Wall clock time and date at job start Tue Mar 31 2020 14:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00419 * 2 1 4 4 C 1.52993 * 109.47241 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47265 * 55.00295 * 4 3 2 6 6 O 1.42907 * 109.47326 * 295.00175 * 4 3 2 7 7 C 1.42899 * 113.99555 * 149.99917 * 6 4 3 8 8 C 1.50703 * 109.47231 * 175.00523 * 4 3 2 9 9 O 1.21283 * 120.00571 * 115.00154 * 8 4 3 10 10 N 1.34780 * 119.99546 * 295.00157 * 8 4 3 11 11 C 1.39930 * 119.99602 * 174.72311 * 10 8 4 12 12 C 1.38927 * 120.04083 * 146.41047 * 11 10 8 13 13 C 1.38121 * 120.04110 * 179.69525 * 12 11 10 14 14 C 1.38211 * 120.12103 * 0.59548 * 13 12 11 15 15 C 1.38765 * 120.08695 * 359.68327 * 14 13 12 16 16 O 1.35901 * 120.02405 * 180.02562 * 15 14 13 17 17 C 1.42900 * 116.99652 * 0.02562 * 16 15 14 18 18 C 1.53002 * 109.46905 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.46982 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00195 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99823 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00025 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00102 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46762 * 59.99819 * 23 21 19 25 25 H 1.48501 * 109.47416 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47173 * 300.00157 * 23 21 19 27 27 C 1.38624 * 119.95651 * 0.02562 * 15 14 13 28 28 H 1.09000 * 109.47373 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46714 * 299.99657 * 1 2 3 30 30 H 1.09004 * 109.46960 * 59.99420 * 1 2 3 31 31 H 1.09008 * 109.46621 * 60.00322 * 3 2 1 32 32 H 1.08994 * 109.47288 * 300.00415 * 3 2 1 33 33 H 1.08993 * 109.47464 * 300.00061 * 7 6 4 34 34 H 1.09000 * 109.46727 * 180.02562 * 7 6 4 35 35 H 1.08995 * 109.47350 * 60.00781 * 7 6 4 36 36 H 0.96999 * 120.00262 * 354.71753 * 10 8 4 37 37 H 1.08007 * 119.98156 * 359.97438 * 12 11 10 38 38 H 1.08001 * 119.94252 * 180.29654 * 13 12 11 39 39 H 1.08004 * 119.95894 * 179.69593 * 14 13 12 40 40 H 1.08999 * 109.47658 * 300.00862 * 17 16 15 41 41 H 1.09002 * 109.47081 * 60.01023 * 17 16 15 42 42 H 1.09003 * 109.47260 * 300.00166 * 18 17 16 43 43 H 1.08993 * 109.46907 * 60.00442 * 18 17 16 44 44 H 0.97008 * 119.99629 * 180.02562 * 22 21 19 45 45 H 1.08008 * 120.06244 * 180.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8514 0.5681 -0.8409 6 8 3.9649 0.5794 1.2220 7 6 5.1682 -0.1819 1.1017 8 6 4.1481 2.5558 -0.1231 9 8 4.8064 3.0104 0.7885 10 7 3.9645 3.2769 -1.2468 11 6 4.4386 4.5915 -1.3197 12 6 4.9010 5.0980 -2.5278 13 6 5.3631 6.3976 -2.6012 14 6 5.3783 7.1932 -1.4711 15 6 4.9230 6.6906 -0.2604 16 8 4.9380 7.4742 0.8498 17 6 5.4353 8.8052 0.6977 18 6 5.3755 9.5289 2.0445 19 6 5.8993 10.9328 1.8839 20 1 6.2410 11.2746 0.9182 21 6 5.9432 11.7806 2.9703 22 7 5.5274 11.3643 4.1466 23 14 6.5918 13.5211 2.7713 24 1 5.7586 14.2495 1.7811 25 1 6.5338 14.2235 4.0784 26 1 7.9977 13.4740 2.2960 27 6 4.4529 5.3888 -0.1842 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8462 0.8901 32 1 1.6887 1.8463 -0.8899 33 1 5.0195 -0.9849 0.3799 34 1 5.4266 -0.6084 2.0709 35 1 5.9760 0.4665 0.7627 36 1 3.5038 2.8847 -2.0049 37 1 4.8949 4.4767 -3.4113 38 1 5.7177 6.7913 -3.5423 39 1 5.7447 8.2074 -1.5304 40 1 6.4677 8.7700 0.3501 41 1 4.8249 9.3402 -0.0299 42 1 4.3431 9.5642 2.3925 43 1 5.9860 8.9939 2.7718 44 1 5.5580 11.9610 4.9108 45 1 4.0977 4.9960 0.7572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596848720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:57 Heat of formation + Delta-G solvation = -161.814093 kcal Electronic energy + Delta-G solvation = -26581.980719 eV Core-core repulsion = 22564.443589 eV Total energy + Delta-G solvation = -4017.537130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.95677 -40.80717 -39.33415 -38.50948 -37.93029 -35.85103 -35.39520 -32.62979 -32.45561 -30.91550 -30.04752 -27.73362 -27.20972 -26.95304 -25.19500 -24.02122 -23.59285 -22.40000 -21.38318 -19.81976 -18.90484 -18.47807 -18.02193 -17.69512 -17.02700 -16.99374 -16.86917 -16.77248 -16.70705 -16.34622 -16.26813 -15.88245 -15.50690 -15.08495 -14.59214 -14.48337 -14.35739 -14.29918 -14.14479 -13.40607 -13.38022 -13.25488 -12.78998 -12.74090 -12.65523 -12.61021 -12.38773 -12.29392 -12.10546 -11.82595 -11.70659 -11.58328 -11.43064 -11.26279 -10.74443 -10.63237 -10.52624 -9.46988 -9.05249 -8.27578 -6.42297 0.16183 0.46407 1.29134 1.39857 1.44771 1.52723 1.67277 2.25628 2.48067 2.60918 2.73427 2.82658 3.06451 3.58757 3.74085 3.86488 3.89377 4.14407 4.18311 4.23204 4.24285 4.24803 4.32682 4.41883 4.48691 4.49785 4.55252 4.55566 4.59606 4.67226 4.72935 4.79863 4.89494 5.21031 5.24126 5.29598 5.38668 5.42970 5.49711 5.66255 5.84178 5.90446 6.04881 6.07657 6.30411 6.53909 6.72510 6.96336 7.28017 8.85659 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017241 B = 0.002212 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.636147 B =12654.146919 C =13264.756479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.070 3.930 4 C 0.084 3.916 5 H 0.135 0.865 6 O -0.380 6.380 7 C 0.025 3.975 8 C 0.488 3.512 9 O -0.543 6.543 10 N -0.649 5.649 11 C 0.177 3.823 12 C -0.170 4.170 13 C -0.052 4.052 14 C -0.233 4.233 15 C 0.123 3.877 16 O -0.347 6.347 17 C 0.085 3.915 18 C 0.027 3.973 19 C -0.546 4.546 20 H 0.074 0.926 21 C -0.002 4.002 22 N -0.933 5.933 23 Si 0.980 3.020 24 H -0.261 1.261 25 H -0.283 1.283 26 H -0.263 1.263 27 C -0.187 4.187 28 H 0.102 0.898 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.035 0.965 36 H 0.435 0.565 37 H 0.173 0.827 38 H 0.168 0.832 39 H 0.133 0.867 40 H 0.061 0.939 41 H 0.066 0.934 42 H -0.004 1.004 43 H -0.007 1.007 44 H 0.267 0.733 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.250 -24.765 -20.246 32.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.319 6.319 3 C -0.007 4.007 4 C 0.022 3.978 5 H 0.152 0.848 6 O -0.297 6.297 7 C -0.071 4.071 8 C 0.275 3.725 9 O -0.419 6.419 10 N -0.299 5.299 11 C 0.083 3.917 12 C -0.190 4.190 13 C -0.070 4.070 14 C -0.252 4.252 15 C 0.077 3.923 16 O -0.262 6.262 17 C 0.011 3.989 18 C -0.011 4.011 19 C -0.583 4.583 20 H 0.093 0.907 21 C -0.200 4.200 22 N -0.573 5.573 23 Si 0.803 3.197 24 H -0.185 1.185 25 H -0.209 1.209 26 H -0.187 1.187 27 C -0.208 4.208 28 H 0.120 0.880 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.053 0.947 36 H 0.276 0.724 37 H 0.190 0.810 38 H 0.185 0.815 39 H 0.151 0.849 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.015 0.985 43 H 0.011 0.989 44 H 0.076 0.924 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.896 -24.678 -18.990 31.893 hybrid contribution 0.145 1.136 0.483 1.243 sum -6.750 -23.542 -18.507 30.697 Atomic orbital electron populations 1.22992 0.78867 1.04247 1.01084 1.87848 1.21745 1.26624 1.95642 1.22501 0.89232 0.86212 1.02777 1.22098 0.94721 0.89757 0.91246 0.84791 1.88024 1.43214 1.67346 1.31104 1.23036 0.85221 0.94519 1.04292 1.21965 0.80308 0.88368 0.81854 1.90820 1.39355 1.71530 1.40147 1.43396 1.57631 1.10853 1.18053 1.17402 0.96793 0.83875 0.93664 1.21154 1.03524 0.97280 0.97030 1.21171 0.95108 0.92707 0.98023 1.21550 1.08203 1.02719 0.92734 1.19262 0.95526 0.90803 0.86715 1.86101 1.80095 1.26399 1.33555 1.22900 0.97851 0.78125 1.00041 1.18981 0.96022 0.94556 0.91494 1.21363 1.43415 0.97048 0.96504 0.90743 1.26124 0.95226 1.04135 0.94530 1.70140 1.47652 1.38376 1.01083 0.85277 0.79301 0.77474 0.77641 1.18548 1.20860 1.18731 1.20228 1.08657 0.91983 0.99972 0.88005 0.94075 0.91968 0.93370 0.87927 0.90948 0.88556 0.94666 0.72407 0.80992 0.81472 0.84921 0.92043 0.91543 0.98518 0.98861 0.92440 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 11.01 113.37 1.25 1.48 16 2 O -0.40 -6.22 10.67 -144.34 -1.54 -7.76 16 3 C 0.07 1.02 5.57 71.98 0.40 1.43 16 4 C 0.08 1.44 2.80 29.85 0.08 1.52 16 5 H 0.13 1.29 7.79 -2.39 -0.02 1.27 16 6 O -0.38 -9.03 9.85 -125.59 -1.24 -10.27 16 7 C 0.03 0.44 10.81 113.37 1.23 1.66 16 8 C 0.49 11.41 6.87 87.66 0.60 12.02 16 9 O -0.54 -19.50 14.19 15.95 0.23 -19.27 16 10 N -0.65 -11.19 5.22 -303.55 -1.59 -12.77 16 11 C 0.18 4.37 6.28 38.14 0.24 4.61 16 12 C -0.17 -3.10 9.96 22.41 0.22 -2.88 16 13 C -0.05 -1.08 10.03 22.24 0.22 -0.86 16 14 C -0.23 -7.05 9.04 22.39 0.20 -6.85 16 15 C 0.12 4.73 6.68 22.49 0.15 4.88 16 16 O -0.35 -16.30 10.13 -92.43 -0.94 -17.24 16 17 C 0.08 3.93 4.68 71.98 0.34 4.26 16 18 C 0.03 1.53 5.34 29.85 0.16 1.69 16 19 C -0.55 -31.61 9.11 25.60 0.23 -31.38 16 20 H 0.07 3.96 7.74 -2.91 -0.02 3.94 16 21 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 22 N -0.93 -58.58 13.29 21.45 0.28 -58.30 16 23 Si 0.98 44.25 29.54 68.60 2.03 46.27 16 24 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 27 C -0.19 -6.67 8.59 22.48 0.19 -6.47 16 28 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.10 0.78 7.94 -2.39 -0.02 0.76 16 33 H 0.07 0.83 8.08 -2.39 -0.02 0.81 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.43 2.87 8.71 -92.71 -0.81 2.06 16 37 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 38 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 39 H 0.13 3.91 6.29 -2.91 -0.02 3.90 16 40 H 0.06 2.66 7.66 -2.39 -0.02 2.64 16 41 H 0.07 2.81 7.66 -2.39 -0.02 2.79 16 42 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 43 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 44 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 45 H 0.11 4.43 6.41 -2.91 -0.02 4.41 16 Total: -1.00 -85.24 384.29 3.41 -81.83 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.19 Total: 12.04 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 5.98 Total: -14.53 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: -1.30 Total: -71.07 kcal Atomic # 8 Polarization: -51.05 SS G_CDS: -3.49 Total: -54.54 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -85.24 3.41 -81.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596848720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.987 kcal (2) G-P(sol) polarization free energy of solvation -85.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds