Wall clock time and date at job start Tue Mar 31 2020 14:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86806 * 119.99656 * 2 1 4 4 H 1.48499 * 109.47129 * 239.99984 * 3 2 1 5 5 H 1.48503 * 109.47174 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46861 * 120.00426 * 3 2 1 7 7 C 1.37875 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99924 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46820 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.46765 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99882 * 180.02562 * 11 10 9 13 13 O 1.21586 * 120.00122 * 355.01527 * 12 11 10 14 14 N 1.34773 * 119.99811 * 175.02043 * 12 11 10 15 15 C 1.46922 * 120.63510 * 5.13858 * 14 12 11 16 16 C 1.53191 * 108.77759 * 126.41288 * 15 14 12 17 17 C 1.53043 * 109.30993 * 54.63741 * 16 15 14 18 18 H 1.08998 * 109.46272 * 58.65618 * 17 16 15 19 19 C 1.53003 * 109.46085 * 178.61416 * 17 16 15 20 20 F 1.39901 * 109.47231 * 186.39462 * 19 17 16 21 21 F 1.39901 * 109.46913 * 306.39914 * 19 17 16 22 22 F 1.39897 * 109.46888 * 66.39671 * 19 17 16 23 23 C 1.53038 * 109.53996 * 298.63838 * 17 16 15 24 24 H 1.09006 * 109.52508 * 301.39224 * 23 17 16 25 25 C 1.52999 * 109.49767 * 181.31841 * 23 17 16 26 26 N 1.46905 * 109.47125 * 176.86623 * 25 23 17 27 27 C 1.46931 * 120.62905 * 185.16448 * 14 12 11 28 28 H 0.96994 * 120.00093 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46949 * 60.00378 * 9 7 2 30 30 H 1.08996 * 109.47129 * 300.00202 * 9 7 2 31 31 H 1.09001 * 109.47006 * 60.00468 * 10 9 7 32 32 H 1.08996 * 109.47479 * 300.00042 * 10 9 7 33 33 H 0.96998 * 119.99969 * 359.97438 * 11 10 9 34 34 H 1.08994 * 109.59073 * 246.20524 * 15 14 12 35 35 H 1.09008 * 109.58190 * 6.48536 * 15 14 12 36 36 H 1.08997 * 109.50307 * 174.58807 * 16 15 14 37 37 H 1.09004 * 109.49807 * 294.66064 * 16 15 14 38 38 H 1.09005 * 109.47201 * 296.86454 * 25 23 17 39 39 H 1.08998 * 109.47650 * 56.87077 * 25 23 17 40 40 H 1.00905 * 110.99991 * 56.04386 * 26 25 23 41 41 H 1.00895 * 110.99914 * 179.97438 * 26 25 23 42 42 H 1.08999 * 109.58431 * 113.79846 * 27 14 12 43 43 H 1.09004 * 109.58828 * 353.37548 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 7 1.5130 -4.9308 -0.0024 12 6 2.1870 -6.0979 -0.0031 13 8 3.3994 -6.0998 -0.0946 14 7 1.5170 -7.2630 0.0977 15 6 0.0479 -7.2843 0.0959 16 6 -0.4299 -8.2513 -0.9920 17 6 0.2183 -9.6202 -0.7726 18 1 -0.0468 -9.9932 0.2166 19 6 -0.2832 -10.5982 -1.8370 20 9 0.1933 -11.8823 -1.5521 21 9 -1.6822 -10.6093 -1.8378 22 9 0.1807 -10.1970 -3.0944 23 6 1.7395 -9.4889 -0.8771 24 1 2.0045 -9.0929 -1.8575 25 6 2.3848 -10.8635 -0.6903 26 7 3.8389 -10.7497 -0.8651 27 6 2.2418 -8.5359 0.2120 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6249 -2.5571 0.8896 31 1 2.8728 -3.6046 0.8878 32 1 2.8715 -3.6038 -0.8922 33 1 0.5431 -4.9308 -0.0016 34 1 -0.3139 -7.6200 1.0676 35 1 -0.3318 -6.2834 -0.1096 36 1 -1.5142 -8.3498 -0.9407 37 1 -0.1454 -7.8663 -1.9714 38 1 2.1671 -11.2339 0.3115 39 1 1.9833 -11.5569 -1.4293 40 1 4.2264 -10.0641 -0.2342 41 1 4.2886 -11.6450 -0.7461 42 1 2.0589 -8.9737 1.1933 43 1 3.3098 -8.3614 0.0808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599918931.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:46 Heat of formation + Delta-G solvation = -210.415273 kcal Electronic energy + Delta-G solvation = -28556.811620 eV Core-core repulsion = 24027.602995 eV Total energy + Delta-G solvation = -4529.208625 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.19254 -48.69075 -48.58777 -41.56209 -39.31944 -36.62077 -36.11080 -34.78493 -34.20869 -31.83650 -31.15093 -28.40360 -26.97036 -25.95576 -24.62959 -22.97296 -22.89450 -21.77449 -20.83875 -19.55517 -19.37459 -19.22732 -18.52090 -18.29139 -17.38730 -16.82810 -16.61293 -16.47700 -16.11851 -15.75843 -15.44689 -15.37767 -15.22751 -15.15434 -15.05221 -14.90263 -14.73526 -14.49729 -14.38244 -14.23309 -14.18088 -13.83505 -13.70503 -13.20474 -12.91736 -12.58967 -12.53021 -12.32494 -12.25071 -12.15238 -11.86244 -11.72235 -11.64909 -11.45006 -11.12523 -10.58731 -10.17612 -9.60416 -9.52724 -8.22848 -6.32895 1.42842 1.45163 1.52560 1.61644 1.73587 2.12332 2.41698 2.75666 2.89794 2.95404 2.99208 3.12064 3.45649 3.61652 3.78284 3.90984 3.97021 4.10551 4.20206 4.31301 4.41492 4.46433 4.53136 4.57102 4.60954 4.74079 4.79153 4.87206 4.88496 4.97546 5.16989 5.31487 5.48370 5.53695 5.60616 5.79035 5.89930 6.18436 6.21780 6.56204 6.79830 6.97283 7.36294 7.55155 8.88817 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.002590 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.323287 B =10810.020172 C =11637.864439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.160 3.840 11 N -0.734 5.734 12 C 0.700 3.300 13 O -0.635 6.635 14 N -0.628 5.628 15 C 0.110 3.890 16 C -0.131 4.131 17 C -0.119 4.119 18 H 0.148 0.852 19 C 0.455 3.545 20 F -0.179 7.179 21 F -0.183 7.183 22 F -0.192 7.192 23 C -0.093 4.093 24 H 0.070 0.930 25 C 0.050 3.950 26 N -0.863 5.863 27 C 0.138 3.862 28 H 0.266 0.734 29 H 0.007 0.993 30 H 0.011 0.989 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.405 0.595 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.343 0.657 41 H 0.353 0.647 42 H 0.093 0.907 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.701 -26.381 1.209 26.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.012 4.012 10 C 0.036 3.964 11 N -0.390 5.390 12 C 0.401 3.599 13 O -0.516 6.516 14 N -0.365 5.365 15 C -0.012 4.012 16 C -0.169 4.169 17 C -0.138 4.138 18 H 0.166 0.834 19 C 0.401 3.599 20 F -0.160 7.160 21 F -0.165 7.165 22 F -0.174 7.174 23 C -0.113 4.113 24 H 0.088 0.912 25 C -0.081 4.081 26 N -0.395 5.395 27 C 0.015 3.985 28 H 0.075 0.925 29 H 0.026 0.974 30 H 0.029 0.971 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.243 0.757 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.134 0.866 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.157 0.843 41 H 0.167 0.833 42 H 0.111 0.889 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.169 -26.038 0.396 26.233 hybrid contribution -0.087 0.583 0.465 0.750 sum -3.256 -25.455 0.861 25.677 Atomic orbital electron populations 1.70042 1.07469 1.28048 1.50962 1.25841 0.95789 1.02975 0.94412 0.85526 0.78336 0.78248 0.79108 1.19476 1.20575 1.19308 1.21438 0.93598 0.91939 1.51612 0.92352 1.19109 0.94188 0.91569 0.96340 1.21077 0.94652 0.81178 0.99537 1.45401 1.10380 1.04465 1.78793 1.16083 0.84916 0.81287 0.77616 1.90856 1.14001 1.86869 1.59919 1.47298 1.07253 1.04504 1.77404 1.21848 0.78057 1.00854 1.00477 1.22006 1.02571 0.92178 1.00137 1.22524 0.96838 0.95237 0.99230 0.83405 1.20754 0.75242 0.81120 0.82772 1.93079 1.87235 1.42339 1.93373 1.93182 1.30068 1.96561 1.96660 1.93181 1.88617 1.90496 1.45065 1.21519 0.92122 0.96890 1.00786 0.91175 1.22296 0.88828 0.95146 1.01807 1.58691 1.04142 1.14301 1.62397 1.21518 0.97497 0.81144 0.98359 0.92533 0.97441 0.97108 0.93683 0.94135 0.75723 0.87649 0.89383 0.86620 0.91607 0.92797 0.89290 0.84348 0.83287 0.88874 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.79 13.29 21.45 0.28 -53.50 16 2 C 0.01 0.49 5.46 84.65 0.46 0.95 16 3 Si 0.96 43.43 29.54 68.60 2.03 45.45 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.55 -30.50 9.11 25.60 0.23 -30.26 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.03 1.27 5.09 29.85 0.15 1.43 16 10 C 0.16 6.94 5.62 86.38 0.49 7.42 16 11 N -0.73 -25.60 5.47 -478.53 -2.62 -28.22 16 12 C 0.70 23.94 8.29 179.06 1.49 25.42 16 13 O -0.63 -27.13 15.77 -3.99 -0.06 -27.19 16 14 N -0.63 -14.56 2.97 -836.92 -2.49 -17.04 16 15 C 0.11 1.67 6.39 86.36 0.55 2.22 16 16 C -0.13 -1.70 5.11 30.67 0.16 -1.54 16 17 C -0.12 -1.42 1.79 -10.77 -0.02 -1.44 16 18 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 19 C 0.46 6.84 2.55 71.98 0.18 7.03 16 20 F -0.18 -2.65 13.99 44.97 0.63 -2.02 16 21 F -0.18 -2.83 16.53 44.97 0.74 -2.08 16 22 F -0.19 -3.84 16.34 44.97 0.73 -3.10 16 23 C -0.09 -1.51 1.90 -10.72 -0.02 -1.53 16 24 H 0.07 1.59 7.71 -2.38 -0.02 1.57 16 25 C 0.05 0.69 5.59 86.30 0.48 1.17 16 26 N -0.86 -13.37 9.62 -186.71 -1.80 -15.17 16 27 C 0.14 2.61 5.32 86.36 0.46 3.07 16 28 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 29 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.40 11.93 5.96 -92.71 -0.55 11.37 16 34 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 1.43 5.64 -2.38 -0.01 1.41 16 36 H 0.12 1.03 7.61 -2.39 -0.02 1.02 16 37 H 0.07 1.14 8.01 -2.38 -0.02 1.12 16 38 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 39 H 0.09 1.34 5.23 -2.39 -0.01 1.33 16 40 H 0.34 5.34 7.30 -89.69 -0.65 4.69 16 41 H 0.35 4.06 9.08 -89.70 -0.81 3.25 16 42 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.08 1.98 5.77 -2.39 -0.01 1.97 16 Total: -1.00 -70.69 350.54 1.12 -69.57 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -0.94 Total: 19.38 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 4.61 Total: 13.94 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -6.61 Total: -113.94 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.06 Total: -27.19 kcal Atomic # 9 Polarization: -9.31 SS G_CDS: 2.11 Total: -7.21 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -70.69 1.12 -69.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599918931.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.846 kcal (2) G-P(sol) polarization free energy of solvation -70.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds