Wall clock time and date at job start Tue Mar 31 2020 13:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.46998 * 2 1 4 4 C 1.46505 * 119.99812 * 94.89689 * 3 2 1 5 5 C 1.50696 * 109.46940 * 85.02702 * 4 3 2 6 6 H 1.07999 * 120.00361 * 355.28753 * 5 4 3 7 7 C 1.37886 * 119.99939 * 175.28410 * 5 4 3 8 8 N 1.31513 * 119.99845 * 179.72429 * 7 5 4 9 9 Si 1.86799 * 119.99820 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.46913 * 269.72211 * 9 7 5 11 11 H 1.48499 * 109.46875 * 29.72376 * 9 7 5 12 12 H 1.48501 * 109.46647 * 149.72270 * 9 7 5 13 13 C 1.34778 * 120.00161 * 274.90084 * 3 2 1 14 14 O 1.21279 * 120.00083 * 355.39706 * 13 3 2 15 15 C 1.50694 * 120.00068 * 175.40152 * 13 3 2 16 16 H 1.09005 * 109.47164 * 335.76429 * 15 13 3 17 17 C 1.52997 * 109.47240 * 215.76521 * 15 13 3 18 18 C 1.53002 * 109.47401 * 172.68190 * 17 15 13 19 19 H 1.08995 * 109.82346 * 312.40157 * 18 17 15 20 20 C 1.54376 * 109.83239 * 191.50910 * 18 17 15 21 21 C 1.55456 * 102.18766 * 219.18308 * 20 18 17 22 22 C 1.54946 * 100.98731 * 34.03709 * 21 20 18 23 23 O 1.43242 * 109.82810 * 73.28156 * 18 17 15 24 24 C 1.53008 * 109.47424 * 95.76175 * 15 13 3 25 25 F 1.39899 * 109.46608 * 68.66126 * 24 15 13 26 26 F 1.39891 * 109.47294 * 188.66188 * 24 15 13 27 27 F 1.39898 * 109.46813 * 308.66668 * 24 15 13 28 28 H 1.09003 * 109.47594 * 304.99940 * 1 2 3 29 29 H 1.09001 * 109.47222 * 64.99987 * 1 2 3 30 30 H 1.09002 * 109.47162 * 184.99854 * 1 2 3 31 31 H 1.08996 * 109.47292 * 240.00282 * 2 1 3 32 32 H 1.08998 * 109.46985 * 119.99565 * 2 1 3 33 33 H 1.09000 * 109.47384 * 325.02356 * 4 3 2 34 34 H 1.08999 * 109.47077 * 205.02063 * 4 3 2 35 35 H 0.96998 * 120.00154 * 180.27895 * 8 7 5 36 36 H 1.09001 * 109.46814 * 292.67746 * 17 15 13 37 37 H 1.08993 * 109.47344 * 52.67850 * 17 15 13 38 38 H 1.09002 * 110.85155 * 337.32042 * 20 18 17 39 39 H 1.08994 * 110.84701 * 100.93897 * 20 18 17 40 40 H 1.09000 * 111.05280 * 276.12053 * 21 20 18 41 41 H 1.09000 * 111.18034 * 152.00843 * 21 20 18 42 42 H 1.09003 * 110.31014 * 204.68812 * 22 21 20 43 43 H 1.08998 * 110.30615 * 82.52759 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3645 2.0357 1.2642 5 6 3.7823 1.6878 1.6381 6 1 4.3414 0.9839 1.0395 7 6 4.3657 2.2680 2.7445 8 7 5.6011 1.9602 3.0739 9 14 3.3984 3.4850 3.7803 10 1 3.6153 4.8591 3.2609 11 1 1.9526 3.1527 3.7130 12 1 3.8584 3.4103 5.1902 13 6 2.1489 2.0499 -1.1629 14 8 1.9425 1.4828 -2.2149 15 6 2.5515 3.5020 -1.1561 16 1 2.2821 3.9492 -0.1992 17 6 1.8266 4.2376 -2.2848 18 6 2.0910 5.7400 -2.1670 19 1 1.9331 6.0635 -1.1382 20 6 1.1454 6.5138 -3.1105 21 6 2.0729 7.6352 -3.6573 22 6 3.4318 6.8930 -3.7142 23 8 3.4359 6.0294 -2.5663 24 6 4.0634 3.6132 -1.3633 25 9 4.3853 3.2218 -2.6673 26 9 4.4657 4.9376 -1.1612 27 9 4.7215 2.7814 -0.4510 28 1 -0.3634 0.5894 0.8418 29 1 -0.3634 0.4343 -0.9314 30 1 -0.3633 -1.0238 0.0895 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6879 1.6942 2.0475 34 1 2.2735 3.1160 1.1509 35 1 6.0102 2.3653 3.8546 36 1 2.1930 3.8786 -3.2466 37 1 0.7553 4.0504 -2.2113 38 1 0.7941 5.8728 -3.9190 39 1 0.3070 6.9373 -2.5575 40 1 2.1147 8.4792 -2.9687 41 1 1.7588 7.9567 -4.6503 42 1 4.2547 7.6053 -3.6548 43 1 3.5040 6.3058 -4.6297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593416919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:55 Heat of formation + Delta-G solvation = -248.006682 kcal Electronic energy + Delta-G solvation = -30867.122243 eV Core-core repulsion = 26303.990781 eV Total energy + Delta-G solvation = -4563.131462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.85549 -48.36785 -48.25505 -41.22247 -40.24285 -37.14283 -35.42249 -34.59777 -32.99707 -32.24477 -30.34571 -29.37540 -26.56345 -25.35244 -24.55784 -23.33628 -22.48580 -21.83860 -20.27085 -19.55491 -19.12740 -18.92087 -18.46395 -18.09589 -17.57445 -17.02183 -16.85487 -16.23494 -15.67067 -15.38433 -15.17528 -15.13464 -14.79929 -14.74364 -14.67167 -14.50486 -14.45393 -14.36673 -14.28674 -14.15685 -13.90561 -13.67486 -13.28547 -13.17409 -12.85356 -12.63457 -12.59374 -12.42747 -12.24928 -12.05868 -12.01529 -11.84703 -11.81469 -11.63578 -11.57012 -10.93879 -10.69097 -10.42144 -9.54303 -8.22092 -6.26061 1.19716 1.40709 1.41205 1.50344 2.01233 2.14558 2.38000 2.85766 2.98835 3.06760 3.13482 3.25143 3.54522 3.63790 3.81552 3.96739 4.05339 4.06077 4.22091 4.29370 4.34720 4.37983 4.51584 4.53725 4.66757 4.71721 4.82526 4.83538 4.88753 4.94047 4.96959 5.02994 5.05455 5.12745 5.31010 5.34140 5.46585 5.62352 6.17140 6.19855 6.50090 6.77079 7.05476 7.35056 8.94801 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.012656 B = 0.005979 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.797176 B = 4681.845688 C = 5579.335799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.107 3.893 3 N -0.584 5.584 4 C 0.209 3.791 5 C -0.521 4.521 6 H 0.031 0.969 7 C 0.018 3.982 8 N -0.943 5.943 9 Si 0.926 3.074 10 H -0.265 1.265 11 H -0.228 1.228 12 H -0.287 1.287 13 C 0.519 3.481 14 O -0.567 6.567 15 C -0.151 4.151 16 H 0.141 0.859 17 C -0.107 4.107 18 C 0.066 3.934 19 H 0.088 0.912 20 C -0.140 4.140 21 C -0.145 4.145 22 C 0.031 3.969 23 O -0.390 6.390 24 C 0.454 3.546 25 F -0.192 7.192 26 F -0.158 7.158 27 F -0.172 7.172 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.265 0.735 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.551 10.492 -9.523 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 N -0.313 5.313 4 C 0.087 3.913 5 C -0.559 4.559 6 H 0.050 0.950 7 C -0.180 4.180 8 N -0.583 5.583 9 Si 0.749 3.251 10 H -0.190 1.190 11 H -0.151 1.151 12 H -0.213 1.213 13 C 0.306 3.694 14 O -0.448 6.448 15 C -0.173 4.173 16 H 0.159 0.841 17 C -0.145 4.145 18 C 0.008 3.992 19 H 0.106 0.894 20 C -0.178 4.178 21 C -0.182 4.182 22 C -0.045 4.045 23 O -0.310 6.310 24 C 0.399 3.601 25 F -0.174 7.174 26 F -0.140 7.140 27 F -0.154 7.154 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.132 0.868 38 H 0.103 0.897 39 H 0.123 0.877 40 H 0.102 0.898 41 H 0.119 0.881 42 H 0.104 0.896 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.319 10.109 -9.814 19.388 hybrid contribution 0.890 0.152 0.600 1.084 sum -12.429 10.261 -9.213 18.565 Atomic orbital electron populations 1.22013 0.93430 1.03466 1.01933 1.21504 0.95844 0.81653 1.02533 1.48056 1.61917 1.14427 1.06912 1.19852 0.95320 0.93855 0.82242 1.21352 0.97565 1.26149 1.10858 0.95039 1.25717 0.95479 0.98361 0.98431 1.70056 1.15186 1.45418 1.27596 0.86034 0.81215 0.79768 0.78094 1.19045 1.15060 1.21252 1.19952 0.77735 0.87966 0.83790 1.90622 1.52947 1.69792 1.31416 1.22730 0.90767 0.96978 1.06849 0.84119 1.21985 1.01725 0.94719 0.96096 1.22996 0.83210 0.92630 1.00367 0.89389 1.23162 0.98439 0.97022 0.99139 1.23249 0.93475 0.98085 1.03393 1.23586 0.99282 0.92625 0.88980 1.88798 1.26059 1.68732 1.47376 1.20241 0.91542 0.74632 0.73686 1.93103 1.94254 1.91039 1.39001 1.93223 1.92002 1.34403 1.94323 1.93498 1.83773 1.71876 1.66204 0.91733 0.93222 0.89462 0.92113 0.89991 0.92525 0.93713 0.92622 0.90604 0.86769 0.89730 0.87711 0.89795 0.88104 0.89598 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 10.20 71.98 0.73 -3.18 16 2 C 0.11 3.68 6.14 86.38 0.53 4.21 16 3 N -0.58 -22.99 2.47 -826.17 -2.04 -25.03 16 4 C 0.21 8.69 3.96 85.63 0.34 9.03 16 5 C -0.52 -27.62 7.20 25.60 0.18 -27.43 16 6 H 0.03 1.96 7.68 -2.91 -0.02 1.94 16 7 C 0.02 1.01 5.47 84.66 0.46 1.47 16 8 N -0.94 -57.13 13.96 21.45 0.30 -56.83 16 9 Si 0.93 39.48 27.38 68.60 1.88 41.36 16 10 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 11 H -0.23 -8.31 6.67 99.48 0.66 -7.65 16 12 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 13 C 0.52 20.59 6.06 87.65 0.53 21.12 16 14 O -0.57 -24.45 16.06 -3.03 -0.05 -24.50 16 15 C -0.15 -5.34 1.76 -11.54 -0.02 -5.36 16 16 H 0.14 4.59 5.58 -2.38 -0.01 4.57 16 17 C -0.11 -2.95 3.81 30.59 0.12 -2.84 16 18 C 0.07 1.55 3.13 31.06 0.10 1.64 16 19 H 0.09 1.99 8.03 -2.39 -0.02 1.97 16 20 C -0.14 -2.17 6.54 31.91 0.21 -1.96 16 21 C -0.14 -2.10 7.16 32.11 0.23 -1.87 16 22 C 0.03 0.67 7.78 72.65 0.57 1.23 16 23 O -0.39 -11.33 6.95 -148.98 -1.04 -12.36 16 24 C 0.45 19.00 2.41 71.98 0.17 19.17 16 25 F -0.19 -8.24 16.21 44.97 0.73 -7.51 16 26 F -0.16 -6.39 13.12 44.97 0.59 -5.80 16 27 F -0.17 -8.79 13.23 44.97 0.59 -8.19 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 31 H 0.06 2.23 7.51 -2.39 -0.02 2.21 16 32 H 0.08 2.84 8.03 -2.39 -0.02 2.82 16 33 H 0.06 2.17 7.49 -2.39 -0.02 2.15 16 34 H 0.05 1.74 4.64 -2.39 -0.01 1.73 16 35 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.08 2.35 7.31 -2.39 -0.02 2.33 16 37 H 0.11 2.56 8.10 -2.39 -0.02 2.54 16 38 H 0.08 1.24 7.85 -2.39 -0.02 1.22 16 39 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -70.76 347.53 6.10 -64.66 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.98 Total: 18.96 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 4.15 Total: 15.24 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -1.74 Total: -81.85 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -1.08 Total: -36.86 kcal Atomic # 9 Polarization: -23.42 SS G_CDS: 1.91 Total: -21.51 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.88 Total: 41.36 kcal Total: -70.76 6.10 -64.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593416919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.348 kcal (2) G-P(sol) polarization free energy of solvation -70.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds