Wall clock time and date at job start Tue Mar 31 2020 14:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00288 * 2 1 4 4 C 1.52999 * 109.47025 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47345 * 304.99502 * 4 3 2 6 6 O 1.42901 * 109.47126 * 64.99731 * 4 3 2 7 7 C 1.42895 * 114.00056 * 269.99988 * 6 4 3 8 8 C 1.50706 * 109.46881 * 184.99604 * 4 3 2 9 9 O 1.21286 * 120.00189 * 244.99851 * 8 4 3 10 10 N 1.34773 * 119.99707 * 65.00113 * 8 4 3 11 11 C 1.39920 * 120.00098 * 185.27535 * 10 8 4 12 12 C 1.38933 * 120.04634 * 213.33551 * 11 10 8 13 13 C 1.38119 * 120.03853 * 179.97438 * 12 11 10 14 14 C 1.38214 * 120.13044 * 359.76345 * 13 12 11 15 15 C 1.38770 * 120.07940 * 0.51236 * 14 13 12 16 16 O 1.35900 * 120.01912 * 179.73983 * 15 14 13 17 17 C 1.42903 * 116.99773 * 359.72708 * 16 15 14 18 18 C 1.53005 * 109.46696 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.46771 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00211 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99655 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00118 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99963 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47163 * 90.00009 * 23 21 19 25 25 H 1.48503 * 109.47380 * 210.00211 * 23 21 19 26 26 H 1.48508 * 109.47062 * 330.00268 * 23 21 19 27 27 C 1.38624 * 119.96071 * 359.47320 * 15 14 13 28 28 H 1.08998 * 109.46834 * 60.00240 * 1 2 3 29 29 H 1.09003 * 109.47511 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47132 * 300.00371 * 1 2 3 31 31 H 1.08993 * 109.47020 * 59.99486 * 3 2 1 32 32 H 1.09003 * 109.46537 * 299.99890 * 3 2 1 33 33 H 1.09004 * 109.47274 * 59.99908 * 7 6 4 34 34 H 1.09001 * 109.47307 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.46790 * 299.99949 * 7 6 4 36 36 H 0.97002 * 120.00239 * 5.27584 * 10 8 4 37 37 H 1.07993 * 119.97716 * 359.97438 * 12 11 10 38 38 H 1.08002 * 119.93388 * 180.02562 * 13 12 11 39 39 H 1.07997 * 119.96478 * 180.27540 * 14 13 12 40 40 H 1.08997 * 109.47097 * 299.99831 * 17 16 15 41 41 H 1.08994 * 109.46891 * 60.00377 * 17 16 15 42 42 H 1.09007 * 109.46545 * 299.99923 * 18 17 16 43 43 H 1.08990 * 109.47028 * 59.99735 * 18 17 16 44 44 H 0.96996 * 119.99893 * 180.02562 * 22 21 19 45 45 H 1.07997 * 120.06421 * 180.25795 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8508 0.5685 0.8427 6 8 3.9658 0.5790 -1.2201 7 6 4.0471 -0.8466 -1.1647 8 6 4.1480 2.5559 0.1244 9 8 4.8070 3.0102 -0.7868 10 7 3.9635 3.2774 1.2477 11 6 4.4374 4.5919 1.3206 12 6 4.8940 5.1007 2.5301 13 6 5.3622 6.3980 2.6018 14 6 5.3827 7.1918 1.4705 15 6 4.9226 6.6908 0.2610 16 8 4.9383 7.4741 -0.8495 17 6 5.4363 8.8049 -0.6976 18 6 5.3760 9.5287 -2.0443 19 6 5.9017 10.9319 -1.8843 20 1 6.2441 11.2735 -0.9187 21 6 5.9455 11.7796 -2.9708 22 7 5.5280 11.3639 -4.1466 23 14 6.5964 13.5193 -2.7724 24 1 8.0609 13.5309 -3.0184 25 1 5.9235 14.4140 -3.7481 26 1 6.3225 13.9960 -1.3929 27 6 4.4521 5.3890 0.1849 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8463 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.0652 -1.2577 -0.9304 34 1 4.3810 -1.2293 -2.1292 35 1 4.7577 -1.1401 -0.3920 36 1 3.5021 2.8855 2.0056 37 1 4.8826 4.4813 3.4147 38 1 5.7171 6.7917 3.5429 39 1 5.7535 8.2044 1.5287 40 1 4.8262 9.3403 0.0298 41 1 6.4686 8.7690 -0.3499 42 1 5.9858 8.9933 -2.7721 43 1 4.3435 9.5644 -2.3916 44 1 5.5592 11.9601 -4.9110 45 1 4.0976 4.9961 -0.7565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596848721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:00 Heat of formation + Delta-G solvation = -160.873335 kcal Electronic energy + Delta-G solvation = -26548.348709 eV Core-core repulsion = 22530.852373 eV Total energy + Delta-G solvation = -4017.496336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.93144 -40.78572 -39.46871 -38.46342 -37.89096 -35.85655 -35.39243 -32.62370 -32.40938 -30.89099 -30.00003 -27.99766 -27.07713 -26.86889 -25.18611 -23.99594 -23.58961 -22.40250 -21.38398 -19.81733 -18.83991 -18.47560 -18.00554 -17.73052 -17.02997 -16.98459 -16.95284 -16.77870 -16.70610 -16.34960 -16.23488 -15.79370 -15.51554 -14.97405 -14.57815 -14.48181 -14.34906 -14.29929 -14.11210 -13.53964 -13.37342 -13.25840 -12.88540 -12.75837 -12.65354 -12.59009 -12.47579 -12.23655 -12.16745 -11.81690 -11.60323 -11.43392 -11.31259 -11.09339 -10.84538 -10.63675 -10.56543 -9.46637 -9.04722 -8.27390 -6.41928 0.16657 0.47175 1.29907 1.40132 1.43324 1.53446 1.54743 2.25390 2.48143 2.61396 2.80249 2.94570 3.06767 3.56401 3.71133 3.86897 3.90102 4.15114 4.18863 4.21416 4.24705 4.25709 4.38704 4.42713 4.50238 4.54289 4.55638 4.59187 4.67090 4.67921 4.73386 4.86282 4.93961 5.21411 5.24228 5.30132 5.39403 5.43620 5.50407 5.66835 5.86735 5.95450 6.02829 6.05419 6.31210 6.54698 6.73145 6.96257 7.28380 8.86120 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017942 B = 0.002181 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.216192 B =12837.517722 C =13574.319253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.398 6.398 3 C 0.047 3.953 4 C 0.085 3.915 5 H 0.133 0.867 6 O -0.393 6.393 7 C 0.026 3.974 8 C 0.511 3.489 9 O -0.541 6.541 10 N -0.648 5.648 11 C 0.178 3.822 12 C -0.169 4.169 13 C -0.051 4.051 14 C -0.232 4.232 15 C 0.123 3.877 16 O -0.347 6.347 17 C 0.085 3.915 18 C 0.026 3.974 19 C -0.544 4.544 20 H 0.075 0.925 21 C -0.002 4.002 22 N -0.934 5.934 23 Si 0.980 3.020 24 H -0.270 1.270 25 H -0.281 1.281 26 H -0.256 1.256 27 C -0.188 4.188 28 H 0.039 0.961 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.436 0.564 37 H 0.173 0.827 38 H 0.168 0.832 39 H 0.133 0.867 40 H 0.067 0.933 41 H 0.062 0.938 42 H -0.007 1.007 43 H -0.003 1.003 44 H 0.267 0.733 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.542 -25.516 20.210 33.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.317 6.317 3 C -0.030 4.030 4 C 0.023 3.977 5 H 0.151 0.849 6 O -0.311 6.311 7 C -0.069 4.069 8 C 0.298 3.702 9 O -0.415 6.415 10 N -0.297 5.297 11 C 0.084 3.916 12 C -0.189 4.189 13 C -0.070 4.070 14 C -0.252 4.252 15 C 0.077 3.923 16 O -0.261 6.261 17 C 0.011 3.989 18 C -0.011 4.011 19 C -0.582 4.582 20 H 0.093 0.907 21 C -0.201 4.201 22 N -0.573 5.573 23 Si 0.803 3.197 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.180 1.180 27 C -0.209 4.209 28 H 0.058 0.942 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.277 0.723 37 H 0.191 0.809 38 H 0.186 0.814 39 H 0.151 0.849 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.011 0.989 43 H 0.015 0.985 44 H 0.075 0.925 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.048 -25.334 18.976 32.660 hybrid contribution -0.151 0.934 -0.505 1.072 sum -8.199 -24.400 18.471 31.682 Atomic orbital electron populations 1.22983 0.78970 1.04243 1.00958 1.87798 1.21741 1.26518 1.95630 1.22956 0.91144 0.86319 1.02587 1.21913 0.93265 0.91246 0.91271 0.84943 1.88009 1.88107 1.22400 1.32574 1.23109 1.02057 0.78275 1.03474 1.20932 0.80076 0.87237 0.81958 1.90830 1.39035 1.71399 1.40259 1.43218 1.57805 1.10889 1.17829 1.17373 0.96898 0.83635 0.93722 1.21147 1.03496 0.97304 0.96948 1.21172 0.95067 0.92704 0.98031 1.21556 1.08088 1.02776 0.92739 1.19257 0.95508 0.90786 0.86731 1.86102 1.80080 1.26429 1.33539 1.22902 0.97865 0.78124 1.00038 1.18988 0.96033 0.94568 0.91509 1.21394 1.43216 0.97070 0.96519 0.90732 1.26125 0.95247 1.04131 0.94554 1.70143 1.47653 1.38375 1.01105 0.85223 0.78383 0.77343 0.78720 1.19572 1.20683 1.17966 1.20236 1.08687 0.91987 0.99979 0.94198 0.87834 0.92224 0.88742 0.93488 0.91484 0.89079 0.92450 0.72341 0.80924 0.81414 0.84883 0.91530 0.92015 0.98868 0.98489 0.92451 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 11.01 113.37 1.25 1.46 16 2 O -0.40 -5.36 8.83 -144.34 -1.27 -6.64 16 3 C 0.05 0.67 5.57 71.98 0.40 1.07 16 4 C 0.08 1.47 2.91 29.85 0.09 1.56 16 5 H 0.13 1.30 7.79 -2.39 -0.02 1.28 16 6 O -0.39 -9.44 9.88 -125.59 -1.24 -10.68 16 7 C 0.03 0.41 10.71 113.37 1.21 1.62 16 8 C 0.51 12.39 6.92 87.66 0.61 12.99 16 9 O -0.54 -20.19 14.19 15.94 0.23 -19.97 16 10 N -0.65 -11.40 5.22 -303.54 -1.59 -12.98 16 11 C 0.18 4.44 6.28 38.14 0.24 4.68 16 12 C -0.17 -3.10 9.96 22.41 0.22 -2.88 16 13 C -0.05 -1.08 10.03 22.24 0.22 -0.85 16 14 C -0.23 -7.06 9.04 22.39 0.20 -6.86 16 15 C 0.12 4.76 6.68 22.49 0.15 4.91 16 16 O -0.35 -16.36 10.13 -92.43 -0.94 -17.30 16 17 C 0.08 3.93 4.68 71.98 0.34 4.27 16 18 C 0.03 1.51 5.34 29.85 0.16 1.67 16 19 C -0.54 -31.59 9.11 25.60 0.23 -31.35 16 20 H 0.07 3.99 7.74 -2.91 -0.02 3.96 16 21 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 22 N -0.93 -58.68 13.29 21.45 0.28 -58.40 16 23 Si 0.98 44.37 29.54 68.60 2.03 46.39 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 27 C -0.19 -6.74 8.59 22.49 0.19 -6.54 16 28 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.09 0.74 7.93 -2.39 -0.02 0.72 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.92 6.40 -2.39 -0.02 0.91 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 0.67 8.08 -2.39 -0.02 0.65 16 36 H 0.44 2.96 8.70 -92.71 -0.81 2.15 16 37 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 38 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.13 3.93 6.29 -2.91 -0.02 3.91 16 40 H 0.07 2.82 7.67 -2.39 -0.02 2.80 16 41 H 0.06 2.67 7.65 -2.39 -0.02 2.66 16 42 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 43 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 44 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 45 H 0.11 4.47 6.42 -2.91 -0.02 4.45 16 Total: -1.00 -85.49 380.78 3.67 -81.82 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.19 Total: 11.68 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 5.98 Total: -13.94 kcal Atomic # 7 Polarization: -70.08 SS G_CDS: -1.30 Total: -71.38 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -3.23 Total: -54.58 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -85.49 3.67 -81.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596848721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.052 kcal (2) G-P(sol) polarization free energy of solvation -85.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds