Wall clock time and date at job start Tue Mar 31 2020 14:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00087 * 2 1 4 4 C 1.53002 * 109.47312 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.47155 * 64.99793 * 4 3 2 6 6 C 1.37097 * 120.00259 * 270.00718 * 5 4 3 7 7 H 1.07994 * 120.00346 * 138.33959 * 6 5 4 8 8 C 1.38952 * 119.99452 * 318.33009 * 6 5 4 9 9 N 1.31411 * 119.99660 * 163.42737 * 8 6 5 10 10 Si 1.86804 * 120.00385 * 343.43510 * 8 6 5 11 11 H 1.48500 * 109.47102 * 93.94905 * 10 8 6 12 12 H 1.48500 * 109.47107 * 213.95232 * 10 8 6 13 13 H 1.48502 * 109.46586 * 333.94978 * 10 8 6 14 14 C 1.34777 * 120.00063 * 89.99620 * 5 4 3 15 15 O 1.21293 * 120.00059 * 4.50707 * 14 5 4 16 16 C 1.50694 * 120.00381 * 184.49949 * 14 5 4 17 17 H 1.09008 * 109.47174 * 315.34137 * 16 14 5 18 18 O 1.42904 * 109.47367 * 195.34401 * 16 14 5 19 19 C 1.42900 * 114.00028 * 152.17198 * 18 16 14 20 20 C 1.50696 * 109.47449 * 75.34221 * 16 14 5 21 21 C 1.38290 * 119.97149 * 68.09242 * 20 16 14 22 22 C 1.38245 * 120.11454 * 180.02562 * 21 20 16 23 23 C 1.38163 * 120.05238 * 359.95767 * 22 21 20 24 24 C 1.38715 * 119.94579 * 0.02562 * 23 22 21 25 25 O 1.35903 * 120.05478 * 180.02562 * 24 23 22 26 26 C 1.42905 * 117.00071 * 0.02562 * 25 24 23 27 27 C 1.38123 * 119.97617 * 247.82410 * 20 16 14 28 28 H 1.09001 * 109.46927 * 60.00536 * 1 2 3 29 29 H 1.08998 * 109.47400 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47585 * 300.00465 * 1 2 3 31 31 H 1.09007 * 109.46866 * 59.99409 * 3 2 1 32 32 H 1.08999 * 109.47169 * 300.00177 * 3 2 1 33 33 H 1.09000 * 109.46702 * 304.99535 * 4 3 2 34 34 H 1.09000 * 109.47169 * 184.99944 * 4 3 2 35 35 H 0.97001 * 119.99936 * 185.01907 * 9 8 6 36 36 H 1.09004 * 109.46857 * 55.35439 * 19 18 16 37 37 H 1.08997 * 109.47266 * 295.35447 * 19 18 16 38 38 H 1.09003 * 109.46989 * 175.34514 * 19 18 16 39 39 H 1.08006 * 119.94455 * 359.97438 * 21 20 16 40 40 H 1.07997 * 119.97414 * 179.97438 * 22 21 20 41 41 H 1.08007 * 120.02997 * 180.02562 * 23 22 21 42 42 H 1.09005 * 109.47034 * 59.99518 * 26 25 24 43 43 H 1.08999 * 109.46977 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.46623 * 299.99485 * 26 25 24 45 45 H 1.08004 * 120.02595 * 359.97438 * 27 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.0979 -0.7991 -1.3345 7 1 3.7619 -1.3177 -2.2201 8 6 4.6533 -1.5132 -0.2798 9 7 4.4810 -2.8137 -0.2040 10 14 5.6448 -0.6245 1.0305 11 1 4.7586 -0.2751 2.1698 12 1 6.7391 -1.5078 1.5073 13 1 6.2247 0.6160 0.4559 14 6 4.2633 1.3329 -2.3200 15 8 4.2351 2.5416 -2.2228 16 6 4.6189 0.6910 -3.6361 17 1 5.3223 -0.1240 -3.4647 18 8 5.2176 1.6641 -4.4944 19 6 6.1289 1.1155 -5.4487 20 6 3.3710 0.1493 -4.2844 21 6 2.4021 1.0186 -4.7513 22 6 1.2559 0.5249 -5.3460 23 6 1.0761 -0.8388 -5.4761 24 6 2.0467 -1.7128 -5.0088 25 8 1.8724 -3.0546 -5.1360 26 6 0.6658 -3.4957 -5.7618 27 6 3.1984 -1.2147 -4.4167 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8507 0.5686 0.8428 34 1 3.9785 2.1766 0.0902 35 1 4.8057 -3.3018 0.5688 36 1 5.6243 0.3450 -6.0316 37 1 6.9805 0.6777 -4.9278 38 1 6.4769 1.9052 -6.1145 39 1 2.5406 2.0849 -4.6505 40 1 0.5004 1.2058 -5.7095 41 1 0.1807 -1.2241 -5.9411 42 1 0.6147 -3.0963 -6.7747 43 1 0.6535 -4.5849 -5.7999 44 1 -0.1911 -3.1422 -5.1882 45 1 3.9576 -1.8930 -4.0562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597755607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:33 Heat of formation + Delta-G solvation = -107.054967 kcal Electronic energy + Delta-G solvation = -29518.259004 eV Core-core repulsion = 25503.096408 eV Total energy + Delta-G solvation = -4015.162596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.05225 -39.08074 -37.66068 -36.81772 -36.40944 -34.71955 -31.92572 -31.63142 -30.08872 -29.38085 -27.34349 -26.98713 -25.87112 -25.29847 -24.37175 -22.50930 -22.13502 -20.98350 -19.06161 -17.75209 -17.31854 -16.57071 -16.09918 -15.85073 -15.57957 -15.45132 -15.32268 -15.20641 -15.10712 -14.48266 -14.42724 -14.22097 -13.56665 -13.52818 -13.31236 -13.02836 -12.63953 -12.42597 -12.33958 -12.11190 -11.80240 -11.67401 -11.57309 -11.37350 -11.17853 -10.90132 -10.84463 -10.76279 -10.73987 -10.53623 -10.01573 -9.87601 -9.45580 -9.09932 -9.03344 -8.72040 -8.24350 -7.80234 -7.68729 -6.31441 -3.99620 1.65230 1.88053 3.09355 3.25162 3.31996 3.48020 3.66678 3.84141 4.13953 4.20285 4.45759 4.82622 5.05305 5.08391 5.18244 5.24504 5.28675 5.44297 5.56169 5.59170 5.61858 5.69641 5.71718 5.78366 5.81911 5.83032 5.87327 5.94940 5.96351 6.00409 6.03451 6.06751 6.11178 6.30427 6.40127 6.47460 6.66353 6.80154 7.01183 7.10418 7.39987 7.58191 7.74985 7.83959 8.15900 8.36827 9.02900 9.38760 9.68584 10.75650 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.009950 B = 0.006218 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.260126 B = 4502.256038 C = 5153.487085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.056 3.944 4 C 0.101 3.899 5 N -0.450 5.450 6 C -0.341 4.341 7 H 0.114 0.886 8 C 0.075 3.925 9 N -0.859 5.859 10 Si 0.872 3.128 11 H -0.274 1.274 12 H -0.289 1.289 13 H -0.262 1.262 14 C 0.491 3.509 15 O -0.581 6.581 16 C 0.128 3.872 17 H 0.098 0.902 18 O -0.359 6.359 19 C 0.029 3.971 20 C -0.054 4.054 21 C -0.126 4.126 22 C -0.093 4.093 23 C -0.209 4.209 24 C 0.122 3.878 25 O -0.314 6.314 26 C 0.030 3.970 27 C -0.115 4.115 28 H 0.031 0.969 29 H 0.080 0.920 30 H 0.029 0.971 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.273 0.727 36 H 0.040 0.960 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.050 0.950 43 H 0.096 0.904 44 H 0.052 0.948 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.091 1.477 -8.062 10.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C -0.022 4.022 4 C -0.022 4.022 5 N -0.171 5.171 6 C -0.468 4.468 7 H 0.131 0.869 8 C -0.132 4.132 9 N -0.494 5.494 10 Si 0.701 3.299 11 H -0.201 1.201 12 H -0.216 1.216 13 H -0.186 1.186 14 C 0.279 3.721 15 O -0.464 6.464 16 C 0.067 3.933 17 H 0.116 0.884 18 O -0.276 6.276 19 C -0.068 4.068 20 C -0.055 4.055 21 C -0.145 4.145 22 C -0.111 4.111 23 C -0.228 4.228 24 C 0.077 3.923 25 O -0.227 6.227 26 C -0.065 4.065 27 C -0.134 4.134 28 H 0.050 0.950 29 H 0.098 0.902 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.143 0.857 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.068 0.932 43 H 0.114 0.886 44 H 0.071 0.929 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.810 1.742 -7.857 9.926 hybrid contribution -0.159 0.113 0.777 0.801 sum -5.969 1.855 -7.080 9.445 Atomic orbital electron populations 1.22640 0.83158 1.01997 0.98625 1.88230 1.17543 1.26456 1.94975 1.22854 0.94893 0.85303 0.99157 1.21734 0.92223 0.99052 0.89146 1.43520 1.57624 1.07121 1.08845 1.19291 1.40605 0.79041 1.07820 0.86897 1.25305 0.95473 0.94972 0.97489 1.69662 1.43196 1.07103 1.29447 0.87007 0.80406 0.80420 0.82106 1.20105 1.21584 1.18592 1.19828 0.80244 0.86551 0.85470 1.90549 1.56642 1.14218 1.85007 1.20580 0.92666 0.91456 0.88600 0.88419 1.87991 1.59682 1.32332 1.47644 1.22799 0.92439 0.99342 0.92189 1.19772 0.96370 0.92387 0.96950 1.20916 0.93597 1.00162 0.99785 1.20787 0.97212 0.94307 0.98819 1.21122 1.00010 0.94244 1.07392 1.18888 0.94684 0.82160 0.96594 1.86117 1.40496 1.19921 1.76174 1.22971 0.86190 1.00715 0.96622 1.20404 0.97431 0.94756 1.00787 0.94991 0.90191 0.95261 0.93953 0.93468 0.90741 0.89639 0.91632 0.94090 0.93983 0.89900 0.85706 0.86327 0.86115 0.93176 0.88605 0.92925 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.35 -7.72 10.18 -35.23 -0.36 -8.08 16 3 C 0.06 1.13 6.28 37.16 0.23 1.37 16 4 C 0.10 2.29 4.62 -4.05 -0.02 2.27 16 5 N -0.45 -10.98 2.10 -114.82 -0.24 -11.22 16 6 C -0.34 -8.81 8.10 -14.93 -0.12 -8.93 16 7 H 0.11 3.01 4.43 -52.49 -0.23 2.78 16 8 C 0.08 1.99 5.37 -17.47 -0.09 1.90 16 9 N -0.86 -23.77 13.95 55.50 0.77 -23.00 16 10 Si 0.87 20.69 24.89 -169.99 -4.23 16.46 16 11 H -0.27 -6.31 6.70 56.52 0.38 -5.93 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 14 C 0.49 11.81 6.74 -10.99 -0.07 11.74 16 15 O -0.58 -14.98 16.13 -13.88 -0.22 -15.21 16 16 C 0.13 2.69 1.98 -29.04 -0.06 2.63 16 17 H 0.10 2.04 6.94 -51.92 -0.36 1.68 16 18 O -0.36 -7.13 9.67 -54.66 -0.53 -7.66 16 19 C 0.03 0.44 10.79 101.05 1.09 1.53 16 20 C -0.05 -1.06 4.41 -104.65 -0.46 -1.52 16 21 C -0.13 -2.32 9.25 -39.56 -0.37 -2.68 16 22 C -0.09 -1.46 10.04 -39.61 -0.40 -1.86 16 23 C -0.21 -3.22 9.04 -39.43 -0.36 -3.58 16 24 C 0.12 2.15 6.69 -39.22 -0.26 1.89 16 25 O -0.31 -5.26 10.50 -19.44 -0.20 -5.46 16 26 C 0.03 0.35 9.81 101.05 0.99 1.34 16 27 C -0.12 -2.24 7.85 -39.44 -0.31 -2.55 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.73 8.14 -51.92 -0.42 0.30 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.73 3.35 -51.93 -0.17 1.56 16 34 H 0.09 1.85 7.36 -51.93 -0.38 1.47 16 35 H 0.27 7.13 8.32 -40.82 -0.34 6.79 16 36 H 0.04 0.57 8.06 -51.93 -0.42 0.15 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 40 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.12 1.50 6.30 -52.48 -0.33 1.16 16 42 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16 45 H 0.14 2.82 7.18 -52.48 -0.38 2.44 16 LS Contribution 368.83 15.07 5.56 5.56 Total: -1.00 -32.32 368.83 -5.00 -37.33 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.46 Total: 6.08 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 0.91 Total: 5.20 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.53 Total: -34.21 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -1.31 Total: -36.41 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.23 Total: 16.46 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.32 -5.00 -37.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.729 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds