Wall clock time and date at job start Tue Mar 31 2020 14:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.34976 * 116.99620 * 2 1 4 4 O 1.21709 * 120.00303 * 0.02562 * 3 2 1 5 5 C 1.41539 * 119.99834 * 180.02562 * 3 2 1 6 6 N 1.38282 * 126.35964 * 0.02951 * 5 3 2 7 7 H 0.96995 * 125.65511 * 0.02562 * 6 5 3 8 8 C 1.35615 * 108.68973 * 179.97438 * 6 5 3 9 9 C 1.50695 * 125.41821 * 180.02562 * 8 6 5 10 10 C 1.35237 * 109.16386 * 359.72489 * 8 6 5 11 11 C 1.38833 * 126.35861 * 180.02562 * 5 3 2 12 12 N 1.39451 * 126.55417 * 0.02578 * 11 5 3 13 13 C 1.34777 * 119.99810 * 179.97438 * 12 11 5 14 14 O 1.21282 * 120.00142 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99986 * 179.97438 * 13 12 11 16 16 H 1.09001 * 109.47087 * 40.00373 * 15 13 12 17 17 N 1.46905 * 109.47121 * 160.00176 * 15 13 12 18 18 C 1.52998 * 109.47064 * 280.00094 * 15 13 12 19 19 C 1.53004 * 109.47139 * 174.99796 * 18 15 13 20 20 C 1.52998 * 109.47139 * 179.97438 * 19 18 15 21 21 C 1.50704 * 109.47225 * 180.02562 * 20 19 18 22 22 H 1.08011 * 119.99666 * 359.97438 * 21 20 19 23 23 C 1.37869 * 120.00104 * 180.02562 * 21 20 19 24 24 N 1.31522 * 119.99806 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00230 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47387 * 89.99946 * 25 23 21 27 27 H 1.48502 * 109.47160 * 209.99716 * 25 23 21 28 28 H 1.48498 * 109.47051 * 329.99793 * 25 23 21 29 29 H 1.08997 * 109.46851 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47068 * 299.99035 * 1 2 3 31 31 H 1.08994 * 109.47612 * 59.99091 * 1 2 3 32 32 H 1.08995 * 109.47450 * 89.97474 * 9 8 6 33 33 H 1.09000 * 109.47170 * 209.97549 * 9 8 6 34 34 H 1.09007 * 109.47050 * 329.97314 * 9 8 6 35 35 H 1.07999 * 126.00734 * 180.30193 * 10 8 6 36 36 H 0.96998 * 120.00480 * 0.02562 * 12 11 5 37 37 H 1.00901 * 110.99869 * 60.00289 * 17 15 13 38 38 H 1.00896 * 110.99543 * 183.95412 * 17 15 13 39 39 H 1.08995 * 109.47368 * 294.99520 * 18 15 13 40 40 H 1.09001 * 109.47446 * 54.99927 * 18 15 13 41 41 H 1.08994 * 109.47287 * 300.00153 * 19 18 15 42 42 H 1.09004 * 109.46568 * 60.00209 * 19 18 15 43 43 H 1.09005 * 109.47356 * 299.99763 * 20 19 18 44 44 H 1.08993 * 109.47108 * 60.00094 * 20 19 18 45 45 H 0.97003 * 119.99323 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2027 0.0000 4 8 1.3788 2.2234 0.0005 5 6 3.4552 1.2768 -0.0005 6 7 4.3322 0.2077 -0.0017 7 1 4.0814 -0.7293 -0.0026 8 6 5.6010 0.6864 -0.0025 9 6 6.8517 -0.1543 -0.0043 10 6 5.5654 2.0383 -0.0080 11 6 4.2185 2.4364 -0.0001 12 7 3.7395 3.7461 0.0014 13 6 4.6043 4.7799 0.0022 14 8 5.7990 4.5711 0.0020 15 6 4.0867 6.1952 0.0033 16 1 3.2226 6.2656 0.6640 17 7 5.1409 7.1017 0.4776 18 6 3.6762 6.5892 -1.4169 19 6 3.0359 7.9786 -1.3958 20 6 2.6260 8.3729 -2.8162 21 6 1.9958 9.7417 -2.7955 22 1 1.8972 10.2767 -1.8624 23 6 1.5443 10.3105 -3.9674 24 7 0.9939 11.5049 -3.9492 25 14 1.7143 9.3849 -5.5810 26 1 0.5022 8.5572 -5.8071 27 1 1.8656 10.3554 -6.6948 28 1 2.9101 8.5064 -5.5241 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 7.1520 -0.3565 -1.0324 33 1 7.6503 0.3814 0.5088 34 1 6.6573 -1.0959 0.5093 35 1 6.4221 2.6960 -0.0145 36 1 2.7841 3.9131 0.0027 37 1 5.9534 7.0549 -0.1188 38 1 4.7987 8.0482 0.5488 39 1 4.5571 6.6049 -2.0586 40 1 2.9590 5.8644 -1.8022 41 1 2.1550 7.9630 -0.7542 42 1 3.7532 8.7034 -1.0107 43 1 3.5072 8.3887 -3.4576 44 1 1.9090 7.6482 -3.2018 45 1 0.6760 11.9049 -4.7738 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594434819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:19 Heat of formation + Delta-G solvation = -119.839404 kcal Electronic energy + Delta-G solvation = -27038.652847 eV Core-core repulsion = 23055.228627 eV Total energy + Delta-G solvation = -3983.424220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.87496 -41.23197 -40.78028 -37.78474 -37.52767 -35.97056 -35.25207 -33.29244 -32.81790 -31.39531 -29.72839 -29.43257 -27.60208 -27.04342 -24.48551 -23.36137 -22.04325 -21.90058 -21.48829 -20.85166 -19.62050 -18.90423 -18.50767 -18.10276 -17.65257 -17.09746 -16.54767 -16.38010 -16.22338 -16.04595 -15.84673 -15.54002 -15.07144 -14.90854 -14.82674 -14.41386 -14.33552 -14.09645 -13.97716 -13.74066 -13.63285 -13.33112 -13.06522 -13.01469 -12.88871 -12.68405 -12.37095 -12.06173 -11.87058 -11.81705 -11.81398 -11.71277 -11.47795 -11.34615 -10.81852 -10.77696 -9.72477 -9.52560 -8.96579 -8.30703 -6.34333 -0.11926 1.28526 1.33622 1.35169 1.46928 1.61318 1.62003 1.84455 2.16838 2.23616 2.34185 3.04783 3.45864 3.62545 3.83491 3.91299 3.92908 4.02662 4.11435 4.29730 4.32047 4.33058 4.44042 4.45543 4.61938 4.69591 4.69865 4.82625 4.85283 4.91662 5.01746 5.08892 5.11910 5.20148 5.25586 5.48716 5.56918 5.62128 5.65484 5.82864 6.01929 6.27195 6.31181 6.48025 6.48323 6.64219 6.74010 6.99068 7.30467 8.85982 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012581 B = 0.002816 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.001053 B = 9939.723844 C =11120.638915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.538 3.462 4 O -0.544 6.544 5 C -0.119 4.119 6 N -0.510 5.510 7 H 0.441 0.559 8 C 0.121 3.879 9 C -0.092 4.092 10 C -0.251 4.251 11 C 0.171 3.829 12 N -0.640 5.640 13 C 0.525 3.475 14 O -0.529 6.529 15 C 0.087 3.913 16 H 0.118 0.882 17 N -0.829 5.829 18 C -0.139 4.139 19 C -0.092 4.092 20 C -0.013 4.013 21 C -0.531 4.531 22 H 0.036 0.964 23 C 0.003 3.997 24 N -0.951 5.951 25 Si 0.949 3.051 26 H -0.268 1.268 27 H -0.284 1.284 28 H -0.249 1.249 29 H 0.136 0.864 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.158 0.842 36 H 0.424 0.576 37 H 0.350 0.650 38 H 0.359 0.641 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.016 0.984 44 H 0.015 0.985 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.845 -32.152 9.378 34.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.389 3.611 4 O -0.436 6.436 5 C -0.229 4.229 6 N -0.112 5.112 7 H 0.283 0.717 8 C -0.001 4.001 9 C -0.149 4.149 10 C -0.276 4.276 11 C 0.065 3.935 12 N -0.285 5.285 13 C 0.313 3.687 14 O -0.404 6.404 15 C -0.029 4.029 16 H 0.135 0.865 17 N -0.362 5.362 18 C -0.179 4.179 19 C -0.130 4.130 20 C -0.051 4.051 21 C -0.569 4.569 22 H 0.054 0.946 23 C -0.194 4.194 24 N -0.592 5.592 25 Si 0.772 3.228 26 H -0.193 1.193 27 H -0.209 1.209 28 H -0.173 1.173 29 H 0.154 0.846 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.176 0.824 36 H 0.263 0.737 37 H 0.164 0.836 38 H 0.175 0.825 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.035 0.965 44 H 0.034 0.966 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.240 -32.398 9.956 34.881 hybrid contribution -1.456 0.802 -1.693 2.373 sum 6.783 -31.597 8.263 33.356 Atomic orbital electron populations 1.23169 0.75034 1.05757 1.02392 1.86125 1.25065 1.31522 1.84620 1.18463 0.87133 0.82186 0.73307 1.90851 1.66303 1.36433 1.50045 1.17375 0.87100 0.87712 1.30732 1.41675 1.04244 1.08422 1.56812 0.71724 1.21183 0.86840 0.93516 0.98584 1.20686 0.90405 0.98902 1.04952 1.21119 0.95301 0.94739 1.16465 1.17752 0.93680 0.83051 0.99023 1.43139 1.11868 1.02983 1.70548 1.21008 0.86067 0.87202 0.74426 1.90566 1.16450 1.85570 1.47770 1.21313 0.96227 0.88551 0.96789 0.86450 1.58670 1.07849 1.12293 1.57392 1.22292 1.01405 0.98309 0.95853 1.21324 0.99733 0.94502 0.97464 1.19538 0.95786 0.94354 0.95404 1.21521 1.38715 1.02268 0.94372 0.94589 1.26009 0.94347 0.95661 1.03344 1.70072 1.42516 1.17508 1.29074 0.85680 0.79921 0.78729 0.78439 1.19286 1.20931 1.17301 0.84634 0.92234 0.92503 0.88509 0.88711 0.88472 0.82411 0.73675 0.83630 0.82471 0.91702 0.91005 0.92303 0.92269 0.96541 0.96616 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.45 113.37 1.18 1.57 16 2 O -0.36 -6.31 10.45 -58.93 -0.62 -6.92 16 3 C 0.54 12.59 7.72 68.63 0.53 13.12 16 4 O -0.54 -15.41 14.74 19.15 0.28 -15.13 16 5 C -0.12 -2.66 6.92 39.08 0.27 -2.39 16 6 N -0.51 -7.39 6.10 -175.16 -1.07 -8.46 16 7 H 0.44 3.38 8.96 -92.71 -0.83 2.55 16 8 C 0.12 1.83 7.11 41.28 0.29 2.12 16 9 C -0.09 -0.56 10.41 71.23 0.74 0.18 16 10 C -0.25 -5.89 9.50 22.12 0.21 -5.68 16 11 C 0.17 4.50 6.91 38.61 0.27 4.77 16 12 N -0.64 -17.46 5.39 -302.69 -1.63 -19.09 16 13 C 0.53 15.24 7.04 87.66 0.62 15.86 16 14 O -0.53 -17.29 13.43 -3.04 -0.04 -17.33 16 15 C 0.09 2.32 3.21 44.17 0.14 2.47 16 16 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 17 N -0.83 -21.85 8.94 -171.79 -1.54 -23.39 16 18 C -0.14 -4.15 4.84 30.59 0.15 -4.01 16 19 C -0.09 -3.39 4.92 30.59 0.15 -3.24 16 20 C -0.01 -0.62 4.04 29.85 0.12 -0.50 16 21 C -0.53 -30.69 9.66 25.60 0.25 -30.44 16 22 H 0.04 2.27 7.99 -2.91 -0.02 2.24 16 23 C 0.00 0.18 5.47 84.65 0.46 0.64 16 24 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 25 Si 0.95 45.03 27.47 68.60 1.88 46.92 16 26 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 27 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 28 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 29 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 31 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 32 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.09 0.56 8.14 -2.39 -0.02 0.55 16 34 H 0.10 0.13 8.14 -2.38 -0.02 0.11 16 35 H 0.16 4.21 5.97 -2.91 -0.02 4.20 16 36 H 0.42 11.22 6.80 -92.71 -0.63 10.59 16 37 H 0.35 9.29 8.58 -89.69 -0.77 8.52 16 38 H 0.36 8.91 7.55 -89.70 -0.68 8.24 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.06 2.11 6.87 -2.39 -0.02 2.09 16 43 H 0.02 0.76 7.20 -2.38 -0.02 0.74 16 44 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 45 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -77.15 376.60 1.06 -76.09 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: -1.90 Total: 32.78 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 5.39 Total: -5.52 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -3.93 Total: -110.88 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -0.37 Total: -39.39 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.92 kcal Total: -77.15 1.06 -76.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594434819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.754 kcal (2) G-P(sol) polarization free energy of solvation -77.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds