Wall clock time and date at job start Tue Mar 31 2020 14:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86801 * 119.99792 * 2 1 4 4 H 1.48504 * 109.47003 * 270.00222 * 3 2 1 5 5 H 1.48501 * 109.47350 * 30.00144 * 3 2 1 6 6 H 1.48496 * 109.46918 * 150.00501 * 3 2 1 7 7 C 1.37872 * 119.99642 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99518 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00510 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47129 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.34779 * 120.00099 * 180.02562 * 11 10 9 13 13 O 1.21589 * 119.99609 * 355.01467 * 12 11 10 14 14 N 1.34771 * 120.00029 * 175.01895 * 12 11 10 15 15 C 1.46924 * 120.63104 * 4.99125 * 14 12 11 16 16 C 1.53198 * 108.77673 * 233.58671 * 15 14 12 17 17 C 1.53049 * 109.31243 * 305.36615 * 16 15 14 18 18 H 1.09001 * 109.45870 * 301.34660 * 17 16 15 19 19 C 1.52995 * 109.45932 * 181.38258 * 17 16 15 20 20 F 1.39904 * 109.47111 * 53.74113 * 19 17 16 21 21 F 1.39904 * 109.47090 * 173.73540 * 19 17 16 22 22 F 1.39900 * 109.47232 * 293.73665 * 19 17 16 23 23 C 1.53048 * 109.53671 * 61.36253 * 17 16 15 24 24 H 1.08999 * 109.49618 * 58.58515 * 23 17 16 25 25 C 1.52999 * 109.49542 * 178.68589 * 23 17 16 26 26 N 1.46902 * 109.47043 * 182.92273 * 25 23 17 27 27 C 1.46930 * 120.62857 * 184.96914 * 14 12 11 28 28 H 0.97003 * 119.99712 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.46370 * 60.00612 * 9 7 2 30 30 H 1.08999 * 109.47184 * 300.00665 * 9 7 2 31 31 H 1.08998 * 109.47339 * 60.00610 * 10 9 7 32 32 H 1.08999 * 109.47393 * 300.00246 * 10 9 7 33 33 H 0.97000 * 120.00113 * 359.97438 * 11 10 9 34 34 H 1.09003 * 109.58571 * 113.80276 * 15 14 12 35 35 H 1.08999 * 109.70430 * 353.44302 * 15 14 12 36 36 H 1.08994 * 109.49789 * 185.41380 * 16 15 14 37 37 H 1.08994 * 109.52222 * 65.33054 * 16 15 14 38 38 H 1.09004 * 109.46504 * 302.91861 * 25 23 17 39 39 H 1.08998 * 109.47152 * 62.92051 * 25 23 17 40 40 H 1.00896 * 110.99652 * 56.04316 * 26 25 23 41 41 H 1.00898 * 110.99820 * 179.97438 * 26 25 23 42 42 H 1.08998 * 109.58804 * 246.19555 * 27 14 12 43 43 H 1.08993 * 109.58938 * 6.62468 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0980 -0.0007 13 8 3.3992 -6.0999 -0.0914 14 7 1.5166 -7.2629 0.1000 15 6 0.0475 -7.2839 0.1004 16 6 -0.4345 -8.0473 1.3380 17 6 0.2139 -9.4334 1.3621 18 1 -0.0479 -9.9726 0.4517 19 6 -0.2918 -10.2116 2.5784 20 9 -1.6908 -10.2255 2.5745 21 9 0.1876 -11.5248 2.5241 22 9 0.1653 -9.5963 3.7487 23 6 1.7348 -9.2856 1.4476 24 1 1.9959 -8.7249 2.3451 25 6 2.3801 -10.6717 1.5046 26 7 3.8342 -10.5289 1.6571 27 6 2.2413 -8.5362 0.2112 28 1 -0.4850 0.8401 -0.0004 29 1 0.6242 -2.5566 -0.8904 30 1 0.6247 -2.5571 0.8896 31 1 2.8719 -3.6044 0.8895 32 1 2.8720 -3.6043 -0.8905 33 1 0.5428 -4.9308 -0.0011 34 1 -0.3110 -7.7835 -0.7997 35 1 -0.3346 -6.2634 0.1287 36 1 -1.5187 -8.1534 1.3007 37 1 -0.1534 -7.4985 2.2368 38 1 1.9783 -11.2248 2.3536 39 1 2.1627 -11.2119 0.5832 40 1 4.0599 -9.9758 2.4703 41 1 4.2838 -11.4312 1.6977 42 1 2.0617 -9.1379 -0.6797 43 1 3.3088 -8.3414 0.3139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599918936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:49 Heat of formation + Delta-G solvation = -187.551496 kcal Electronic energy + Delta-G solvation = -28594.091071 eV Core-core repulsion = 24065.873894 eV Total energy + Delta-G solvation = -4528.217177 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.53912 -48.04623 -47.90984 -40.38134 -38.22073 -35.24870 -34.88326 -33.33901 -32.77388 -30.91193 -29.52760 -27.49239 -25.64165 -24.49117 -23.66886 -22.23527 -21.24962 -20.82335 -19.67274 -18.71801 -18.67333 -18.29247 -17.47570 -16.48836 -16.14261 -15.95488 -15.42655 -15.36650 -14.92215 -14.77395 -14.52658 -14.51490 -14.29554 -14.20295 -14.09639 -13.86315 -13.81174 -13.55503 -13.29431 -13.00991 -12.81873 -12.65356 -12.36496 -12.25272 -11.61603 -11.42102 -11.22108 -11.07064 -11.02122 -10.96087 -10.62290 -10.31743 -9.88308 -9.53985 -9.25788 -8.94861 -8.75708 -8.46313 -8.21191 -6.08894 -4.11341 2.37078 2.83104 3.30284 3.35794 3.36422 3.40968 3.54649 3.56028 3.61554 4.04657 4.20284 4.28813 4.44269 4.48910 4.62726 4.71687 4.80449 4.95915 5.03338 5.11422 5.23321 5.28380 5.38419 5.43375 5.46140 5.65735 5.86222 5.96043 6.27457 6.40708 6.54189 6.77680 6.77976 6.99575 7.11449 7.14059 7.55733 7.63267 7.90283 8.24485 8.36464 8.92390 8.97920 9.53460 11.02786 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020751 B = 0.002659 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.039483 B =10527.936228 C =11316.542095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.739 5.739 12 C 0.703 3.297 13 O -0.590 6.590 14 N -0.639 5.639 15 C 0.116 3.884 16 C -0.135 4.135 17 C -0.126 4.126 18 H 0.118 0.882 19 C 0.453 3.547 20 F -0.182 7.182 21 F -0.181 7.181 22 F -0.180 7.180 23 C -0.100 4.100 24 H 0.088 0.912 25 C 0.046 3.954 26 N -0.847 5.847 27 C 0.151 3.849 28 H 0.262 0.738 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.391 0.609 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.077 0.923 40 H 0.343 0.657 41 H 0.343 0.657 42 H 0.063 0.937 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.032 -25.374 3.942 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.016 3.984 11 N -0.395 5.395 12 C 0.404 3.596 13 O -0.468 6.468 14 N -0.378 5.378 15 C -0.008 4.008 16 C -0.173 4.173 17 C -0.146 4.146 18 H 0.136 0.864 19 C 0.399 3.601 20 F -0.164 7.164 21 F -0.162 7.162 22 F -0.162 7.162 23 C -0.120 4.120 24 H 0.106 0.894 25 C -0.085 4.085 26 N -0.377 5.377 27 C 0.027 3.973 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.227 0.773 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.081 0.919 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.305 -24.841 3.204 25.152 hybrid contribution -0.522 0.218 1.182 1.311 sum -2.827 -24.622 4.386 25.169 Atomic orbital electron populations 1.69961 1.06081 1.26837 1.50508 1.24994 0.94896 0.99398 0.95012 0.86510 0.79854 0.82989 0.78201 1.20563 1.21202 1.19704 1.21052 0.93286 0.90343 1.51189 0.92205 1.19320 0.94251 0.91118 0.97732 1.21603 0.95662 0.80423 1.00690 1.45724 1.09849 1.05371 1.78535 1.15956 0.85353 0.80327 0.77916 1.90894 1.11931 1.86073 1.57938 1.47363 1.05557 1.05923 1.78946 1.21529 0.80806 1.01545 0.96967 1.22039 1.01155 0.93116 1.01030 1.22536 0.98327 0.98216 0.95515 0.86388 1.20694 0.75429 0.78082 0.85884 1.93185 1.29993 1.96402 1.96800 1.93090 1.87179 1.39273 1.96650 1.93190 1.88697 1.82594 1.51690 1.21660 0.90742 0.97643 1.01992 0.89352 1.22302 0.88750 0.95223 1.02267 1.58617 1.08527 1.21768 1.48807 1.21277 0.99039 0.82175 0.94784 0.92880 0.96006 0.96037 0.92838 0.92669 0.77292 0.90898 0.89142 0.89024 0.89798 0.93105 0.90466 0.84438 0.84400 0.91855 0.86987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.14 2.98 5.62 -4.04 -0.02 2.96 16 11 N -0.74 -13.06 5.47 -65.23 -0.36 -13.42 16 12 C 0.70 12.32 8.30 -86.92 -0.72 11.60 16 13 O -0.59 -12.68 15.78 5.29 0.08 -12.60 16 14 N -0.64 -8.10 2.97 -178.49 -0.53 -8.63 16 15 C 0.12 1.05 6.43 -3.71 -0.02 1.03 16 16 C -0.13 -1.05 5.11 -26.60 -0.14 -1.18 16 17 C -0.13 -0.92 1.79 -90.57 -0.16 -1.08 16 18 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 19 C 0.45 3.75 2.55 37.16 0.09 3.84 16 20 F -0.18 -1.61 16.53 2.25 0.04 -1.57 16 21 F -0.18 -1.49 13.98 2.25 0.03 -1.46 16 22 F -0.18 -1.76 16.34 2.25 0.04 -1.73 16 23 C -0.10 -0.87 1.83 -90.49 -0.17 -1.03 16 24 H 0.09 0.90 7.71 -51.93 -0.40 0.50 16 25 C 0.05 0.34 5.51 -3.82 -0.02 0.32 16 26 N -0.85 -6.54 9.11 -10.37 -0.09 -6.64 16 27 C 0.15 1.67 5.50 -3.71 -0.02 1.65 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.02 0.56 8.14 -51.92 -0.42 0.13 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.39 5.95 5.93 -40.82 -0.24 5.71 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.84 5.57 -51.93 -0.29 0.55 16 36 H 0.09 0.57 7.62 -51.93 -0.40 0.18 16 37 H 0.08 0.77 8.00 -51.93 -0.42 0.35 16 38 H 0.05 0.38 5.24 -51.93 -0.27 0.11 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.34 2.61 8.99 -39.29 -0.35 2.26 16 41 H 0.34 2.04 9.08 -39.29 -0.36 1.69 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.11 1.56 6.76 -51.93 -0.35 1.21 16 LS Contribution 352.73 15.07 5.32 5.32 Total: -1.00 -32.41 352.73 -7.49 -39.90 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.00 Total: 4.64 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -1.73 Total: 5.12 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.25 Total: -53.96 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.60 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.11 Total: -4.76 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.41 -7.49 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599918936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.647 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds