Wall clock time and date at job start Tue Mar 31 2020 14:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99991 * 2 1 4 4 C 1.53002 * 109.46767 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47088 * 65.00309 * 4 3 2 6 6 C 1.46506 * 119.99537 * 269.99330 * 5 4 3 7 7 C 1.50699 * 109.47106 * 270.00004 * 6 5 4 8 8 H 1.07999 * 120.00463 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99855 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99839 * 359.97438 * 9 7 6 11 11 Si 1.86790 * 120.00004 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47300 * 59.99768 * 11 9 7 13 13 H 1.48496 * 109.47216 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47256 * 299.99895 * 11 9 7 15 15 C 1.34777 * 120.00199 * 89.99979 * 5 4 3 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 5 4 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 5 4 18 18 C 1.50700 * 109.46869 * 179.72354 * 17 15 5 19 19 C 1.38250 * 119.92447 * 269.71970 * 18 17 15 20 20 C 1.38244 * 120.14516 * 179.72663 * 19 18 17 21 21 C 1.38566 * 119.99897 * 0.55115 * 20 19 18 22 22 O 1.35994 * 120.07374 * 179.70229 * 21 20 19 23 23 C 1.42901 * 116.99958 * 0.02617 * 22 21 20 24 24 C 1.39146 * 119.85199 * 359.72780 * 21 20 19 25 25 O 1.35995 * 120.07166 * 180.02562 * 24 21 20 26 26 C 1.38236 * 119.92780 * 90.00165 * 18 17 15 27 27 H 1.08998 * 109.46739 * 300.00029 * 1 2 3 28 28 H 1.08997 * 109.47178 * 59.99650 * 1 2 3 29 29 H 1.08997 * 109.47163 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46877 * 60.00239 * 3 2 1 31 31 H 1.09001 * 109.46927 * 300.00079 * 3 2 1 32 32 H 1.09001 * 109.46980 * 304.99872 * 4 3 2 33 33 H 1.09005 * 109.46685 * 184.99965 * 4 3 2 34 34 H 1.08994 * 109.46996 * 30.00327 * 6 5 4 35 35 H 1.09001 * 109.46578 * 150.00190 * 6 5 4 36 36 H 0.96999 * 119.99754 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.46965 * 299.72211 * 17 15 5 38 38 H 1.08994 * 109.46990 * 59.72065 * 17 15 5 39 39 H 1.08007 * 119.92728 * 359.97438 * 19 18 17 40 40 H 1.08002 * 119.99813 * 180.25691 * 20 19 18 41 41 H 1.09001 * 109.47296 * 59.99828 * 23 22 21 42 42 H 1.09000 * 109.47242 * 179.97438 * 23 22 21 43 43 H 1.09002 * 109.46874 * 300.00153 * 23 22 21 44 44 H 0.96696 * 113.99913 * 269.97693 * 25 24 21 45 45 H 1.08000 * 120.00024 * 359.97397 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1052 -0.8921 -1.3427 7 6 5.5010 -1.2978 -0.9449 8 1 6.2196 -0.5460 -0.6538 9 6 5.8606 -2.6289 -0.9527 10 7 4.9854 -3.5444 -1.3067 11 14 7.5905 -3.1318 -0.4590 12 1 7.8530 -2.6974 0.9366 13 1 7.7218 -4.6081 -0.5503 14 1 8.5717 -2.4898 -1.3701 15 6 4.2615 1.3338 -2.3218 16 8 4.1539 2.5395 -2.2474 17 6 4.7084 0.6953 -3.6117 18 6 4.9555 1.7661 -4.6429 19 6 3.9288 2.1726 -5.4748 20 6 4.1490 3.1585 -6.4185 21 6 5.4039 3.7335 -6.5400 22 8 5.6237 4.6992 -7.4719 23 6 4.5152 5.0733 -8.2925 24 6 6.4387 3.3202 -5.7066 25 8 7.6719 3.8819 -5.8216 26 6 6.2098 2.3356 -4.7589 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8514 0.5682 0.8410 33 1 3.9786 2.1765 0.0889 34 1 3.3853 -1.3629 -0.6734 35 1 3.9120 -1.2114 -2.3668 36 1 5.2383 -4.4809 -1.3118 37 1 5.6283 0.1362 -3.4408 38 1 3.9329 0.0182 -3.9696 39 1 2.9515 1.7218 -5.3844 40 1 3.3442 3.4772 -7.0644 41 1 3.7089 5.4511 -7.6637 42 1 4.8258 5.8507 -8.9905 43 1 4.1651 4.2037 -8.8487 44 1 8.2555 3.4255 -6.4430 45 1 7.0112 2.0133 -4.1106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601035913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:05 Heat of formation + Delta-G solvation = -135.434859 kcal Electronic energy + Delta-G solvation = -27699.040594 eV Core-core repulsion = 23682.647353 eV Total energy + Delta-G solvation = -4016.393241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.36286 -39.19141 -37.79587 -37.36740 -36.45576 -34.81978 -32.62577 -31.82431 -30.01985 -29.74695 -27.96825 -27.01574 -26.40415 -25.60613 -22.86222 -22.64420 -22.48565 -21.13877 -18.64151 -18.09955 -17.42716 -16.69318 -16.54851 -16.33626 -15.97292 -15.79912 -15.59397 -15.13410 -14.81685 -14.59043 -14.42836 -14.32788 -13.94456 -13.82847 -13.66038 -12.94064 -12.41820 -12.27339 -12.13421 -11.97479 -11.91514 -11.81059 -11.49257 -11.40769 -11.23937 -11.02344 -10.95949 -10.87648 -10.83774 -10.54295 -10.40693 -10.11444 -9.71135 -9.38867 -9.03880 -8.67058 -8.49344 -7.87214 -7.66561 -6.12675 -4.19986 1.38498 1.50085 3.22499 3.26873 3.32019 3.33734 3.44445 3.68756 4.04062 4.17636 4.30674 4.39501 4.82651 4.97749 5.02016 5.08825 5.20103 5.26002 5.34835 5.39595 5.43353 5.52940 5.55186 5.65734 5.67872 5.72415 5.74662 5.78509 5.85774 6.11081 6.13130 6.23481 6.34954 6.38171 6.39781 6.77880 6.85884 6.89413 7.24640 7.34094 7.49094 7.62414 7.83845 7.84487 8.13375 8.41023 8.84309 9.06309 9.47286 10.93761 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010339 B = 0.003878 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.459614 B = 7218.191421 C = 9115.718373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.048 3.952 4 C 0.122 3.878 5 N -0.588 5.588 6 C 0.239 3.761 7 C -0.540 4.540 8 H 0.059 0.941 9 C 0.066 3.934 10 N -0.889 5.889 11 Si 0.894 3.106 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.518 3.482 16 O -0.573 6.573 17 C -0.097 4.097 18 C -0.067 4.067 19 C -0.076 4.076 20 C -0.194 4.194 21 C 0.091 3.909 22 O -0.312 6.312 23 C 0.027 3.973 24 C 0.073 3.927 25 O -0.487 6.487 26 C -0.090 4.090 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.035 0.965 36 H 0.265 0.735 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.054 0.946 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.382 0.618 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.765 10.006 -9.135 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.029 4.029 4 C -0.002 4.002 5 N -0.318 5.318 6 C 0.120 3.880 7 C -0.579 4.579 8 H 0.077 0.923 9 C -0.137 4.137 10 N -0.528 5.528 11 Si 0.722 3.278 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.306 3.694 16 O -0.454 6.454 17 C -0.136 4.136 18 C -0.068 4.068 19 C -0.094 4.094 20 C -0.213 4.213 21 C 0.046 3.954 22 O -0.226 6.226 23 C -0.068 4.068 24 C 0.028 3.972 25 O -0.296 6.296 26 C -0.109 4.109 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.132 0.868 38 H 0.118 0.882 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.072 0.928 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.236 0.764 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.783 10.733 -8.732 14.640 hybrid contribution 0.557 -0.642 -0.055 0.851 sum -4.227 10.092 -8.787 14.033 Atomic orbital electron populations 1.22675 0.82248 1.02357 0.99124 1.88062 1.18587 1.27478 1.95194 1.23026 0.95394 0.84852 0.99674 1.21312 0.90952 0.99573 0.88344 1.48165 1.63677 1.09972 1.10000 1.19476 0.97224 0.72731 0.98594 1.21507 0.97394 0.92397 1.46586 0.92281 1.24921 0.97428 0.96363 0.94986 1.69926 1.34342 1.01187 1.47310 0.86615 0.84533 0.77368 0.79285 1.20199 1.21205 1.20126 1.20335 0.77030 0.86640 0.85409 1.90614 1.55437 1.14669 1.84669 1.20628 1.05199 0.96372 0.91397 1.19328 0.92912 0.97978 0.96609 1.20818 0.98627 0.95792 0.94165 1.21028 0.95737 1.01237 1.03264 1.19369 0.94301 0.91109 0.90638 1.86115 1.37318 1.52882 1.46249 1.23029 0.89467 1.00406 0.93946 1.17646 0.84739 0.97262 0.97533 1.84904 1.22257 1.55744 1.66665 1.21149 0.98068 0.94332 0.97347 0.94765 0.94705 0.89878 0.93324 0.93444 0.89552 0.89552 0.93242 0.94753 0.92564 0.86776 0.88216 0.85713 0.85385 0.92759 0.88507 0.92818 0.76381 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.68 9.53 -35.23 -0.34 -7.01 16 3 C 0.05 0.80 6.28 37.16 0.23 1.03 16 4 C 0.12 2.28 5.81 -4.04 -0.02 2.25 16 5 N -0.59 -12.37 2.42 -175.05 -0.42 -12.79 16 6 C 0.24 5.67 4.79 -5.19 -0.02 5.65 16 7 C -0.54 -13.93 9.30 -34.44 -0.32 -14.25 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -24.44 13.29 55.43 0.74 -23.71 16 11 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 C 0.52 10.69 7.67 -10.98 -0.08 10.60 16 16 O -0.57 -12.84 15.61 5.55 0.09 -12.75 16 17 C -0.10 -1.74 4.38 -29.03 -0.13 -1.87 16 18 C -0.07 -1.13 4.37 -104.62 -0.46 -1.59 16 19 C -0.08 -1.13 9.69 -39.57 -0.38 -1.52 16 20 C -0.19 -2.64 9.04 -39.46 -0.36 -3.00 16 21 C 0.09 1.35 6.70 -39.12 -0.26 1.09 16 22 O -0.31 -4.20 10.28 -34.23 -0.35 -4.55 16 23 C 0.03 0.24 9.81 101.05 0.99 1.23 16 24 C 0.07 1.15 6.72 -39.12 -0.26 0.89 16 25 O -0.49 -7.03 13.29 -34.23 -0.45 -7.48 16 26 C -0.09 -1.49 9.63 -39.46 -0.38 -1.87 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.09 1.63 8.07 -51.93 -0.42 1.21 16 33 H 0.09 1.56 7.42 -51.93 -0.39 1.18 16 34 H 0.05 1.28 7.11 -51.93 -0.37 0.91 16 35 H 0.03 0.83 6.43 -51.93 -0.33 0.50 16 36 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.11 2.15 7.97 -51.93 -0.41 1.73 16 38 H 0.10 1.69 7.34 -51.93 -0.38 1.31 16 39 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 40 H 0.13 1.37 6.30 -52.49 -0.33 1.04 16 41 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 44 H 0.38 3.58 9.06 45.56 0.41 3.99 16 45 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 382.06 15.07 5.76 5.76 Total: -1.00 -32.69 382.06 -6.39 -39.08 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.94 Total: 6.17 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -0.44 Total: 1.84 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.31 Total: -36.50 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -1.06 Total: -31.80 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.69 -6.39 -39.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601035913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.354 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds