Wall clock time and date at job start Tue Mar 31 2020 14:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00288 * 2 1 4 4 C 1.52999 * 109.47025 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47345 * 304.99502 * 4 3 2 6 6 O 1.42901 * 109.47126 * 64.99731 * 4 3 2 7 7 C 1.42895 * 114.00056 * 269.99988 * 6 4 3 8 8 C 1.50706 * 109.46881 * 184.99604 * 4 3 2 9 9 O 1.21286 * 120.00189 * 244.99851 * 8 4 3 10 10 N 1.34773 * 119.99707 * 65.00113 * 8 4 3 11 11 C 1.39920 * 120.00098 * 185.27535 * 10 8 4 12 12 C 1.38933 * 120.04634 * 213.33551 * 11 10 8 13 13 C 1.38119 * 120.03853 * 179.97438 * 12 11 10 14 14 C 1.38214 * 120.13044 * 359.76345 * 13 12 11 15 15 C 1.38770 * 120.07940 * 0.51236 * 14 13 12 16 16 O 1.35900 * 120.01912 * 179.73983 * 15 14 13 17 17 C 1.42903 * 116.99773 * 359.72708 * 16 15 14 18 18 C 1.53005 * 109.46696 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.46771 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00211 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99655 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00118 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99963 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47163 * 90.00009 * 23 21 19 25 25 H 1.48503 * 109.47380 * 210.00211 * 23 21 19 26 26 H 1.48508 * 109.47062 * 330.00268 * 23 21 19 27 27 C 1.38624 * 119.96071 * 359.47320 * 15 14 13 28 28 H 1.08998 * 109.46834 * 60.00240 * 1 2 3 29 29 H 1.09003 * 109.47511 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47132 * 300.00371 * 1 2 3 31 31 H 1.08993 * 109.47020 * 59.99486 * 3 2 1 32 32 H 1.09003 * 109.46537 * 299.99890 * 3 2 1 33 33 H 1.09004 * 109.47274 * 59.99908 * 7 6 4 34 34 H 1.09001 * 109.47307 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.46790 * 299.99949 * 7 6 4 36 36 H 0.97002 * 120.00239 * 5.27584 * 10 8 4 37 37 H 1.07993 * 119.97716 * 359.97438 * 12 11 10 38 38 H 1.08002 * 119.93388 * 180.02562 * 13 12 11 39 39 H 1.07997 * 119.96478 * 180.27540 * 14 13 12 40 40 H 1.08997 * 109.47097 * 299.99831 * 17 16 15 41 41 H 1.08994 * 109.46891 * 60.00377 * 17 16 15 42 42 H 1.09007 * 109.46545 * 299.99923 * 18 17 16 43 43 H 1.08990 * 109.47028 * 59.99735 * 18 17 16 44 44 H 0.96996 * 119.99893 * 180.02562 * 22 21 19 45 45 H 1.07997 * 120.06421 * 180.25795 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8508 0.5685 0.8427 6 8 3.9658 0.5790 -1.2201 7 6 4.0471 -0.8466 -1.1647 8 6 4.1480 2.5559 0.1244 9 8 4.8070 3.0102 -0.7868 10 7 3.9635 3.2774 1.2477 11 6 4.4374 4.5919 1.3206 12 6 4.8940 5.1007 2.5301 13 6 5.3622 6.3980 2.6018 14 6 5.3827 7.1918 1.4705 15 6 4.9226 6.6908 0.2610 16 8 4.9383 7.4741 -0.8495 17 6 5.4363 8.8049 -0.6976 18 6 5.3760 9.5287 -2.0443 19 6 5.9017 10.9319 -1.8843 20 1 6.2441 11.2735 -0.9187 21 6 5.9455 11.7796 -2.9708 22 7 5.5280 11.3639 -4.1466 23 14 6.5964 13.5193 -2.7724 24 1 8.0609 13.5309 -3.0184 25 1 5.9235 14.4140 -3.7481 26 1 6.3225 13.9960 -1.3929 27 6 4.4521 5.3890 0.1849 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8463 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.0652 -1.2577 -0.9304 34 1 4.3810 -1.2293 -2.1292 35 1 4.7577 -1.1401 -0.3920 36 1 3.5021 2.8855 2.0056 37 1 4.8826 4.4813 3.4147 38 1 5.7171 6.7917 3.5429 39 1 5.7535 8.2044 1.5287 40 1 4.8262 9.3403 0.0298 41 1 6.4686 8.7690 -0.3499 42 1 5.9858 8.9933 -2.7721 43 1 4.3435 9.5644 -2.3916 44 1 5.5592 11.9601 -4.9110 45 1 4.0976 4.9961 -0.7565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596848721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:01 Heat of formation + Delta-G solvation = -135.441002 kcal Electronic energy + Delta-G solvation = -26547.245880 eV Core-core repulsion = 22530.852373 eV Total energy + Delta-G solvation = -4016.393507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.92235 -39.57351 -38.60377 -37.49366 -36.93751 -34.70305 -33.33413 -31.63102 -30.84015 -29.45492 -28.92107 -27.44874 -26.33008 -25.07398 -24.31548 -22.89935 -22.09877 -21.01297 -20.19673 -18.59551 -17.92432 -17.32026 -16.97306 -16.37972 -16.21720 -15.96976 -15.77192 -15.46704 -15.39590 -15.26684 -14.86378 -14.63924 -14.42110 -14.28376 -13.59774 -13.27050 -13.09051 -12.95162 -12.74980 -12.31520 -12.29436 -11.97070 -11.78959 -11.69522 -11.59119 -11.40609 -10.91782 -10.82364 -10.55274 -10.40075 -10.29416 -10.15425 -9.81630 -9.77726 -9.62615 -9.27079 -8.43043 -8.28997 -7.83937 -6.07330 -4.12102 1.28213 1.61810 2.24580 2.39250 3.20754 3.29380 3.34998 3.37756 3.54520 3.88116 3.95441 4.27695 4.38772 4.45034 4.49975 4.73082 4.88098 4.91449 4.97663 5.03188 5.15808 5.17531 5.21349 5.26890 5.28860 5.34988 5.42160 5.51808 5.64947 5.82922 6.03884 6.06631 6.20975 6.32352 6.50638 6.51938 6.59396 6.65912 6.75044 6.94989 7.12131 7.54057 7.68037 7.82719 7.83713 8.09001 8.26667 8.93555 9.51950 11.04263 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017942 B = 0.002181 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.216192 B =12837.517722 C =13574.319253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.387 6.387 3 C 0.043 3.957 4 C 0.080 3.920 5 H 0.097 0.903 6 O -0.353 6.353 7 C 0.028 3.972 8 C 0.512 3.488 9 O -0.477 6.477 10 N -0.670 5.670 11 C 0.177 3.823 12 C -0.195 4.195 13 C -0.061 4.061 14 C -0.224 4.224 15 C 0.166 3.834 16 O -0.312 6.312 17 C 0.065 3.935 18 C 0.024 3.976 19 C -0.526 4.526 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.164 4.164 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.040 0.960 36 H 0.410 0.590 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.263 0.737 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.599 -24.809 15.691 30.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C -0.034 4.034 4 C 0.018 3.982 5 H 0.115 0.885 6 O -0.270 6.270 7 C -0.068 4.068 8 C 0.296 3.704 9 O -0.347 6.347 10 N -0.318 5.318 11 C 0.084 3.916 12 C -0.215 4.215 13 C -0.079 4.079 14 C -0.244 4.244 15 C 0.117 3.883 16 O -0.224 6.224 17 C -0.009 4.009 18 C -0.013 4.013 19 C -0.564 4.564 20 H 0.077 0.923 21 C -0.143 4.143 22 N -0.527 5.527 23 Si 0.727 3.273 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.184 4.184 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.059 0.941 36 H 0.246 0.754 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.150 0.850 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.066 -24.576 14.384 29.596 hybrid contribution -0.065 0.910 0.836 1.238 sum -8.131 -23.666 15.221 29.289 Atomic orbital electron populations 1.22800 0.80266 1.03050 1.00467 1.87830 1.20387 1.26877 1.95537 1.23038 0.92208 0.85964 1.02230 1.21824 0.92562 0.92968 0.90824 0.88545 1.88052 1.87681 1.20435 1.30835 1.22978 1.01197 0.79986 1.02618 1.20267 0.81225 0.86287 0.82583 1.90843 1.36039 1.69805 1.38030 1.43379 1.58600 1.12362 1.17439 1.17234 0.97348 0.82840 0.94212 1.20602 1.06995 0.97371 0.96537 1.20666 0.96648 0.92838 0.97793 1.21406 1.08055 1.02108 0.92784 1.18946 0.92359 0.90423 0.86525 1.86202 1.78863 1.26468 1.30899 1.23362 0.96921 0.77550 1.03088 1.19135 0.98803 0.93893 0.89446 1.20964 1.43215 0.96605 0.95632 0.92349 1.24999 0.95251 0.98873 0.95132 1.69980 1.46377 1.36356 0.99988 0.86484 0.79009 0.83864 0.77989 1.20499 1.21069 1.19778 1.20267 1.07076 0.91602 0.99499 0.93605 0.89311 0.93782 0.91701 0.91194 0.92139 0.89287 0.94101 0.75413 0.86020 0.85611 0.84960 0.93025 0.93004 0.95314 0.95372 0.92705 0.84263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.97 8.83 -40.09 -0.35 -3.32 16 3 C 0.04 0.33 5.57 37.16 0.21 0.54 16 4 C 0.08 0.75 2.91 -27.88 -0.08 0.67 16 5 H 0.10 0.63 7.79 -51.93 -0.40 0.22 16 6 O -0.35 -4.20 9.88 -59.70 -0.59 -4.79 16 7 C 0.03 0.23 10.71 101.05 1.08 1.31 16 8 C 0.51 6.26 6.92 -10.98 -0.08 6.18 16 9 O -0.48 -8.39 14.19 -14.31 -0.20 -8.59 16 10 N -0.67 -6.63 5.22 -9.87 -0.05 -6.68 16 11 C 0.18 2.35 6.28 -83.71 -0.53 1.83 16 12 C -0.19 -2.23 9.96 -39.37 -0.39 -2.62 16 13 C -0.06 -0.76 10.03 -39.63 -0.40 -1.16 16 14 C -0.22 -3.52 9.04 -39.39 -0.36 -3.87 16 15 C 0.17 3.06 6.68 -39.24 -0.26 2.80 16 16 O -0.31 -6.80 10.13 -19.43 -0.20 -7.00 16 17 C 0.06 1.43 4.68 37.16 0.17 1.60 16 18 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 19 C -0.53 -14.88 9.11 -34.44 -0.31 -15.20 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 23 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 C -0.16 -2.80 8.59 -39.24 -0.34 -3.13 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.35 7.93 -51.93 -0.41 -0.07 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.46 6.40 -51.93 -0.33 0.12 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 36 H 0.41 2.26 8.70 -40.82 -0.36 1.91 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.13 2.02 6.29 -52.49 -0.33 1.69 16 40 H 0.05 1.06 7.67 -51.93 -0.40 0.67 16 41 H 0.05 1.09 7.65 -51.93 -0.40 0.69 16 42 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.14 2.61 6.42 -52.49 -0.34 2.27 16 LS Contribution 380.78 15.07 5.74 5.74 Total: -1.00 -35.69 380.78 -7.09 -42.78 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.73 Total: -0.80 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -0.41 Total: -7.66 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.68 Total: -32.86 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -1.34 Total: -23.70 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.69 -7.09 -42.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596848721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.662 kcal (2) G-P(sol) polarization free energy of solvation -35.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds