Wall clock time and date at job start Tue Mar 31 2020 14:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.34974 * 117.00081 * 2 1 4 4 O 1.21708 * 120.00288 * 0.27725 * 3 2 1 5 5 C 1.41555 * 119.99940 * 180.02562 * 3 2 1 6 6 N 1.38273 * 126.35935 * 0.02618 * 5 3 2 7 7 H 0.97010 * 125.65357 * 359.97438 * 6 5 3 8 8 C 1.35610 * 108.69102 * 179.97438 * 6 5 3 9 9 C 1.50699 * 125.41487 * 179.97438 * 8 6 5 10 10 C 1.35222 * 109.16423 * 359.97438 * 8 6 5 11 11 C 1.38828 * 126.35390 * 179.71303 * 5 3 2 12 12 N 1.39445 * 126.55899 * 0.02616 * 11 5 3 13 13 C 1.34784 * 119.99980 * 179.97438 * 12 11 5 14 14 O 1.21281 * 119.99600 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99966 * 179.97438 * 13 12 11 16 16 H 1.09001 * 109.47000 * 320.00444 * 15 13 12 17 17 N 1.46895 * 109.46948 * 199.99921 * 15 13 12 18 18 C 1.52999 * 109.46743 * 80.00136 * 15 13 12 19 19 C 1.53001 * 109.47072 * 184.99738 * 18 15 13 20 20 C 1.52999 * 109.47072 * 180.02562 * 19 18 15 21 21 C 1.50709 * 109.46892 * 180.02562 * 20 19 18 22 22 H 1.07995 * 120.00152 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99790 * 180.02562 * 21 20 19 24 24 N 1.31517 * 119.99749 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99823 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47659 * 89.99772 * 25 23 21 27 27 H 1.48500 * 109.47118 * 209.99862 * 25 23 21 28 28 H 1.48509 * 109.47282 * 329.99516 * 25 23 21 29 29 H 1.09000 * 109.46775 * 59.99240 * 1 2 3 30 30 H 1.08992 * 109.46935 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46708 * 300.00239 * 1 2 3 32 32 H 1.09003 * 109.46983 * 90.02789 * 9 8 6 33 33 H 1.09006 * 109.46551 * 210.02049 * 9 8 6 34 34 H 1.08990 * 109.47627 * 330.02486 * 9 8 6 35 35 H 1.08003 * 126.01644 * 179.97438 * 10 8 6 36 36 H 0.97000 * 120.00296 * 359.97438 * 12 11 5 37 37 H 1.00900 * 111.00286 * 300.00252 * 17 15 13 38 38 H 1.00906 * 110.99984 * 63.96325 * 17 15 13 39 39 H 1.08997 * 109.47415 * 304.99803 * 18 15 13 40 40 H 1.09004 * 109.47100 * 65.00265 * 18 15 13 41 41 H 1.08997 * 109.47054 * 300.00286 * 19 18 15 42 42 H 1.09004 * 109.46728 * 60.00299 * 19 18 15 43 43 H 1.08997 * 109.47415 * 300.00065 * 20 19 18 44 44 H 1.09004 * 109.47100 * 60.00527 * 20 19 18 45 45 H 0.97009 * 119.99187 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0418 1.2026 0.0000 4 8 1.3790 2.2234 0.0051 5 6 3.4554 1.2767 -0.0005 6 7 4.3323 0.2075 -0.0016 7 1 4.0814 -0.7296 -0.0018 8 6 5.6011 0.6862 -0.0024 9 6 6.8517 -0.1548 -0.0031 10 6 5.5657 2.0379 -0.0025 11 6 4.2187 2.4363 -0.0062 12 7 3.7399 3.7459 -0.0119 13 6 4.6047 4.7797 -0.0166 14 8 5.7994 4.5708 -0.0153 15 6 4.0871 6.1950 -0.0233 16 1 3.2231 6.2627 -0.6844 17 7 5.1414 7.0995 -0.5009 18 6 3.6765 6.5945 1.3954 19 6 3.0362 7.9839 1.3688 20 6 2.6261 8.3837 2.7875 21 6 1.9950 9.7520 2.7612 22 1 1.8966 10.2834 1.8262 23 6 1.5440 10.3258 3.9310 24 7 1.6643 9.6788 5.0697 25 14 0.7611 12.0214 3.8983 26 1 -0.7033 11.8866 3.6916 27 1 1.0176 12.7100 5.1887 28 1 1.3466 12.8157 2.7885 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 7.1528 -0.3571 -1.0310 33 1 7.6500 0.3810 0.5105 34 1 6.6569 -1.0961 0.5104 35 1 6.4223 2.6957 -0.0026 36 1 2.7843 3.9129 -0.0126 37 1 5.9539 7.0550 0.0957 38 1 5.3848 6.8972 -1.4591 39 1 2.9591 5.8713 1.7833 40 1 4.5574 6.6127 2.0371 41 1 3.7536 8.7071 0.9809 42 1 2.1553 7.9657 0.7270 43 1 1.9090 7.6606 3.1758 44 1 3.5073 8.4019 3.4289 45 1 1.3467 10.0824 5.8927 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594434821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:22 Heat of formation + Delta-G solvation = -123.652502 kcal Electronic energy + Delta-G solvation = -26960.497521 eV Core-core repulsion = 22976.907952 eV Total energy + Delta-G solvation = -3983.589568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.90630 -41.28286 -40.84036 -37.78295 -37.25440 -36.04147 -35.26375 -33.15366 -32.84416 -31.39532 -29.56425 -29.44992 -27.55440 -26.84455 -24.69883 -23.39230 -22.07367 -21.85903 -21.47005 -20.89277 -19.64402 -18.45017 -18.34284 -18.11732 -17.67295 -17.36942 -16.93172 -16.48075 -16.27389 -15.93746 -15.77124 -15.42235 -15.32123 -14.90933 -14.57553 -14.35370 -14.29356 -14.13735 -13.73698 -13.61390 -13.39391 -13.13411 -13.02914 -12.91795 -12.87504 -12.50967 -12.36725 -12.21198 -12.09489 -11.88706 -11.83130 -11.46852 -11.38850 -11.23338 -10.95800 -10.51971 -9.77723 -9.56017 -8.99699 -8.16855 -6.27457 -0.15261 1.20698 1.41161 1.43039 1.54397 1.58265 1.61734 1.84553 2.13344 2.23831 2.43754 3.16090 3.37991 3.59644 3.81928 3.90267 3.94715 4.09358 4.11222 4.28840 4.31052 4.40381 4.49404 4.58735 4.62924 4.68529 4.80395 4.82786 4.90261 5.03971 5.12854 5.17878 5.23242 5.25504 5.33939 5.59187 5.60519 5.79315 5.83667 5.93098 5.99733 6.26414 6.30289 6.44701 6.48243 6.62084 6.90186 6.90489 7.41472 8.95194 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.002604 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.068831 B =10748.225965 C =12081.447414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.538 3.462 4 O -0.543 6.543 5 C -0.119 4.119 6 N -0.510 5.510 7 H 0.441 0.559 8 C 0.121 3.879 9 C -0.092 4.092 10 C -0.250 4.250 11 C 0.167 3.833 12 N -0.638 5.638 13 C 0.487 3.513 14 O -0.540 6.540 15 C 0.092 3.908 16 H 0.121 0.879 17 N -0.811 5.811 18 C -0.096 4.096 19 C -0.083 4.083 20 C 0.021 3.979 21 C -0.539 4.539 22 H 0.061 0.939 23 C -0.004 4.004 24 N -0.936 5.936 25 Si 0.966 3.034 26 H -0.272 1.272 27 H -0.282 1.282 28 H -0.262 1.262 29 H 0.060 0.940 30 H 0.136 0.864 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.158 0.842 36 H 0.424 0.576 37 H 0.350 0.650 38 H 0.352 0.648 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.053 0.947 43 H -0.012 1.012 44 H -0.013 1.013 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.238 -27.163 -14.763 31.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.389 3.611 4 O -0.436 6.436 5 C -0.229 4.229 6 N -0.111 5.111 7 H 0.283 0.717 8 C -0.002 4.002 9 C -0.149 4.149 10 C -0.276 4.276 11 C 0.060 3.940 12 N -0.283 5.283 13 C 0.274 3.726 14 O -0.417 6.417 15 C -0.024 4.024 16 H 0.139 0.861 17 N -0.341 5.341 18 C -0.134 4.134 19 C -0.121 4.121 20 C -0.016 4.016 21 C -0.577 4.577 22 H 0.079 0.921 23 C -0.202 4.202 24 N -0.577 5.577 25 Si 0.790 3.210 26 H -0.197 1.197 27 H -0.208 1.208 28 H -0.187 1.187 29 H 0.079 0.921 30 H 0.154 0.846 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.176 0.824 36 H 0.263 0.737 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.006 0.994 44 H 0.005 0.995 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.144 -26.482 -14.464 30.794 hybrid contribution -0.876 -0.147 0.444 0.993 sum 5.268 -26.629 -14.021 30.552 Atomic orbital electron populations 1.23177 0.74995 1.05795 1.02399 1.86121 1.25104 1.31481 1.84608 1.18477 0.87146 0.82206 0.73318 1.90857 1.66314 1.36450 1.49977 1.17411 0.87131 0.87775 1.30598 1.41680 1.04253 1.08432 1.56730 0.71703 1.21194 0.86854 0.93537 0.98599 1.20688 0.90331 0.98846 1.05051 1.21100 0.95225 0.94735 1.16522 1.17840 0.93728 0.83295 0.99113 1.43348 1.12028 1.03063 1.69855 1.22790 0.86584 0.88979 0.74286 1.90575 1.16434 1.85844 1.48854 1.21592 0.97412 0.84080 0.99322 0.86093 1.59029 1.14511 1.52420 1.08121 1.21479 1.00300 0.98318 0.93347 1.21283 0.99200 0.94753 0.96838 1.19056 0.94309 0.94913 0.93306 1.21734 1.38836 1.03277 0.93849 0.92078 1.26020 0.96717 1.02248 0.95172 1.70119 1.48478 1.40050 0.99055 0.85439 0.78809 0.79064 0.77692 1.19725 1.20805 1.18654 0.92141 0.84552 0.92604 0.88234 0.88839 0.88565 0.82430 0.73660 0.83610 0.83406 0.91807 0.92765 0.91896 0.92800 0.99373 0.99484 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.45 113.37 1.18 1.59 16 2 O -0.36 -6.62 10.45 -58.91 -0.62 -7.23 16 3 C 0.54 13.12 7.72 68.64 0.53 13.65 16 4 O -0.54 -16.07 14.74 19.15 0.28 -15.79 16 5 C -0.12 -2.76 6.92 39.09 0.27 -2.49 16 6 N -0.51 -7.75 6.10 -175.17 -1.07 -8.82 16 7 H 0.44 3.68 8.96 -92.70 -0.83 2.85 16 8 C 0.12 1.89 7.11 41.28 0.29 2.18 16 9 C -0.09 -0.60 10.41 71.24 0.74 0.15 16 10 C -0.25 -6.00 9.50 22.12 0.21 -5.79 16 11 C 0.17 4.51 6.91 38.61 0.27 4.77 16 12 N -0.64 -17.91 5.39 -302.68 -1.63 -19.54 16 13 C 0.49 14.15 7.03 87.66 0.62 14.77 16 14 O -0.54 -17.25 13.43 -3.03 -0.04 -17.29 16 15 C 0.09 2.59 3.15 44.17 0.14 2.73 16 16 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 17 N -0.81 -21.62 8.44 -171.81 -1.45 -23.07 16 18 C -0.10 -3.38 4.84 30.59 0.15 -3.23 16 19 C -0.08 -3.52 5.04 30.59 0.15 -3.37 16 20 C 0.02 1.17 4.97 29.85 0.15 1.32 16 21 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 22 H 0.06 3.46 7.74 -2.91 -0.02 3.43 16 23 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 24 N -0.94 -59.01 13.29 21.45 0.28 -58.72 16 25 Si 0.97 45.69 29.54 68.60 2.03 47.71 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 27 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 28 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 29 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 30 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 32 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.16 4.24 5.97 -2.91 -0.02 4.22 16 36 H 0.42 11.77 6.80 -92.71 -0.63 11.14 16 37 H 0.35 9.62 8.58 -89.69 -0.77 8.85 16 38 H 0.35 7.86 9.06 -89.69 -0.81 7.05 16 39 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 2.68 7.75 -2.39 -0.02 2.66 16 42 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 43 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 44 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 45 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -77.77 382.15 1.20 -76.57 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -1.98 Total: 31.30 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 5.40 Total: -5.13 kcal Atomic # 7 Polarization: -106.28 SS G_CDS: -3.86 Total: -110.15 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -0.37 Total: -40.30 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -77.77 1.20 -76.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594434821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.082 kcal (2) G-P(sol) polarization free energy of solvation -77.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds