Wall clock time and date at job start Tue Mar 31 2020 14:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99894 * 2 1 4 4 H 1.48501 * 109.47435 * 270.00001 * 3 2 1 5 5 H 1.48497 * 109.47217 * 30.00560 * 3 2 1 6 6 H 1.48505 * 109.46852 * 150.00189 * 3 2 1 7 7 C 1.37871 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00308 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00083 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47471 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47344 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00064 * 180.02562 * 11 10 9 13 13 O 1.21588 * 119.99873 * 4.94970 * 12 11 10 14 14 N 1.34780 * 120.00135 * 184.95371 * 12 11 10 15 15 C 1.46927 * 120.62574 * 354.40740 * 14 12 11 16 16 C 1.53194 * 108.88971 * 233.55812 * 15 14 12 17 17 C 1.53073 * 109.29591 * 305.57879 * 16 15 14 18 18 H 1.09002 * 109.34811 * 301.13303 * 17 16 15 19 19 C 1.52996 * 109.45503 * 181.24074 * 17 16 15 20 20 F 1.39900 * 109.47389 * 306.96648 * 19 17 16 21 21 F 1.39905 * 109.46828 * 66.96856 * 19 17 16 22 22 F 1.39902 * 109.47553 * 186.96597 * 19 17 16 23 23 C 1.53049 * 109.65889 * 61.15288 * 17 16 15 24 24 H 1.08999 * 109.49621 * 178.74926 * 23 17 16 25 25 C 1.53000 * 109.49665 * 58.65184 * 23 17 16 26 26 N 1.46896 * 109.47098 * 182.99749 * 25 23 17 27 27 C 1.46921 * 120.62992 * 174.42716 * 14 12 11 28 28 H 0.97002 * 119.99819 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46993 * 59.99898 * 9 7 2 30 30 H 1.09003 * 109.47414 * 300.00254 * 9 7 2 31 31 H 1.08997 * 109.47288 * 59.99843 * 10 9 7 32 32 H 1.09001 * 109.46710 * 299.99609 * 10 9 7 33 33 H 0.96996 * 119.99889 * 359.97438 * 11 10 9 34 34 H 1.09001 * 109.59019 * 353.41091 * 15 14 12 35 35 H 1.08996 * 109.59009 * 113.70422 * 15 14 12 36 36 H 1.09002 * 109.49987 * 65.38961 * 16 15 14 37 37 H 1.08998 * 109.49701 * 185.48857 * 16 15 14 38 38 H 1.09001 * 109.47024 * 302.99726 * 25 23 17 39 39 H 1.09002 * 109.47183 * 62.99565 * 25 23 17 40 40 H 1.00900 * 110.99676 * 56.04757 * 26 25 23 41 41 H 1.00906 * 110.99850 * 179.97438 * 26 25 23 42 42 H 1.09003 * 109.58571 * 246.15247 * 27 14 12 43 43 H 1.08994 * 109.59046 * 6.43819 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0979 -0.0007 13 8 3.3991 -6.0999 0.0910 14 7 1.5167 -7.2630 -0.1021 15 6 0.0476 -7.2851 -0.0907 16 6 -0.4254 -8.2568 0.9950 17 6 0.2250 -9.6239 0.7685 18 1 -0.0464 -9.9935 -0.2204 19 6 -0.2690 -10.6058 1.8327 20 9 -0.0670 -10.0568 3.1035 21 9 -1.6330 -10.8523 1.6426 22 9 0.4412 -11.8064 1.7252 23 6 1.7468 -9.4921 0.8635 24 1 2.2061 -10.4707 0.7239 25 6 2.1267 -8.9405 2.2391 26 7 3.5814 -8.7467 2.3042 27 6 2.2414 -8.5350 -0.2256 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5566 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8720 -3.6043 0.8894 32 1 2.8719 -3.6043 -0.8906 33 1 0.5429 -4.9308 -0.0011 34 1 -0.3312 -6.2857 0.1233 35 1 -0.3205 -7.6152 -1.0621 36 1 -0.1364 -7.8765 1.9748 37 1 -1.5099 -8.3552 0.9477 38 1 1.6255 -7.9858 2.3988 39 1 1.8192 -9.6459 3.0111 40 1 3.9000 -8.1468 1.5580 41 1 3.8577 -8.3822 3.2037 42 1 2.0523 -8.9695 -1.2072 43 1 3.3103 -8.3600 -0.1033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599918939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:55 Heat of formation + Delta-G solvation = -186.025966 kcal Electronic energy + Delta-G solvation = -28977.341257 eV Core-core repulsion = 24449.190232 eV Total energy + Delta-G solvation = -4528.151025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.46687 -47.93843 -47.88780 -40.67032 -38.33416 -35.08530 -34.70148 -33.40027 -32.82528 -30.86372 -29.58723 -27.49880 -25.72256 -24.48688 -23.83873 -22.82254 -21.25851 -20.50843 -19.29445 -18.67863 -18.58911 -18.45937 -17.25495 -16.48501 -16.27003 -15.94997 -15.78001 -15.33817 -14.86088 -14.62574 -14.55339 -14.43792 -14.21660 -14.17170 -14.05409 -13.89323 -13.74246 -13.62314 -13.45252 -13.12052 -13.05287 -12.71496 -12.32841 -12.08285 -11.67156 -11.28264 -11.16326 -11.07115 -11.06631 -10.99603 -10.66529 -10.38167 -9.99972 -9.60867 -9.31436 -8.94365 -8.69936 -8.51381 -8.30297 -6.13189 -4.16017 2.40588 2.72311 3.27052 3.33140 3.33458 3.37652 3.48257 3.57014 3.66362 4.06060 4.24523 4.30061 4.40999 4.48272 4.58293 4.69880 4.84004 4.93242 5.10750 5.16341 5.18197 5.24176 5.37748 5.42393 5.59166 5.64090 5.73087 5.82576 6.16699 6.32550 6.41971 6.70144 6.88757 7.02070 7.05563 7.37257 7.49444 7.56962 7.85420 8.15931 8.27600 8.81645 8.90574 9.49114 10.98432 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.023413 B = 0.002703 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.625822 B =10356.779333 C =10890.419718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.737 5.737 12 C 0.703 3.297 13 O -0.593 6.593 14 N -0.636 5.636 15 C 0.116 3.884 16 C -0.139 4.139 17 C -0.126 4.126 18 H 0.119 0.881 19 C 0.455 3.545 20 F -0.178 7.178 21 F -0.184 7.184 22 F -0.181 7.181 23 C -0.101 4.101 24 H 0.102 0.898 25 C 0.053 3.947 26 N -0.851 5.851 27 C 0.135 3.865 28 H 0.262 0.738 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.392 0.608 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.036 0.964 39 H 0.081 0.919 40 H 0.351 0.649 41 H 0.341 0.659 42 H 0.069 0.931 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.279 -22.932 1.600 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.016 3.984 11 N -0.393 5.393 12 C 0.404 3.596 13 O -0.472 6.472 14 N -0.375 5.375 15 C -0.008 4.008 16 C -0.177 4.177 17 C -0.146 4.146 18 H 0.137 0.863 19 C 0.400 3.600 20 F -0.159 7.159 21 F -0.166 7.166 22 F -0.163 7.163 23 C -0.121 4.121 24 H 0.120 0.880 25 C -0.077 4.077 26 N -0.383 5.383 27 C 0.011 3.989 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.228 0.772 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.054 0.946 39 H 0.099 0.901 40 H 0.167 0.833 41 H 0.153 0.847 42 H 0.087 0.913 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.480 -23.551 1.559 23.732 hybrid contribution -0.622 1.702 0.336 1.843 sum -3.102 -21.849 1.895 22.149 Atomic orbital electron populations 1.69951 1.06096 1.26904 1.50361 1.24990 0.94896 0.99422 0.94947 0.86510 0.79856 0.82962 0.78221 1.20542 1.21166 1.19701 1.21035 0.93264 0.90317 1.51387 0.92216 1.19317 0.94232 0.91116 0.97738 1.21617 0.95674 0.80379 1.00685 1.45735 1.09925 1.05371 1.78228 1.15967 0.85380 0.80367 0.77862 1.90871 1.11874 1.86108 1.58336 1.47300 1.05717 1.05640 1.78883 1.21529 0.80538 1.00227 0.98484 1.22105 1.01120 0.92813 1.01706 1.22509 0.98433 0.95405 0.98249 0.86269 1.20614 0.75231 0.81242 0.82868 1.93131 1.94224 1.85321 1.43265 1.93186 1.33397 1.94854 1.95125 1.93186 1.78360 1.48662 1.96074 1.21638 0.91557 1.01600 0.97289 0.87964 1.22127 0.89511 1.00079 0.96027 1.58901 1.12045 1.58121 1.09268 1.21414 0.98786 0.81875 0.96821 0.92830 0.96011 0.96057 0.92711 0.92747 0.77227 0.89206 0.90738 0.89507 0.89170 0.94622 0.90114 0.83336 0.84678 0.91259 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 13.29 55.43 0.74 -24.96 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -14.20 9.11 -34.44 -0.31 -14.52 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 2.87 5.62 -4.04 -0.02 2.85 16 11 N -0.74 -12.30 5.46 -65.23 -0.36 -12.66 16 12 C 0.70 11.26 8.29 -86.92 -0.72 10.54 16 13 O -0.59 -11.42 15.16 5.29 0.08 -11.34 16 14 N -0.64 -7.29 2.46 -178.50 -0.44 -7.72 16 15 C 0.12 0.98 6.38 -3.71 -0.02 0.96 16 16 C -0.14 -1.03 4.76 -26.59 -0.13 -1.15 16 17 C -0.13 -0.90 2.01 -90.56 -0.18 -1.09 16 18 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 19 C 0.45 3.85 2.59 37.16 0.10 3.95 16 20 F -0.18 -1.72 13.47 2.25 0.03 -1.69 16 21 F -0.18 -1.63 17.06 2.25 0.04 -1.59 16 22 F -0.18 -1.68 16.50 2.25 0.04 -1.64 16 23 C -0.10 -0.87 2.28 -90.49 -0.21 -1.08 16 24 H 0.10 0.85 7.60 -51.93 -0.39 0.46 16 25 C 0.05 0.56 5.08 -3.83 -0.02 0.54 16 26 N -0.85 -9.66 9.58 -10.37 -0.10 -9.76 16 27 C 0.13 1.34 5.59 -3.71 -0.02 1.32 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.39 5.68 5.97 -40.82 -0.24 5.43 16 34 H 0.09 0.78 5.65 -51.93 -0.29 0.49 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.76 5.83 -51.93 -0.30 0.46 16 37 H 0.09 0.54 7.97 -51.93 -0.41 0.12 16 38 H 0.04 0.42 5.91 -51.93 -0.31 0.11 16 39 H 0.08 0.85 5.73 -51.93 -0.30 0.55 16 40 H 0.35 4.52 6.21 -39.29 -0.24 4.28 16 41 H 0.34 3.65 9.08 -39.29 -0.36 3.29 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.11 1.27 5.14 -51.93 -0.27 1.01 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -30.74 344.22 -7.21 -37.95 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -5.62 Total: 8.10 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -1.78 Total: 4.04 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.16 Total: -55.10 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.11 Total: -4.92 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.74 -7.21 -37.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599918939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.078 kcal (2) G-P(sol) polarization free energy of solvation -30.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds