Wall clock time and date at job start Tue Mar 31 2020 14:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99991 * 2 1 4 4 C 1.53002 * 109.46767 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47088 * 65.00309 * 4 3 2 6 6 C 1.46506 * 119.99537 * 269.99330 * 5 4 3 7 7 C 1.50699 * 109.47106 * 270.00004 * 6 5 4 8 8 H 1.07999 * 120.00463 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99855 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99839 * 359.97438 * 9 7 6 11 11 Si 1.86790 * 120.00004 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47300 * 59.99768 * 11 9 7 13 13 H 1.48496 * 109.47216 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47256 * 299.99895 * 11 9 7 15 15 C 1.34777 * 120.00199 * 89.99979 * 5 4 3 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 5 4 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 5 4 18 18 C 1.50700 * 109.46869 * 179.72354 * 17 15 5 19 19 C 1.38250 * 119.92447 * 269.71970 * 18 17 15 20 20 C 1.38244 * 120.14516 * 179.72663 * 19 18 17 21 21 C 1.38566 * 119.99897 * 0.55115 * 20 19 18 22 22 O 1.35994 * 120.07374 * 179.70229 * 21 20 19 23 23 C 1.42901 * 116.99958 * 0.02617 * 22 21 20 24 24 C 1.39146 * 119.85199 * 359.72780 * 21 20 19 25 25 O 1.35995 * 120.07166 * 180.02562 * 24 21 20 26 26 C 1.38236 * 119.92780 * 90.00165 * 18 17 15 27 27 H 1.08998 * 109.46739 * 300.00029 * 1 2 3 28 28 H 1.08997 * 109.47178 * 59.99650 * 1 2 3 29 29 H 1.08997 * 109.47163 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46877 * 60.00239 * 3 2 1 31 31 H 1.09001 * 109.46927 * 300.00079 * 3 2 1 32 32 H 1.09001 * 109.46980 * 304.99872 * 4 3 2 33 33 H 1.09005 * 109.46685 * 184.99965 * 4 3 2 34 34 H 1.08994 * 109.46996 * 30.00327 * 6 5 4 35 35 H 1.09001 * 109.46578 * 150.00190 * 6 5 4 36 36 H 0.96999 * 119.99754 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.46965 * 299.72211 * 17 15 5 38 38 H 1.08994 * 109.46990 * 59.72065 * 17 15 5 39 39 H 1.08007 * 119.92728 * 359.97438 * 19 18 17 40 40 H 1.08002 * 119.99813 * 180.25691 * 20 19 18 41 41 H 1.09001 * 109.47296 * 59.99828 * 23 22 21 42 42 H 1.09000 * 109.47242 * 179.97438 * 23 22 21 43 43 H 1.09002 * 109.46874 * 300.00153 * 23 22 21 44 44 H 0.96696 * 113.99913 * 269.97693 * 25 24 21 45 45 H 1.08000 * 120.00024 * 359.97397 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1052 -0.8921 -1.3427 7 6 5.5010 -1.2978 -0.9449 8 1 6.2196 -0.5460 -0.6538 9 6 5.8606 -2.6289 -0.9527 10 7 4.9854 -3.5444 -1.3067 11 14 7.5905 -3.1318 -0.4590 12 1 7.8530 -2.6974 0.9366 13 1 7.7218 -4.6081 -0.5503 14 1 8.5717 -2.4898 -1.3701 15 6 4.2615 1.3338 -2.3218 16 8 4.1539 2.5395 -2.2474 17 6 4.7084 0.6953 -3.6117 18 6 4.9555 1.7661 -4.6429 19 6 3.9288 2.1726 -5.4748 20 6 4.1490 3.1585 -6.4185 21 6 5.4039 3.7335 -6.5400 22 8 5.6237 4.6992 -7.4719 23 6 4.5152 5.0733 -8.2925 24 6 6.4387 3.3202 -5.7066 25 8 7.6719 3.8819 -5.8216 26 6 6.2098 2.3356 -4.7589 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8514 0.5682 0.8410 33 1 3.9786 2.1765 0.0889 34 1 3.3853 -1.3629 -0.6734 35 1 3.9120 -1.2114 -2.3668 36 1 5.2383 -4.4809 -1.3118 37 1 5.6283 0.1362 -3.4408 38 1 3.9329 0.0182 -3.9696 39 1 2.9515 1.7218 -5.3844 40 1 3.3442 3.4772 -7.0644 41 1 3.7089 5.4511 -7.6637 42 1 4.8258 5.8507 -8.9905 43 1 4.1651 4.2037 -8.8487 44 1 8.2555 3.4255 -6.4430 45 1 7.0112 2.0133 -4.1106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601035913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:04 Heat of formation + Delta-G solvation = -157.225267 kcal Electronic energy + Delta-G solvation = -27699.985497 eV Core-core repulsion = 23682.647353 eV Total energy + Delta-G solvation = -4017.338144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.51435 -40.71162 -38.91038 -38.61426 -37.63757 -36.54925 -34.55100 -33.15606 -31.34390 -30.98503 -29.11045 -28.68860 -27.49117 -26.84350 -24.78850 -23.99778 -23.61494 -22.35765 -20.06040 -19.34869 -18.60112 -18.51607 -18.03441 -17.58143 -17.42488 -17.02073 -16.78787 -16.53496 -16.17320 -16.08063 -15.78777 -15.55199 -15.22278 -14.91388 -14.83248 -14.47628 -14.19771 -13.58438 -13.44174 -13.30921 -13.25526 -13.03023 -12.96262 -12.74341 -12.73806 -12.55211 -12.52077 -12.13581 -12.12011 -11.94475 -11.86185 -11.66633 -11.53641 -10.79765 -10.60288 -10.45181 -9.82378 -9.41218 -9.01661 -8.14872 -6.29347 0.24325 0.32556 1.44882 1.45434 1.53048 1.79355 2.26295 2.34593 2.46092 2.71138 2.94973 3.15154 3.22184 3.79792 3.82547 3.94012 4.09947 4.15631 4.27519 4.32954 4.39311 4.40930 4.42369 4.46572 4.54036 4.56774 4.60781 4.66476 4.73754 4.81113 4.85502 4.91400 4.96058 5.06840 5.16297 5.22401 5.36821 5.60124 5.68360 5.71914 5.90372 6.12970 6.29549 6.30445 6.63638 6.86923 6.87615 7.34232 7.45760 8.90331 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010339 B = 0.003878 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.459614 B = 7218.191421 C = 9115.718373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.057 3.943 4 C 0.115 3.885 5 N -0.592 5.592 6 C 0.260 3.740 7 C -0.549 4.549 8 H 0.051 0.949 9 C 0.024 3.976 10 N -0.918 5.918 11 Si 0.953 3.047 12 H -0.275 1.275 13 H -0.282 1.282 14 H -0.270 1.270 15 C 0.515 3.485 16 O -0.590 6.590 17 C -0.088 4.088 18 C -0.086 4.086 19 C -0.081 4.081 20 C -0.186 4.186 21 C 0.089 3.911 22 O -0.327 6.327 23 C 0.015 3.985 24 C 0.062 3.938 25 O -0.499 6.499 26 C -0.107 4.107 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.267 0.733 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.140 0.860 40 H 0.161 0.839 41 H 0.061 0.939 42 H 0.120 0.880 43 H 0.069 0.931 44 H 0.402 0.598 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.304 10.939 -10.076 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C -0.020 4.020 4 C -0.008 4.008 5 N -0.322 5.322 6 C 0.139 3.861 7 C -0.588 4.588 8 H 0.070 0.930 9 C -0.177 4.177 10 N -0.557 5.557 11 Si 0.779 3.221 12 H -0.200 1.200 13 H -0.207 1.207 14 H -0.195 1.195 15 C 0.305 3.695 16 O -0.472 6.472 17 C -0.127 4.127 18 C -0.087 4.087 19 C -0.099 4.099 20 C -0.205 4.205 21 C 0.043 3.957 22 O -0.241 6.241 23 C -0.079 4.079 24 C 0.017 3.983 25 O -0.310 6.310 26 C -0.125 4.125 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.158 0.842 40 H 0.179 0.821 41 H 0.079 0.921 42 H 0.138 0.862 43 H 0.088 0.912 44 H 0.259 0.741 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.324 11.679 -9.682 16.078 hybrid contribution 0.688 -0.847 0.181 1.106 sum -4.636 10.832 -9.502 15.137 Atomic orbital electron populations 1.22874 0.79998 1.03362 1.00614 1.88010 1.21160 1.28191 1.95474 1.22907 0.93539 0.84762 1.00806 1.21467 0.92965 0.99247 0.87099 1.48159 1.63927 1.09003 1.11112 1.19033 0.95602 0.74130 0.97286 1.21702 0.98121 0.92485 1.46456 0.93043 1.25609 1.00823 0.96351 0.94905 1.70017 1.36017 1.01476 1.48169 0.85686 0.80414 0.77131 0.78916 1.20006 1.20692 1.19526 1.20726 0.76448 0.86426 0.85949 1.90589 1.56268 1.15339 1.85054 1.20525 1.04568 0.96843 0.90796 1.19282 0.93793 0.98437 0.97204 1.21041 0.98776 0.96105 0.93996 1.21335 0.96201 1.00080 1.02853 1.19484 0.94307 0.91226 0.90674 1.86101 1.39553 1.52224 1.46226 1.23389 0.88690 1.01847 0.93953 1.17744 0.85592 0.97182 0.97759 1.84834 1.22343 1.56221 1.67651 1.21167 0.98025 0.95277 0.98072 0.92528 0.93862 0.89229 0.90207 0.94066 0.90330 0.89186 0.95508 0.95534 0.92408 0.88104 0.87431 0.84177 0.82118 0.92064 0.86162 0.91197 0.74062 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.41 -14.42 9.53 -148.98 -1.42 -15.84 16 3 C 0.06 1.85 6.28 71.98 0.45 2.30 16 4 C 0.12 4.34 5.81 86.38 0.50 4.84 16 5 N -0.59 -25.39 2.42 -826.14 -2.00 -27.39 16 6 C 0.26 12.65 4.79 85.63 0.41 13.06 16 7 C -0.55 -28.81 9.30 25.60 0.24 -28.57 16 8 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 9 C 0.02 1.25 5.46 84.66 0.46 1.71 16 10 N -0.92 -50.88 13.29 21.45 0.28 -50.59 16 11 Si 0.95 42.02 29.54 68.60 2.03 44.04 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 14 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 15 C 0.52 21.60 7.67 87.66 0.67 22.28 16 16 O -0.59 -26.62 15.61 -3.04 -0.05 -26.67 16 17 C -0.09 -3.25 4.38 29.10 0.13 -3.12 16 18 C -0.09 -2.90 4.37 -19.86 -0.09 -2.99 16 19 C -0.08 -2.33 9.69 22.27 0.22 -2.11 16 20 C -0.19 -4.68 9.04 22.35 0.20 -4.48 16 21 C 0.09 2.50 6.70 22.57 0.15 2.65 16 22 O -0.33 -8.12 10.28 -79.61 -0.82 -8.94 16 23 C 0.02 0.22 9.81 113.37 1.11 1.34 16 24 C 0.06 1.94 6.72 22.57 0.15 2.10 16 25 O -0.50 -14.20 13.29 -79.63 -1.06 -15.25 16 26 C -0.11 -3.58 9.63 22.35 0.22 -3.36 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 3.03 8.07 -2.39 -0.02 3.01 16 33 H 0.09 3.28 7.42 -2.38 -0.02 3.26 16 34 H 0.03 1.43 7.11 -2.39 -0.02 1.41 16 35 H 0.03 1.33 6.43 -2.39 -0.02 1.31 16 36 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 37 H 0.10 3.95 7.97 -2.38 -0.02 3.94 16 38 H 0.11 3.72 7.34 -2.39 -0.02 3.70 16 39 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 40 H 0.16 2.87 6.30 -2.91 -0.02 2.85 16 41 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 42 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.07 0.80 7.66 -2.39 -0.02 0.79 16 44 H 0.40 7.30 9.06 -74.06 -0.67 6.63 16 45 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -69.82 382.06 3.37 -66.44 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.33 Total: 26.60 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 6.07 Total: 7.60 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: -1.71 Total: -77.98 kcal Atomic # 8 Polarization: -63.36 SS G_CDS: -3.34 Total: -66.71 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -69.82 3.37 -66.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601035913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.781 kcal (2) G-P(sol) polarization free energy of solvation -69.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds