20 18 17 39 39 H 1.08994 * 110.84701 * 100.93897 * 20 18 17 40 40 H 1.09000 * 111.05280 * 276.12053 * 21 20 18 41 41 H 1.09000 * 111.18034 * 152.00843 * 21 20 18 42 42 H 1.09003 * 110.31014 * 204.68812 * 22 21 20 43 43 H 1.08998 * 110.30615 * 82.52759 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3645 2.0357 1.2642 5 6 3.7823 1.6878 1.6381 6 1 4.3414 0.9839 1.0395 7 6 4.3657 2.2680 2.7445 8 7 5.6011 1.9602 3.0739 9 14 3.3984 3.4850 3.7803 10 1 3.6153 4.8591 3.2609 11 1 1.9526 3.1527 3.7130 12 1 3.8584 3.4103 5.1902 13 6 2.1489 2.0499 -1.1629 14 8 1.9425 1.4828 -2.2149 15 6 2.5515 3.5020 -1.1561 16 1 2.2821 3.9492 -0.1992 17 6 1.8266 4.2376 -2.2848 18 6 2.0910 5.7400 -2.1670 19 1 1.9331 6.0635 -1.1382 20 6 1.1454 6.5138 -3.1105 21 6 2.0729 7.6352 -3.6573 22 6 3.4318 6.8930 -3.7142 23 8 3.4359 6.0294 -2.5663 24 6 4.0634 3.6132 -1.3633 25 9 4.3853 3.2218 -2.6673 26 9 4.4657 4.9376 -1.1612 27 9 4.7215 2.7814 -0.4510 28 1 -0.3634 0.5894 0.8418 29 1 -0.3634 0.4343 -0.9314 30 1 -0.3633 -1.0238 0.0895 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6879 1.6942 2.0475 34 1 2.2735 3.1160 1.1509 35 1 6.0102 2.3653 3.8546 36 1 2.1930 3.8786 -3.2466 37 1 0.7553 4.0504 -2.2113 38 1 0.7941 5.8728 -3.9190 39 1 0.3070 6.9373 -2.5575 40 1 2.1147 8.4792 -2.9687 41 1 1.7588 7.9567 -4.6503 42 1 4.2547 7.6053 -3.6548 43 1 3.5040 6.3058 -4.6297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593416919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:55 Heat of formation + Delta-G solvation = -228.999329 kcal Electronic energy + Delta-G solvation = -30866.298022 eV Core-core repulsion = 26303.990781 eV Total energy + Delta-G solvation = -4562.307241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.14829 -46.67727 -46.48276 -39.81583 -39.12941 -35.51829 -34.07869 -32.64823 -32.13655 -30.85568 -29.11334 -27.63568 -25.36393 -23.89944 -22.70853 -22.12969 -21.58968 -20.72002 -18.68503 -17.87972 -17.38278 -17.23592 -16.91704 -16.68613 -16.20297 -15.86614 -15.46237 -14.45132 -14.40837 -13.89115 -13.72040 -13.59231 -13.45509 -13.36167 -13.22461 -13.04339 -13.01343 -12.75701 -12.65334 -12.55881 -12.46247 -12.25116 -11.90544 -11.75142 -11.61071 -11.50973 -11.19501 -11.11793 -10.99209 -10.90238 -10.76792 -10.58229 -10.47127 -10.28275 -9.54638 -9.48574 -9.28356 -8.65747 -7.88625 -6.15488 -4.14559 2.80605 3.18102 3.23515 3.27364 3.50673 3.74256 3.86033 4.29166 4.36509 4.46093 4.57238 4.69768 4.78284 4.82420 5.06197 5.13509 5.18019 5.28302 5.43090 5.46297 5.51886 5.55194 5.56894 5.63933 5.67038 5.72657 5.74717 5.75773 5.85510 6.00509 6.15787 6.22394 6.26328 6.39972 6.49092 6.60335 7.10688 7.20507 7.43422 7.95907 8.40394 8.65049 8.93314 9.42050 10.97407 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.012656 B = 0.005979 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.797176 B = 4681.845688 C = 5579.335799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.579 5.579 4 C 0.203 3.797 5 C -0.529 4.529 6 H 0.084 0.916 7 C 0.080 3.920 8 N -0.885 5.885 9 Si 0.861 3.139 10 H -0.272 1.272 11 H -0.265 1.265 12 H -0.282 1.282 13 C 0.524 3.476 14 O -0.549 6.549 15 C -0.157 4.157 16 H 0.130 0.870 17 C -0.115 4.115 18 C 0.072 3.928 19 H 0.084 0.916 20 C -0.148 4.148 21 C -0.155 4.155 22 C 0.043 3.957 23 O -0.354 6.354 24 C 0.460 3.540 25 F -0.187 7.187 26 F -0.162 7.162 27 F -0.142 7.142 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.036 0.964 34 H 0.027 0.973 35 H 0.266 0.734 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.160 8.535 -9.597 16.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.309 5.309 4 C 0.083 3.917 5 C -0.567 4.567 6 H 0.102 0.898 7 C -0.124 4.124 8 N -0.523 5.523 9 Si 0.687 3.313 10 H -0.197 1.197 11 H -0.190 1.190 12 H -0.208 1.208 13 C 0.309 3.691 14 O -0.428 6.428 15 C -0.180 4.180 16 H 0.148 0.852 17 C -0.153 4.153 18 C 0.014 3.986 19 H 0.102 0.898 20 C -0.185 4.185 21 C -0.193 4.193 22 C -0.034 4.034 23 O -0.273 6.273 24 C 0.405 3.595 25 F -0.169 7.169 26 F -0.144 7.144 27 F -0.123 7.123 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.894 8.162 -9.864 16.181 hybrid contribution -0.292 0.857 0.731 1.164 sum -10.187 9.019 -9.133 16.387 Atomic orbital electron populations 1.22127 0.96661 1.01611 1.01840 1.21314 0.93246 0.82901 1.03322 1.47959 1.62028 1.13566 1.07336 1.19977 0.97955 0.92683 0.81125 1.21269 0.95735 1.27814 1.11925 0.89831 1.24807 0.94603 0.96122 0.96879 1.69871 1.12710 1.43156 1.26547 0.87090 0.80887 0.82590 0.80700 1.19725 1.18976 1.20754 1.19615 0.78188 0.87164 0.84113 1.90638 1.52114 1.69122 1.30909 1.22655 0.92812 0.97794 1.04710 0.85222 1.21925 1.01010 0.93788 0.98604 1.22856 0.82972 0.93663 0.99111 0.89803 1.23162 0.98542 0.97280 0.99552 1.23274 0.95549 0.98454 1.01981 1.23390 0.97266 0.92622 0.90115 1.88858 1.24493 1.67854 1.46111 1.19842 0.90201 0.75018 0.74476 1.93122 1.94043 1.90955 1.38767 1.93217 1.91818 1.34972 1.94348 1.93560 1.82891 1.70815 1.65035 0.92661 0.92763 0.92022 0.90780 0.89641 0.94600 0.95539 0.92427 0.88949 0.89186 0.90237 0.90002 0.90491 0.90246 0.89986 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 10.20 37.16 0.38 -1.97 16 2 C 0.11 2.02 6.14 -4.04 -0.02 2.00 16 3 N -0.58 -11.65 2.47 -175.06 -0.43 -12.08 16 4 C 0.20 4.40 3.96 -5.19 -0.02 4.38 16 5 C -0.53 -13.81 7.20 -34.44 -0.25 -14.06 16 6 H 0.08 2.48 7.68 -52.49 -0.40 2.07 16 7 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 8 N -0.89 -25.92 13.96 55.43 0.77 -25.15 16 9 Si 0.86 19.68 27.38 -169.99 -4.65 15.02 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.27 -5.62 6.67 56.52 0.38 -5.25 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.52 10.54 6.06 -10.99 -0.07 10.48 16 14 O -0.55 -11.89 16.06 5.56 0.09 -11.80 16 15 C -0.16 -2.86 1.76 -91.77 -0.16 -3.02 16 16 H 0.13 2.25 5.58 -51.93 -0.29 1.96 16 17 C -0.12 -1.69 3.81 -26.73 -0.10 -1.79 16 18 C 0.07 0.93 3.13 -26.01 -0.08 0.85 16 19 H 0.08 1.06 8.03 -51.93 -0.42 0.65 16 20 C -0.15 -1.40 6.54 -24.70 -0.16 -1.56 16 21 C -0.15 -1.36 7.16 -24.40 -0.17 -1.54 16 22 C 0.04 0.48 7.78 38.18 0.30 0.78 16 23 O -0.35 -5.32 6.95 -35.23 -0.24 -5.57 16 24 C 0.46 9.51 2.41 37.16 0.09 9.60 16 25 F -0.19 -3.91 16.21 2.25 0.04 -3.87 16 26 F -0.16 -3.27 13.12 2.25 0.03 -3.24 16 27 F -0.14 -3.49 13.23 2.25 0.03 -3.46 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.34 7.51 -51.93 -0.39 0.95 16 32 H 0.09 1.49 8.03 -51.93 -0.42 1.07 16 33 H 0.04 0.75 7.49 -51.93 -0.39 0.36 16 34 H 0.03 0.56 4.64 -51.93 -0.24 0.32 16 35 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.09 1.47 7.31 -51.93 -0.38 1.09 16 37 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 38 H 0.08 0.72 7.85 -51.93 -0.41 0.31 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 347.53 15.07 5.24 5.24 Total: -1.00 -31.25 347.53 -5.80 -37.06 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.30 Total: 1.65 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -0.37 Total: 6.19 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.34 Total: -37.23 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.16 Total: -17.37 kcal Atomic # 9 Polarization: -10.67 SS G_CDS: 0.10 Total: -10.57 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.65 Total: 15.02 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.25 -5.80 -37.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593416919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.942 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds