Wall clock time and date at job start Tue Mar 31 2020 14:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99894 * 2 1 4 4 H 1.48501 * 109.47435 * 270.00001 * 3 2 1 5 5 H 1.48497 * 109.47217 * 30.00560 * 3 2 1 6 6 H 1.48505 * 109.46852 * 150.00189 * 3 2 1 7 7 C 1.37871 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00308 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00083 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47471 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47344 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00064 * 180.02562 * 11 10 9 13 13 O 1.21588 * 119.99873 * 4.94970 * 12 11 10 14 14 N 1.34780 * 120.00135 * 184.95371 * 12 11 10 15 15 C 1.46927 * 120.62574 * 354.40740 * 14 12 11 16 16 C 1.53194 * 108.88971 * 233.55812 * 15 14 12 17 17 C 1.53073 * 109.29591 * 305.57879 * 16 15 14 18 18 H 1.09002 * 109.34811 * 301.13303 * 17 16 15 19 19 C 1.52996 * 109.45503 * 181.24074 * 17 16 15 20 20 F 1.39900 * 109.47389 * 306.96648 * 19 17 16 21 21 F 1.39905 * 109.46828 * 66.96856 * 19 17 16 22 22 F 1.39902 * 109.47553 * 186.96597 * 19 17 16 23 23 C 1.53049 * 109.65889 * 61.15288 * 17 16 15 24 24 H 1.08999 * 109.49621 * 178.74926 * 23 17 16 25 25 C 1.53000 * 109.49665 * 58.65184 * 23 17 16 26 26 N 1.46896 * 109.47098 * 182.99749 * 25 23 17 27 27 C 1.46921 * 120.62992 * 174.42716 * 14 12 11 28 28 H 0.97002 * 119.99819 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46993 * 59.99898 * 9 7 2 30 30 H 1.09003 * 109.47414 * 300.00254 * 9 7 2 31 31 H 1.08997 * 109.47288 * 59.99843 * 10 9 7 32 32 H 1.09001 * 109.46710 * 299.99609 * 10 9 7 33 33 H 0.96996 * 119.99889 * 359.97438 * 11 10 9 34 34 H 1.09001 * 109.59019 * 353.41091 * 15 14 12 35 35 H 1.08996 * 109.59009 * 113.70422 * 15 14 12 36 36 H 1.09002 * 109.49987 * 65.38961 * 16 15 14 37 37 H 1.08998 * 109.49701 * 185.48857 * 16 15 14 38 38 H 1.09001 * 109.47024 * 302.99726 * 25 23 17 39 39 H 1.09002 * 109.47183 * 62.99565 * 25 23 17 40 40 H 1.00900 * 110.99676 * 56.04757 * 26 25 23 41 41 H 1.00906 * 110.99850 * 179.97438 * 26 25 23 42 42 H 1.09003 * 109.58571 * 246.15247 * 27 14 12 43 43 H 1.08994 * 109.59046 * 6.43819 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0979 -0.0007 13 8 3.3991 -6.0999 0.0910 14 7 1.5167 -7.2630 -0.1021 15 6 0.0476 -7.2851 -0.0907 16 6 -0.4254 -8.2568 0.9950 17 6 0.2250 -9.6239 0.7685 18 1 -0.0464 -9.9935 -0.2204 19 6 -0.2690 -10.6058 1.8327 20 9 -0.0670 -10.0568 3.1035 21 9 -1.6330 -10.8523 1.6426 22 9 0.4412 -11.8064 1.7252 23 6 1.7468 -9.4921 0.8635 24 1 2.2061 -10.4707 0.7239 25 6 2.1267 -8.9405 2.2391 26 7 3.5814 -8.7467 2.3042 27 6 2.2414 -8.5350 -0.2256 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5566 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8720 -3.6043 0.8894 32 1 2.8719 -3.6043 -0.8906 33 1 0.5429 -4.9308 -0.0011 34 1 -0.3312 -6.2857 0.1233 35 1 -0.3205 -7.6152 -1.0621 36 1 -0.1364 -7.8765 1.9748 37 1 -1.5099 -8.3552 0.9477 38 1 1.6255 -7.9858 2.3988 39 1 1.8192 -9.6459 3.0111 40 1 3.9000 -8.1468 1.5580 41 1 3.8577 -8.3822 3.2037 42 1 2.0523 -8.9695 -1.2072 43 1 3.3103 -8.3600 -0.1033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599918939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:54 Heat of formation + Delta-G solvation = -207.059104 kcal Electronic energy + Delta-G solvation = -28978.253322 eV Core-core repulsion = 24449.190232 eV Total energy + Delta-G solvation = -4529.063090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.15141 -48.63587 -48.57163 -41.68938 -39.39300 -36.61971 -35.75899 -34.72016 -34.21936 -31.84607 -31.16124 -28.39144 -26.96068 -25.95300 -24.63593 -23.58001 -22.96262 -21.66594 -20.17550 -19.55902 -19.37003 -19.24011 -18.50841 -18.00449 -17.19957 -17.01043 -16.82096 -16.48483 -16.41130 -15.63103 -15.46781 -15.35356 -15.20828 -15.12278 -14.95704 -14.87290 -14.71960 -14.40276 -14.29404 -14.24057 -14.18472 -13.84531 -13.65537 -13.22396 -12.93898 -12.80493 -12.52909 -12.33746 -12.24491 -11.91575 -11.85094 -11.74503 -11.64933 -11.44373 -11.10429 -10.60151 -10.16690 -9.68437 -9.46720 -8.24088 -6.34033 1.42168 1.42425 1.53426 1.63287 1.76626 2.13861 2.40673 2.77661 2.89644 2.98187 3.03556 3.11042 3.51824 3.59515 3.77563 3.83050 3.97596 4.09954 4.24816 4.35216 4.41380 4.50566 4.53529 4.59279 4.68000 4.75079 4.76868 4.86822 4.91179 4.95901 5.12478 5.31110 5.48746 5.54200 5.59476 5.78658 5.91362 6.14798 6.17420 6.41199 6.79101 6.97813 7.35396 7.56287 8.87704 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.023413 B = 0.002703 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.625822 B =10356.779333 C =10890.419718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.162 3.838 11 N -0.735 5.735 12 C 0.700 3.300 13 O -0.629 6.629 14 N -0.625 5.625 15 C 0.110 3.890 16 C -0.134 4.134 17 C -0.118 4.118 18 H 0.150 0.850 19 C 0.455 3.545 20 F -0.188 7.188 21 F -0.185 7.185 22 F -0.186 7.186 23 C -0.093 4.093 24 H 0.111 0.889 25 C 0.054 3.946 26 N -0.854 5.854 27 C 0.133 3.867 28 H 0.266 0.734 29 H 0.009 0.991 30 H 0.006 0.994 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.403 0.597 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.021 0.979 39 H 0.080 0.920 40 H 0.343 0.657 41 H 0.342 0.658 42 H 0.098 0.902 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.948 -23.883 0.825 24.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.037 3.963 11 N -0.392 5.392 12 C 0.401 3.599 13 O -0.511 6.511 14 N -0.363 5.363 15 C -0.012 4.012 16 C -0.172 4.172 17 C -0.138 4.138 18 H 0.168 0.832 19 C 0.401 3.599 20 F -0.169 7.169 21 F -0.166 7.166 22 F -0.167 7.167 23 C -0.113 4.113 24 H 0.129 0.871 25 C -0.077 4.077 26 N -0.384 5.384 27 C 0.010 3.990 28 H 0.074 0.926 29 H 0.028 0.972 30 H 0.025 0.975 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.241 0.759 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.130 0.870 38 H 0.039 0.961 39 H 0.099 0.901 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.116 0.884 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.191 -24.559 0.787 24.778 hybrid contribution -0.447 1.909 0.610 2.053 sum -3.638 -22.650 1.397 22.983 Atomic orbital electron populations 1.70049 1.07471 1.27962 1.51028 1.25835 0.95778 1.02976 0.94442 0.85476 0.78645 0.78596 0.78528 1.19741 1.20587 1.19142 1.21457 0.93580 0.91927 1.51475 0.92360 1.19110 0.94215 0.91677 0.96251 1.21044 0.94553 0.81178 0.99501 1.45417 1.10344 1.04556 1.78853 1.16066 0.85000 0.81145 0.77662 1.90847 1.13604 1.86787 1.59850 1.47292 1.07114 1.04576 1.77291 1.21807 0.78309 1.00625 1.00463 1.22066 1.02402 0.92430 1.00349 1.22528 0.96938 0.95010 0.99294 0.83227 1.20772 0.75172 0.81256 0.82732 1.93117 1.94265 1.85441 1.44115 1.93187 1.33455 1.94872 1.95085 1.93180 1.78458 1.49020 1.96062 1.21564 0.92843 1.01349 0.95509 0.87071 1.22154 0.88717 0.99420 0.97407 1.58951 1.12746 1.57722 1.09027 1.21563 0.97563 0.81211 0.98688 0.92557 0.97238 0.97524 0.94094 0.93740 0.75880 0.89617 0.87766 0.91181 0.86996 0.96096 0.90138 0.84285 0.84617 0.88406 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.41 13.29 21.44 0.28 -53.12 16 2 C 0.01 0.47 5.46 84.65 0.46 0.94 16 3 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -30.07 9.11 25.60 0.23 -29.84 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.03 1.23 5.09 29.85 0.15 1.38 16 10 C 0.16 6.81 5.62 86.38 0.49 7.29 16 11 N -0.74 -24.53 5.46 -478.54 -2.61 -27.15 16 12 C 0.70 22.25 8.29 179.05 1.48 23.73 16 13 O -0.63 -24.58 15.16 -3.99 -0.06 -24.64 16 14 N -0.63 -13.37 2.46 -836.92 -2.06 -15.43 16 15 C 0.11 1.58 6.38 86.36 0.55 2.13 16 16 C -0.13 -1.64 4.76 30.68 0.15 -1.49 16 17 C -0.12 -1.34 2.01 -10.75 -0.02 -1.36 16 18 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 19 C 0.45 6.68 2.59 71.98 0.19 6.86 16 20 F -0.19 -3.39 13.47 44.97 0.61 -2.79 16 21 F -0.18 -2.79 17.06 44.97 0.77 -2.03 16 22 F -0.19 -3.04 16.50 44.97 0.74 -2.29 16 23 C -0.09 -1.42 2.28 -10.71 -0.02 -1.44 16 24 H 0.11 1.58 7.60 -2.39 -0.02 1.56 16 25 C 0.05 1.09 5.08 86.30 0.44 1.52 16 26 N -0.85 -19.43 9.58 -186.72 -1.79 -21.22 16 27 C 0.13 2.39 5.59 86.36 0.48 2.87 16 28 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.40 11.51 5.97 -92.71 -0.55 10.96 16 34 H 0.09 1.33 5.65 -2.39 -0.01 1.32 16 35 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.13 5.83 -2.39 -0.01 1.12 16 37 H 0.11 0.95 7.97 -2.39 -0.02 0.93 16 38 H 0.02 0.49 5.91 -2.39 -0.01 0.47 16 39 H 0.08 1.64 5.73 -2.39 -0.01 1.62 16 40 H 0.34 8.99 6.21 -89.69 -0.56 8.43 16 41 H 0.34 7.47 9.08 -89.69 -0.81 6.66 16 42 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 1.98 5.14 -2.39 -0.01 1.96 16 Total: -1.00 -66.72 344.22 1.64 -65.08 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.84 Total: 25.85 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 4.58 Total: 12.60 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -6.18 Total: -116.92 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.06 Total: -24.64 kcal Atomic # 9 Polarization: -9.22 SS G_CDS: 2.11 Total: -7.11 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -66.72 1.64 -65.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599918939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.977 kcal (2) G-P(sol) polarization free energy of solvation -66.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds