Wall clock time and date at job start Tue Mar 31 2020 14:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99745 * 2 1 4 4 H 1.48508 * 109.47283 * 270.00294 * 3 2 1 5 5 H 1.48502 * 109.47258 * 30.00300 * 3 2 1 6 6 H 1.48498 * 109.46901 * 150.00479 * 3 2 1 7 7 C 1.37878 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99845 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99923 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47052 * 179.97438 * 9 7 2 11 11 C 1.46894 * 110.99918 * 169.99984 * 10 9 7 12 12 C 1.53240 * 109.34223 * 187.25772 * 11 10 9 13 13 N 1.47077 * 108.52107 * 306.17232 * 12 11 10 14 14 C 1.34774 * 120.88564 * 231.18304 * 13 12 11 15 15 O 1.21585 * 120.00543 * 184.99260 * 14 13 12 16 16 N 1.34774 * 119.99512 * 5.00095 * 14 13 12 17 17 C 1.46502 * 119.99800 * 174.91709 * 16 14 13 18 18 C 1.53003 * 109.47143 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.47165 * 180.02562 * 18 17 16 20 20 C 1.52996 * 109.46879 * 180.02562 * 19 18 17 21 21 F 1.39902 * 109.47793 * 59.99806 * 20 19 18 22 22 F 1.39901 * 109.47091 * 180.02562 * 20 19 18 23 23 F 1.39910 * 109.47222 * 299.99475 * 20 19 18 24 24 C 1.47089 * 118.23614 * 51.45786 * 13 12 11 25 25 C 1.46892 * 111.00471 * 294.30748 * 10 9 7 26 26 H 0.96993 * 119.99943 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.46798 * 60.00731 * 9 7 2 28 28 H 1.08994 * 109.47629 * 300.00740 * 9 7 2 29 29 H 1.09004 * 109.49237 * 67.29515 * 11 10 9 30 30 H 1.09000 * 109.49692 * 307.21964 * 11 10 9 31 31 H 1.08995 * 109.62987 * 186.46090 * 12 11 10 32 32 H 1.09002 * 109.62627 * 65.88484 * 12 11 10 33 33 H 0.97000 * 120.00657 * 354.91305 * 16 14 13 34 34 H 1.09002 * 109.47046 * 59.99610 * 17 16 14 35 35 H 1.08991 * 109.47403 * 299.99454 * 17 16 14 36 36 H 1.09005 * 109.47122 * 300.00286 * 18 17 16 37 37 H 1.09002 * 109.47038 * 60.00131 * 18 17 16 38 38 H 1.08998 * 109.46613 * 299.99786 * 19 18 17 39 39 H 1.08988 * 109.47236 * 60.00226 * 19 18 17 40 40 H 1.08998 * 109.62971 * 68.25122 * 24 13 12 41 41 H 1.08999 * 109.62599 * 188.83219 * 24 13 12 42 42 H 1.09003 * 109.49364 * 292.70760 * 25 10 9 43 43 H 1.09003 * 109.49666 * 52.78324 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0018 11 6 1.5216 -4.8935 0.2363 12 6 2.5643 -6.0033 0.4079 13 7 3.4613 -5.9858 -0.7575 14 6 3.7112 -7.1116 -1.4551 15 8 4.5244 -7.0989 -2.3589 16 7 3.0596 -8.2514 -1.1508 17 6 3.2475 -9.4458 -1.9782 18 6 2.4013 -10.5915 -1.4195 19 6 2.5980 -11.8390 -2.2832 20 6 1.7513 -12.9845 -1.7249 21 9 0.4016 -12.6164 -1.7380 22 9 1.9316 -14.1254 -2.5143 23 9 2.1469 -13.2597 -0.4114 24 6 4.0832 -4.7083 -1.1379 25 6 2.9760 -3.6485 -1.2521 26 1 -0.4850 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6247 -2.5571 0.8895 29 1 0.8793 -5.1260 -0.6132 30 1 0.9170 -4.8196 1.1403 31 1 2.0638 -6.9695 0.4703 32 1 3.1405 -5.8270 1.3163 33 1 2.4663 -8.2811 -0.3840 34 1 4.2990 -9.7328 -1.9684 35 1 2.9390 -9.2312 -3.0013 36 1 2.7101 -10.8060 -0.3964 37 1 1.3497 -10.3047 -1.4290 38 1 2.2894 -11.6248 -3.3064 39 1 3.6495 -12.1257 -2.2733 40 1 4.8027 -4.4100 -0.3753 41 1 4.5874 -4.8181 -2.0980 42 1 2.3136 -3.8983 -2.0810 43 1 3.4264 -2.6715 -1.4277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601579490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:01 Heat of formation + Delta-G solvation = -179.192844 kcal Electronic energy + Delta-G solvation = -27264.057170 eV Core-core repulsion = 22736.202452 eV Total energy + Delta-G solvation = -4527.854719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.52475 -48.02718 -47.99758 -40.29041 -37.82340 -36.30465 -34.46268 -33.51586 -32.37611 -30.74415 -28.88830 -27.72068 -25.50506 -24.12273 -23.12729 -22.22487 -22.13571 -20.76996 -19.37136 -18.99451 -18.75189 -17.97227 -17.78943 -16.45307 -16.27989 -16.12677 -15.31148 -14.95480 -14.92270 -14.68554 -14.57148 -14.42378 -14.38144 -14.16315 -14.15012 -14.04014 -13.85236 -13.54621 -13.37109 -13.07320 -12.69523 -12.57602 -12.20414 -12.01713 -11.84464 -11.56312 -11.31553 -11.17083 -10.85080 -10.77148 -10.64640 -10.53583 -10.05766 -9.87967 -9.30856 -9.24589 -8.50691 -8.36953 -7.35424 -6.07980 -4.09819 2.26746 2.64451 3.24218 3.29294 3.33349 3.35811 3.39819 3.51704 3.58696 3.87687 4.33797 4.37440 4.43400 4.49061 4.74923 4.86728 4.90799 5.16685 5.18500 5.26557 5.32726 5.38911 5.51658 5.56022 5.63677 5.80027 5.89894 6.00784 6.16272 6.32133 6.38707 6.53018 6.64205 6.99025 7.19427 7.25720 7.72262 7.93425 7.98908 8.09855 8.45352 8.60869 8.97507 9.54897 11.02838 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.029756 B = 0.002006 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.764542 B =13958.031929 C =14490.751269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.118 3.882 13 N -0.624 5.624 14 C 0.708 3.292 15 O -0.596 6.596 16 N -0.752 5.752 17 C 0.144 3.856 18 C -0.139 4.139 19 C -0.162 4.162 20 C 0.453 3.547 21 F -0.183 7.183 22 F -0.185 7.185 23 F -0.184 7.184 24 C 0.133 3.867 25 C 0.050 3.950 26 H 0.262 0.738 27 H -0.009 1.009 28 H 0.031 0.969 29 H 0.026 0.974 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.396 0.604 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.025 0.975 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.732 -25.419 -2.120 25.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.089 4.089 12 C -0.005 4.005 13 N -0.361 5.361 14 C 0.409 3.591 15 O -0.475 6.475 16 N -0.411 5.411 17 C 0.019 3.981 18 C -0.177 4.177 19 C -0.201 4.201 20 C 0.399 3.601 21 F -0.164 7.164 22 F -0.167 7.167 23 F -0.165 7.165 24 C 0.010 3.990 25 C -0.079 4.079 26 H 0.071 0.929 27 H 0.009 0.991 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.233 0.767 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.043 0.957 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.470 -25.222 -2.399 25.727 hybrid contribution -0.828 0.563 -0.120 1.008 sum 3.642 -24.660 -2.519 25.054 Atomic orbital electron populations 1.69953 1.06097 1.26878 1.50832 1.24998 0.94877 0.99396 0.95343 0.86487 0.79806 0.82993 0.78077 1.20706 1.21272 1.19716 1.21139 0.93517 0.89843 1.50301 0.91750 1.19725 0.89985 0.87217 0.96159 1.62070 1.27938 1.02443 1.33576 1.22382 0.94725 0.90961 1.00864 1.21777 0.91909 0.98191 0.88668 1.47419 1.49512 1.07934 1.31271 1.15789 0.81054 0.80189 0.82020 1.90892 1.37849 1.84668 1.34072 1.45194 1.51163 1.10680 1.34080 1.21004 0.99790 0.82810 0.94504 1.21801 1.02445 0.93212 1.00208 1.22765 1.01956 0.92549 1.02834 1.20571 0.79449 0.84074 0.76053 1.93203 1.35577 1.91352 1.96300 1.93200 1.95153 1.54076 1.74229 1.93198 1.90567 1.94605 1.38140 1.21848 0.95371 0.80449 1.01299 1.22457 0.95191 0.99224 0.90996 0.92872 0.99139 0.95053 0.95536 0.90093 0.91283 0.90553 0.76695 0.91188 0.91327 0.89708 0.89669 0.86715 0.86725 0.91095 0.89353 0.95727 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.51 -13.82 8.41 -34.44 -0.29 -14.11 16 8 H 0.06 1.72 7.13 -52.48 -0.37 1.35 16 9 C 0.19 4.85 4.72 -4.98 -0.02 4.83 16 10 N -0.54 -10.84 4.62 -235.47 -1.09 -11.93 16 11 C 0.04 0.65 5.62 -3.70 -0.02 0.63 16 12 C 0.12 1.50 6.59 -3.60 -0.02 1.48 16 13 N -0.62 -9.21 3.00 -177.91 -0.53 -9.75 16 14 C 0.71 10.45 8.31 -86.92 -0.72 9.73 16 15 O -0.60 -10.84 15.83 5.29 0.08 -10.76 16 16 N -0.75 -7.77 5.47 -65.23 -0.36 -8.12 16 17 C 0.14 1.14 5.68 -4.04 -0.02 1.12 16 18 C -0.14 -0.71 5.09 -26.73 -0.14 -0.84 16 19 C -0.16 -0.67 5.26 -26.73 -0.14 -0.81 16 20 C 0.45 2.86 3.16 37.16 0.12 2.98 16 21 F -0.18 -1.40 16.80 2.25 0.04 -1.36 16 22 F -0.19 -1.36 17.32 2.25 0.04 -1.32 16 23 F -0.18 -1.36 16.80 2.25 0.04 -1.32 16 24 C 0.13 2.15 6.61 -3.36 -0.02 2.13 16 25 C 0.05 0.95 5.47 -3.47 -0.02 0.93 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 28 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 1.25 7.99 -51.93 -0.41 0.83 16 31 H 0.07 0.64 5.63 -51.93 -0.29 0.34 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.40 3.22 5.97 -40.82 -0.24 2.98 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.41 7.80 -51.93 -0.41 0.00 16 37 H 0.08 0.44 7.80 -51.93 -0.41 0.03 16 38 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.11 0.33 8.14 -51.94 -0.42 -0.10 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.09 1.44 7.09 -51.93 -0.37 1.08 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.10 1.96 6.67 -51.93 -0.35 1.61 16 LS Contribution 359.97 15.07 5.42 5.42 Total: -1.00 -32.72 359.97 -8.24 -40.96 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -6.20 Total: -2.08 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -1.40 Total: 9.49 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -1.24 Total: -55.22 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.11 Total: -4.00 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.72 -8.24 -40.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601579490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.230 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds