Wall clock time and date at job start Tue Mar 31 2020 14:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99899 * 2 1 4 4 C 1.52996 * 109.47181 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47394 * 65.00052 * 4 3 2 6 6 C 1.37099 * 120.00322 * 83.39551 * 5 4 3 7 7 H 1.07997 * 119.99892 * 318.80674 * 6 5 4 8 8 C 1.38955 * 120.00387 * 138.79947 * 6 5 4 9 9 N 1.31408 * 119.99786 * 333.94431 * 8 6 5 10 10 Si 1.86795 * 120.00038 * 153.93770 * 8 6 5 11 11 H 1.48504 * 109.47165 * 94.99771 * 10 8 6 12 12 H 1.48496 * 109.46978 * 214.99669 * 10 8 6 13 13 H 1.48504 * 109.47220 * 334.99844 * 10 8 6 14 14 C 1.34780 * 119.99966 * 263.12696 * 5 4 3 15 15 O 1.21294 * 119.99755 * 184.00485 * 14 5 4 16 16 C 1.50698 * 120.00105 * 4.00141 * 14 5 4 17 17 H 1.09003 * 109.46598 * 35.26236 * 16 14 5 18 18 O 1.42898 * 109.46796 * 155.26105 * 16 14 5 19 19 C 1.42898 * 114.00274 * 270.00043 * 18 16 14 20 20 C 1.50701 * 109.47298 * 275.26437 * 16 14 5 21 21 C 1.38292 * 119.96890 * 288.87758 * 20 16 14 22 22 C 1.38242 * 120.10433 * 179.72760 * 21 20 16 23 23 C 1.38164 * 120.06129 * 0.54638 * 22 21 20 24 24 C 1.38716 * 119.93990 * 359.72790 * 23 22 21 25 25 O 1.35895 * 120.05373 * 179.97438 * 24 23 22 26 26 C 1.42904 * 117.00151 * 0.02562 * 25 24 23 27 27 C 1.38116 * 119.97053 * 109.14940 * 20 16 14 28 28 H 1.09004 * 109.47111 * 60.00309 * 1 2 3 29 29 H 1.09006 * 109.47198 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47236 * 300.00262 * 1 2 3 31 31 H 1.09006 * 109.47208 * 60.00083 * 3 2 1 32 32 H 1.09005 * 109.47220 * 300.00083 * 3 2 1 33 33 H 1.08999 * 109.47273 * 304.99797 * 4 3 2 34 34 H 1.09003 * 109.47330 * 185.00240 * 4 3 2 35 35 H 0.97000 * 119.99903 * 185.03125 * 9 8 6 36 36 H 1.09008 * 109.47356 * 300.00345 * 19 18 16 37 37 H 1.09000 * 109.47220 * 60.00013 * 19 18 16 38 38 H 1.09001 * 109.47274 * 180.02562 * 19 18 16 39 39 H 1.08000 * 119.94497 * 359.97438 * 21 20 16 40 40 H 1.08007 * 119.97084 * 180.25459 * 22 21 20 41 41 H 1.07996 * 120.02878 * 179.70973 * 23 22 21 42 42 H 1.09000 * 109.47108 * 300.00205 * 26 25 24 43 43 H 1.09002 * 109.47299 * 59.99938 * 26 25 24 44 44 H 1.08999 * 109.47238 * 180.02562 * 26 25 24 45 45 H 1.08001 * 120.03320 * 0.02562 * 27 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.1379 1.3300 -2.3764 7 1 3.4175 2.0987 -2.6142 8 6 5.2283 1.1176 -3.2111 9 7 6.3345 0.5984 -2.7277 10 14 5.1217 1.5700 -5.0203 11 1 5.6807 2.9306 -5.2242 12 1 5.8983 0.5905 -5.8220 13 1 3.7012 1.5485 -5.4530 14 6 4.2294 -0.7591 -1.2943 15 8 4.6640 -1.2604 -2.3097 16 6 3.9720 -1.6157 -0.0815 17 1 3.0916 -1.2459 0.4442 18 8 3.7499 -2.9667 -0.4910 19 6 2.3806 -3.2752 -0.7588 20 6 5.1659 -1.5588 0.8363 21 6 6.3448 -2.1855 0.4759 22 6 7.4435 -2.1303 1.3131 23 6 7.3628 -1.4581 2.5175 24 6 6.1796 -0.8335 2.8838 25 8 6.0975 -0.1721 4.0681 26 6 7.2687 -0.1597 4.8869 27 6 5.0800 -0.8855 2.0392 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8507 0.5686 0.8427 34 1 3.9784 2.1766 0.0903 35 1 7.1192 0.5175 -3.2920 36 1 1.7882 -3.1104 0.1413 37 1 2.0129 -2.6322 -1.5584 38 1 2.2960 -4.3185 -1.0631 39 1 6.4085 -2.7155 -0.4629 40 1 8.3644 -2.6170 1.0277 41 1 8.2200 -1.4192 3.1733 42 1 7.5449 -1.1830 5.1414 43 1 8.0869 0.3130 4.3436 44 1 7.0675 0.3998 5.8004 45 1 4.1576 -0.4003 2.3224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597755606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:30 Heat of formation + Delta-G solvation = -105.827746 kcal Electronic energy + Delta-G solvation = -29575.104465 eV Core-core repulsion = 25559.995085 eV Total energy + Delta-G solvation = -4015.109380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.00157 -38.90075 -37.49599 -36.82389 -36.31932 -33.97178 -32.17286 -31.24723 -30.04509 -28.79023 -27.33704 -26.85732 -25.96741 -25.69549 -23.92239 -22.30866 -21.95250 -21.01903 -19.22198 -17.79037 -16.83950 -16.24852 -16.16011 -15.80125 -15.66921 -15.56006 -15.25586 -15.08396 -14.87483 -14.60967 -14.33941 -13.78490 -13.53531 -13.41465 -13.21032 -12.79317 -12.53249 -12.37985 -12.18065 -11.77886 -11.67357 -11.53736 -11.31596 -11.21901 -10.96147 -10.87213 -10.77208 -10.74066 -10.68729 -10.49836 -10.11085 -10.03437 -9.57039 -9.28468 -8.66806 -8.53571 -7.83913 -7.61504 -6.98236 -6.04230 -3.72084 1.67508 1.91004 3.34310 3.41721 3.46674 3.48467 4.07672 4.12132 4.24992 4.43885 4.50738 5.03518 5.12136 5.18010 5.19058 5.27612 5.33830 5.44112 5.46048 5.53138 5.54206 5.70355 5.73262 5.78833 5.80215 5.83957 5.88596 5.91511 5.92749 6.07248 6.19706 6.20398 6.27270 6.33998 6.41741 6.57302 6.64658 6.91536 7.10008 7.13370 7.51282 7.66076 7.68325 7.75072 8.34453 9.14080 9.29416 9.75809 10.41346 11.04191 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010330 B = 0.005663 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.784061 B = 4942.858391 C = 5801.487493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.045 3.955 4 C 0.095 3.905 5 N -0.443 5.443 6 C -0.363 4.363 7 H 0.076 0.924 8 C 0.082 3.918 9 N -0.818 5.818 10 Si 0.905 3.095 11 H -0.285 1.285 12 H -0.284 1.284 13 H -0.272 1.272 14 C 0.471 3.529 15 O -0.521 6.521 16 C 0.110 3.890 17 H 0.095 0.905 18 O -0.362 6.362 19 C 0.040 3.960 20 C -0.028 4.028 21 C -0.104 4.104 22 C -0.085 4.085 23 C -0.209 4.209 24 C 0.116 3.884 25 O -0.320 6.320 26 C 0.030 3.970 27 C -0.143 4.143 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.035 0.965 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.263 0.737 36 H 0.036 0.964 37 H 0.044 0.956 38 H 0.078 0.922 39 H 0.130 0.870 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.095 0.905 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.132 -1.938 13.379 14.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.033 4.033 4 C -0.029 4.029 5 N -0.167 5.167 6 C -0.490 4.490 7 H 0.094 0.906 8 C -0.130 4.130 9 N -0.450 5.450 10 Si 0.732 3.268 11 H -0.212 1.212 12 H -0.210 1.210 13 H -0.197 1.197 14 C 0.257 3.743 15 O -0.398 6.398 16 C 0.049 3.951 17 H 0.113 0.887 18 O -0.280 6.280 19 C -0.057 4.057 20 C -0.029 4.029 21 C -0.122 4.122 22 C -0.103 4.103 23 C -0.228 4.228 24 C 0.072 3.928 25 O -0.234 6.234 26 C -0.065 4.065 27 C -0.161 4.161 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.148 0.852 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.113 0.887 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.623 -2.536 12.847 13.587 hybrid contribution -0.119 0.748 -0.804 1.104 sum -3.742 -1.788 12.043 12.737 Atomic orbital electron populations 1.22659 0.82237 1.02024 0.99461 1.87866 1.18717 1.28569 1.95285 1.23175 0.96074 0.84348 0.99663 1.21783 0.90788 1.00164 0.90209 1.43134 1.61304 1.04812 1.07402 1.18833 1.08946 1.20194 1.00979 0.90626 1.25120 0.93897 0.94836 0.99169 1.69895 1.00313 1.38755 1.36085 0.86328 0.78373 0.77143 0.84908 1.21202 1.20977 1.19726 1.20053 0.83179 0.82464 0.88617 1.90520 1.44470 1.71850 1.32940 1.21069 0.96026 0.84068 0.93953 0.88741 1.87872 1.25690 1.26133 1.88272 1.22679 0.83063 1.00588 0.99396 1.19331 0.95141 0.95946 0.92452 1.20980 0.91900 0.99505 0.99842 1.20882 0.98264 0.97893 0.93282 1.21109 0.97206 1.04747 0.99731 1.18762 0.94304 0.93897 0.85842 1.86026 1.37596 1.71012 1.28803 1.22972 0.87613 1.01697 0.94252 1.20145 0.97944 1.04393 0.93644 0.94353 0.90315 0.94680 0.93743 0.92707 0.91178 0.89882 0.92726 0.94570 0.93712 0.90397 0.85184 0.86058 0.86032 0.92993 0.92799 0.88685 0.85255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.39 -6.55 8.27 -35.23 -0.29 -6.84 16 3 C 0.05 0.76 6.24 37.16 0.23 0.99 16 4 C 0.10 1.93 5.61 -4.05 -0.02 1.91 16 5 N -0.44 -11.30 2.49 -114.82 -0.29 -11.59 16 6 C -0.36 -10.11 9.21 -14.93 -0.14 -10.24 16 7 H 0.08 2.01 7.95 -52.49 -0.42 1.60 16 8 C 0.08 2.35 4.11 -17.47 -0.07 2.28 16 9 N -0.82 -24.66 11.92 55.50 0.66 -24.00 16 10 Si 0.91 22.46 29.63 -169.99 -5.04 17.42 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.28 -7.22 7.11 56.52 0.40 -6.81 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.47 12.44 5.99 -10.98 -0.07 12.37 16 15 O -0.52 -16.05 14.21 -13.03 -0.19 -16.24 16 16 C 0.11 2.41 1.92 -29.04 -0.06 2.35 16 17 H 0.10 1.91 4.17 -51.93 -0.22 1.69 16 18 O -0.36 -7.84 9.65 -53.80 -0.52 -8.35 16 19 C 0.04 0.69 10.81 101.05 1.09 1.78 16 20 C -0.03 -0.58 4.73 -104.65 -0.50 -1.07 16 21 C -0.10 -2.16 9.27 -39.56 -0.37 -2.52 16 22 C -0.09 -1.48 10.04 -39.61 -0.40 -1.87 16 23 C -0.21 -3.30 9.04 -39.43 -0.36 -3.66 16 24 C 0.12 1.95 6.69 -39.21 -0.26 1.69 16 25 O -0.32 -4.73 10.50 -19.41 -0.20 -4.93 16 26 C 0.03 0.30 9.81 101.05 0.99 1.29 16 27 C -0.14 -2.61 8.27 -39.44 -0.33 -2.93 16 28 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.35 3.19 -51.93 -0.17 1.18 16 34 H 0.08 1.63 8.09 -51.93 -0.42 1.21 16 35 H 0.26 7.60 8.32 -40.82 -0.34 7.26 16 36 H 0.04 0.54 8.09 -51.92 -0.42 0.12 16 37 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.13 2.94 8.02 -52.49 -0.42 2.52 16 40 H 0.12 1.78 8.06 -52.48 -0.42 1.35 16 41 H 0.12 1.53 6.30 -52.49 -0.33 1.20 16 42 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 43 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.13 2.16 6.73 -52.49 -0.35 1.80 16 LS Contribution 370.12 15.07 5.58 5.58 Total: -1.00 -35.86 370.12 -5.89 -41.75 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.48 Total: 3.30 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 0.87 Total: 3.90 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.38 Total: -35.58 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -1.20 Total: -36.36 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.04 Total: 17.42 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.86 -5.89 -41.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.075 kcal (2) G-P(sol) polarization free energy of solvation -35.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds