Wall clock time and date at job start Tue Mar 31 2020 14:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00419 * 2 1 4 4 C 1.52993 * 109.47241 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47265 * 55.00295 * 4 3 2 6 6 O 1.42907 * 109.47326 * 295.00175 * 4 3 2 7 7 C 1.42899 * 113.99555 * 149.99917 * 6 4 3 8 8 C 1.50703 * 109.47231 * 175.00523 * 4 3 2 9 9 O 1.21283 * 120.00571 * 115.00154 * 8 4 3 10 10 N 1.34780 * 119.99546 * 295.00157 * 8 4 3 11 11 C 1.39930 * 119.99602 * 174.72311 * 10 8 4 12 12 C 1.38927 * 120.04083 * 146.41047 * 11 10 8 13 13 C 1.38121 * 120.04110 * 179.69525 * 12 11 10 14 14 C 1.38211 * 120.12103 * 0.59548 * 13 12 11 15 15 C 1.38765 * 120.08695 * 359.68327 * 14 13 12 16 16 O 1.35901 * 120.02405 * 180.02562 * 15 14 13 17 17 C 1.42900 * 116.99652 * 0.02562 * 16 15 14 18 18 C 1.53002 * 109.46905 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.46982 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00195 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99823 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00025 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00102 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46762 * 59.99819 * 23 21 19 25 25 H 1.48501 * 109.47416 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47173 * 300.00157 * 23 21 19 27 27 C 1.38624 * 119.95651 * 0.02562 * 15 14 13 28 28 H 1.09000 * 109.47373 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46714 * 299.99657 * 1 2 3 30 30 H 1.09004 * 109.46960 * 59.99420 * 1 2 3 31 31 H 1.09008 * 109.46621 * 60.00322 * 3 2 1 32 32 H 1.08994 * 109.47288 * 300.00415 * 3 2 1 33 33 H 1.08993 * 109.47464 * 300.00061 * 7 6 4 34 34 H 1.09000 * 109.46727 * 180.02562 * 7 6 4 35 35 H 1.08995 * 109.47350 * 60.00781 * 7 6 4 36 36 H 0.96999 * 120.00262 * 354.71753 * 10 8 4 37 37 H 1.08007 * 119.98156 * 359.97438 * 12 11 10 38 38 H 1.08001 * 119.94252 * 180.29654 * 13 12 11 39 39 H 1.08004 * 119.95894 * 179.69593 * 14 13 12 40 40 H 1.08999 * 109.47658 * 300.00862 * 17 16 15 41 41 H 1.09002 * 109.47081 * 60.01023 * 17 16 15 42 42 H 1.09003 * 109.47260 * 300.00166 * 18 17 16 43 43 H 1.08993 * 109.46907 * 60.00442 * 18 17 16 44 44 H 0.97008 * 119.99629 * 180.02562 * 22 21 19 45 45 H 1.08008 * 120.06244 * 180.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8514 0.5681 -0.8409 6 8 3.9649 0.5794 1.2220 7 6 5.1682 -0.1819 1.1017 8 6 4.1481 2.5558 -0.1231 9 8 4.8064 3.0104 0.7885 10 7 3.9645 3.2769 -1.2468 11 6 4.4386 4.5915 -1.3197 12 6 4.9010 5.0980 -2.5278 13 6 5.3631 6.3976 -2.6012 14 6 5.3783 7.1932 -1.4711 15 6 4.9230 6.6906 -0.2604 16 8 4.9380 7.4742 0.8498 17 6 5.4353 8.8052 0.6977 18 6 5.3755 9.5289 2.0445 19 6 5.8993 10.9328 1.8839 20 1 6.2410 11.2746 0.9182 21 6 5.9432 11.7806 2.9703 22 7 5.5274 11.3643 4.1466 23 14 6.5918 13.5211 2.7713 24 1 5.7586 14.2495 1.7811 25 1 6.5338 14.2235 4.0784 26 1 7.9977 13.4740 2.2960 27 6 4.4529 5.3888 -0.1842 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8462 0.8901 32 1 1.6887 1.8463 -0.8899 33 1 5.0195 -0.9849 0.3799 34 1 5.4266 -0.6084 2.0709 35 1 5.9760 0.4665 0.7627 36 1 3.5038 2.8847 -2.0049 37 1 4.8949 4.4767 -3.4113 38 1 5.7177 6.7913 -3.5423 39 1 5.7447 8.2074 -1.5304 40 1 6.4677 8.7700 0.3501 41 1 4.8249 9.3402 -0.0299 42 1 4.3431 9.5642 2.3925 43 1 5.9860 8.9939 2.7718 44 1 5.5580 11.9610 4.9108 45 1 4.0977 4.9960 0.7572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596848720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:58 Heat of formation + Delta-G solvation = -136.271606 kcal Electronic energy + Delta-G solvation = -26580.873114 eV Core-core repulsion = 22564.443589 eV Total energy + Delta-G solvation = -4016.429525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.96286 -39.57665 -38.45172 -37.60744 -36.90064 -34.71351 -33.34256 -31.68491 -30.85606 -29.49001 -28.95321 -27.16935 -26.45922 -25.07610 -24.34200 -22.91503 -22.10506 -21.01354 -20.21120 -18.61239 -17.97200 -17.31311 -16.91756 -16.36131 -16.14416 -15.96600 -15.73600 -15.51474 -15.39440 -15.29769 -14.97295 -14.62842 -14.43688 -14.28229 -13.65164 -13.29454 -13.05040 -12.85761 -12.75547 -12.30520 -12.20987 -11.84233 -11.78131 -11.71471 -11.52891 -11.40211 -10.95070 -10.90775 -10.74201 -10.52545 -10.33777 -10.18462 -9.82455 -9.65488 -9.60180 -9.29069 -8.43523 -8.30112 -7.85168 -6.07889 -4.12829 1.26761 1.60534 2.22336 2.53331 3.27299 3.30000 3.33744 3.35092 3.36966 3.83335 3.94051 4.33779 4.37589 4.43867 4.50494 4.77343 4.92558 4.94738 4.96473 5.02641 5.14048 5.14927 5.19711 5.27369 5.28168 5.33761 5.41245 5.46316 5.63892 5.82393 6.02754 6.05351 6.20200 6.31331 6.49431 6.56952 6.58369 6.64367 6.73942 6.93939 7.11106 7.52881 7.67031 7.80762 7.82736 8.07908 8.25822 8.92569 9.51199 11.03622 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017241 B = 0.002212 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.636147 B =12654.146919 C =13264.756479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.069 3.931 4 C 0.080 3.920 5 H 0.098 0.902 6 O -0.347 6.347 7 C 0.029 3.971 8 C 0.487 3.513 9 O -0.484 6.484 10 N -0.670 5.670 11 C 0.175 3.825 12 C -0.195 4.195 13 C -0.061 4.061 14 C -0.224 4.224 15 C 0.165 3.835 16 O -0.312 6.312 17 C 0.065 3.935 18 C 0.025 3.975 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.889 5.889 23 Si 0.900 3.100 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.163 4.163 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.410 0.590 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.264 0.736 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.348 -24.118 -15.744 29.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.009 4.009 4 C 0.018 3.982 5 H 0.115 0.885 6 O -0.264 6.264 7 C -0.067 4.067 8 C 0.272 3.728 9 O -0.355 6.355 10 N -0.319 5.319 11 C 0.082 3.918 12 C -0.216 4.216 13 C -0.080 4.080 14 C -0.244 4.244 15 C 0.117 3.883 16 O -0.224 6.224 17 C -0.009 4.009 18 C -0.012 4.012 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.184 4.184 28 H 0.107 0.893 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.246 0.754 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.150 0.850 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.074 0.926 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.959 -23.983 -14.418 28.836 hybrid contribution 0.241 1.124 -0.853 1.432 sum -6.718 -22.859 -15.272 28.300 Atomic orbital electron populations 1.22801 0.80273 1.03118 1.00388 1.87888 1.20196 1.26531 1.95504 1.22475 0.90097 0.86088 1.02211 1.21933 0.94145 0.91331 0.90812 0.88462 1.88060 1.42288 1.66868 1.29161 1.22906 0.86352 0.94298 1.03188 1.21353 0.81426 0.87542 0.82471 1.90830 1.36557 1.70064 1.38033 1.43546 1.58369 1.12343 1.17608 1.17270 0.97289 0.83077 0.94185 1.20614 1.06989 0.97340 0.96611 1.20669 0.96688 0.92821 0.97793 1.21404 1.08130 1.02062 0.92773 1.18950 0.92379 0.90432 0.86522 1.86201 1.78878 1.26445 1.30918 1.23362 0.96916 0.77545 1.03097 1.19128 0.98803 0.93874 0.89427 1.20925 1.43415 0.96577 0.95595 0.92403 1.24997 0.95243 0.98870 0.95114 1.69973 1.46366 1.36381 0.99979 0.86540 0.79470 0.83946 0.77362 1.20108 1.21124 1.20095 1.20263 1.07051 0.91614 0.99493 0.89266 0.93591 0.93837 0.91195 0.91191 0.93671 0.88890 0.93570 0.75438 0.86050 0.85628 0.84971 0.93024 0.93018 0.95380 0.95328 0.92641 0.84296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.31 10.67 -40.08 -0.43 -3.73 16 3 C 0.07 0.55 5.57 37.15 0.21 0.76 16 4 C 0.08 0.74 2.80 -27.89 -0.08 0.66 16 5 H 0.10 0.63 7.79 -51.93 -0.40 0.22 16 6 O -0.35 -4.11 9.85 -59.70 -0.59 -4.70 16 7 C 0.03 0.26 10.81 101.05 1.09 1.35 16 8 C 0.49 5.79 6.87 -10.98 -0.08 5.71 16 9 O -0.48 -8.20 14.19 -14.30 -0.20 -8.41 16 10 N -0.67 -6.55 5.22 -9.88 -0.05 -6.61 16 11 C 0.18 2.31 6.28 -83.72 -0.53 1.79 16 12 C -0.20 -2.23 9.96 -39.37 -0.39 -2.62 16 13 C -0.06 -0.76 10.03 -39.63 -0.40 -1.16 16 14 C -0.22 -3.51 9.04 -39.40 -0.36 -3.87 16 15 C 0.17 3.04 6.68 -39.24 -0.26 2.78 16 16 O -0.31 -6.79 10.13 -19.43 -0.20 -6.99 16 17 C 0.06 1.43 4.68 37.16 0.17 1.60 16 18 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 19 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 20 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 23 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 C -0.16 -2.78 8.59 -39.25 -0.34 -3.12 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.07 0.37 7.94 -51.93 -0.41 -0.04 16 33 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.41 2.24 8.71 -40.82 -0.36 1.88 16 37 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.13 2.01 6.29 -52.48 -0.33 1.68 16 40 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 41 H 0.05 1.06 7.66 -51.93 -0.40 0.67 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 45 H 0.14 2.59 6.41 -52.48 -0.34 2.26 16 LS Contribution 384.29 15.07 5.79 5.79 Total: -1.00 -35.69 384.29 -7.18 -42.87 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.82 Total: -0.68 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -0.40 Total: -7.88 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.68 Total: -32.75 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -1.42 Total: -23.83 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.69 -7.18 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596848720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.400 kcal (2) G-P(sol) polarization free energy of solvation -35.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds