Wall clock time and date at job start Tue Mar 31 2020 14:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99745 * 2 1 4 4 H 1.48508 * 109.47283 * 270.00294 * 3 2 1 5 5 H 1.48502 * 109.47258 * 30.00300 * 3 2 1 6 6 H 1.48498 * 109.46901 * 150.00479 * 3 2 1 7 7 C 1.37878 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99845 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99923 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47052 * 179.97438 * 9 7 2 11 11 C 1.46894 * 110.99918 * 169.99984 * 10 9 7 12 12 C 1.53240 * 109.34223 * 187.25772 * 11 10 9 13 13 N 1.47077 * 108.52107 * 306.17232 * 12 11 10 14 14 C 1.34774 * 120.88564 * 231.18304 * 13 12 11 15 15 O 1.21585 * 120.00543 * 184.99260 * 14 13 12 16 16 N 1.34774 * 119.99512 * 5.00095 * 14 13 12 17 17 C 1.46502 * 119.99800 * 174.91709 * 16 14 13 18 18 C 1.53003 * 109.47143 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.47165 * 180.02562 * 18 17 16 20 20 C 1.52996 * 109.46879 * 180.02562 * 19 18 17 21 21 F 1.39902 * 109.47793 * 59.99806 * 20 19 18 22 22 F 1.39901 * 109.47091 * 180.02562 * 20 19 18 23 23 F 1.39910 * 109.47222 * 299.99475 * 20 19 18 24 24 C 1.47089 * 118.23614 * 51.45786 * 13 12 11 25 25 C 1.46892 * 111.00471 * 294.30748 * 10 9 7 26 26 H 0.96993 * 119.99943 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.46798 * 60.00731 * 9 7 2 28 28 H 1.08994 * 109.47629 * 300.00740 * 9 7 2 29 29 H 1.09004 * 109.49237 * 67.29515 * 11 10 9 30 30 H 1.09000 * 109.49692 * 307.21964 * 11 10 9 31 31 H 1.08995 * 109.62987 * 186.46090 * 12 11 10 32 32 H 1.09002 * 109.62627 * 65.88484 * 12 11 10 33 33 H 0.97000 * 120.00657 * 354.91305 * 16 14 13 34 34 H 1.09002 * 109.47046 * 59.99610 * 17 16 14 35 35 H 1.08991 * 109.47403 * 299.99454 * 17 16 14 36 36 H 1.09005 * 109.47122 * 300.00286 * 18 17 16 37 37 H 1.09002 * 109.47038 * 60.00131 * 18 17 16 38 38 H 1.08998 * 109.46613 * 299.99786 * 19 18 17 39 39 H 1.08988 * 109.47236 * 60.00226 * 19 18 17 40 40 H 1.08998 * 109.62971 * 68.25122 * 24 13 12 41 41 H 1.08999 * 109.62599 * 188.83219 * 24 13 12 42 42 H 1.09003 * 109.49364 * 292.70760 * 25 10 9 43 43 H 1.09003 * 109.49666 * 52.78324 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0018 11 6 1.5216 -4.8935 0.2363 12 6 2.5643 -6.0033 0.4079 13 7 3.4613 -5.9858 -0.7575 14 6 3.7112 -7.1116 -1.4551 15 8 4.5244 -7.0989 -2.3589 16 7 3.0596 -8.2514 -1.1508 17 6 3.2475 -9.4458 -1.9782 18 6 2.4013 -10.5915 -1.4195 19 6 2.5980 -11.8390 -2.2832 20 6 1.7513 -12.9845 -1.7249 21 9 0.4016 -12.6164 -1.7380 22 9 1.9316 -14.1254 -2.5143 23 9 2.1469 -13.2597 -0.4114 24 6 4.0832 -4.7083 -1.1379 25 6 2.9760 -3.6485 -1.2521 26 1 -0.4850 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6247 -2.5571 0.8895 29 1 0.8793 -5.1260 -0.6132 30 1 0.9170 -4.8196 1.1403 31 1 2.0638 -6.9695 0.4703 32 1 3.1405 -5.8270 1.3163 33 1 2.4663 -8.2811 -0.3840 34 1 4.2990 -9.7328 -1.9684 35 1 2.9390 -9.2312 -3.0013 36 1 2.7101 -10.8060 -0.3964 37 1 1.3497 -10.3047 -1.4290 38 1 2.2894 -11.6248 -3.3064 39 1 3.6495 -12.1257 -2.2733 40 1 4.8027 -4.4100 -0.3753 41 1 4.5874 -4.8181 -2.0980 42 1 2.3136 -3.8983 -2.0810 43 1 3.4264 -2.6715 -1.4277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601579490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:00 Heat of formation + Delta-G solvation = -201.538861 kcal Electronic energy + Delta-G solvation = -27265.026166 eV Core-core repulsion = 22736.202452 eV Total energy + Delta-G solvation = -4528.823715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.04446 -48.55842 -48.52976 -41.44224 -39.17494 -37.07048 -35.97829 -34.55442 -34.06473 -32.02506 -30.19318 -28.84333 -27.11809 -24.99742 -24.28446 -23.82360 -22.70864 -22.15633 -20.50330 -19.50080 -19.42742 -18.94418 -18.51513 -18.34231 -17.25824 -16.99848 -16.71714 -16.16773 -15.99786 -15.74482 -15.47884 -15.37143 -15.28504 -15.25292 -14.99056 -14.96605 -14.69860 -14.69465 -14.44202 -14.04458 -13.66387 -13.54168 -13.44993 -13.11202 -12.96023 -12.73516 -12.58102 -12.39027 -12.34942 -12.28109 -12.14039 -11.99969 -11.74026 -11.37877 -11.16059 -10.61583 -10.25419 -9.58551 -9.03162 -8.20369 -6.29985 1.43154 1.43604 1.54604 1.55775 1.89182 2.10195 2.41115 2.77584 2.93175 3.11967 3.14114 3.14883 3.24764 3.92317 3.94719 3.97826 4.01590 4.07856 4.18377 4.26883 4.44503 4.47664 4.52335 4.58579 4.71325 4.73434 4.86235 4.96021 5.01481 5.03474 5.07077 5.18383 5.23761 5.44887 5.48358 5.64549 5.92829 6.04274 6.26685 6.59294 6.85757 6.92726 7.39820 7.50838 8.90657 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.029756 B = 0.002006 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.764542 B =13958.031929 C =14490.751269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.523 4.523 8 H 0.066 0.934 9 C 0.209 3.791 10 N -0.539 5.539 11 C 0.037 3.963 12 C 0.127 3.873 13 N -0.629 5.629 14 C 0.704 3.296 15 O -0.633 6.633 16 N -0.737 5.737 17 C 0.142 3.858 18 C -0.128 4.128 19 C -0.156 4.156 20 C 0.451 3.549 21 F -0.192 7.192 22 F -0.192 7.192 23 F -0.191 7.191 24 C 0.146 3.854 25 C 0.057 3.943 26 H 0.264 0.736 27 H -0.042 1.042 28 H 0.011 0.989 29 H 0.019 0.981 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.409 0.591 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.010 0.990 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.686 -26.629 -1.533 27.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.561 4.561 8 H 0.084 0.916 9 C 0.083 3.917 10 N -0.264 5.264 11 C -0.092 4.092 12 C 0.004 3.996 13 N -0.366 5.366 14 C 0.406 3.594 15 O -0.515 6.515 16 N -0.396 5.396 17 C 0.018 3.982 18 C -0.166 4.166 19 C -0.194 4.194 20 C 0.397 3.603 21 F -0.174 7.174 22 F -0.174 7.174 23 F -0.172 7.172 24 C 0.022 3.978 25 C -0.073 4.073 26 H 0.073 0.927 27 H -0.024 1.024 28 H 0.029 0.971 29 H 0.037 0.963 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.105 0.895 33 H 0.248 0.752 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.028 0.972 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.410 -26.488 -1.787 27.094 hybrid contribution -1.172 0.848 -0.313 1.480 sum 4.238 -25.640 -2.100 26.072 Atomic orbital electron populations 1.70077 1.07708 1.27878 1.51836 1.25902 0.95725 1.03183 0.94880 0.85398 0.78658 0.78356 0.78302 1.20071 1.20905 1.18725 1.21472 0.93743 0.90977 1.49893 0.91615 1.19370 0.90010 0.88807 0.93546 1.61989 1.27111 1.03117 1.34138 1.22535 0.95819 0.90020 1.00862 1.21853 0.90879 0.98702 0.88156 1.47423 1.49772 1.07523 1.31888 1.15956 0.81036 0.80954 0.81476 1.90867 1.39627 1.85361 1.35648 1.45128 1.50077 1.09967 1.34392 1.21135 1.00383 0.82603 0.94096 1.21697 1.01962 0.92358 1.00597 1.22781 1.02489 0.91100 1.03070 1.20876 0.79277 0.84409 0.75719 1.93185 1.36476 1.91388 1.96317 1.93185 1.95158 1.54657 1.74381 1.93184 1.90571 1.94716 1.38754 1.21579 0.94170 0.80462 1.01584 1.22375 0.95463 0.99512 0.89916 0.92730 1.02448 0.97077 0.96284 0.89279 0.87084 0.89487 0.75221 0.91287 0.91910 0.88932 0.89402 0.85457 0.85127 0.90328 0.89600 0.97216 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.44 13.29 21.45 0.28 -55.15 16 2 C 0.00 0.06 5.46 84.65 0.46 0.53 16 3 Si 0.97 43.61 29.54 68.60 2.03 45.63 16 4 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.52 -28.83 8.41 25.60 0.22 -28.61 16 8 H 0.07 3.53 7.13 -2.91 -0.02 3.51 16 9 C 0.21 10.77 4.72 85.56 0.40 11.18 16 10 N -0.54 -21.98 4.62 -898.90 -4.15 -26.13 16 11 C 0.04 1.15 5.62 86.38 0.49 1.64 16 12 C 0.13 2.88 6.59 86.35 0.57 3.45 16 13 N -0.63 -17.47 3.00 -835.04 -2.51 -19.98 16 14 C 0.70 19.49 8.31 179.06 1.49 20.98 16 15 O -0.63 -22.40 15.83 -3.98 -0.06 -22.46 16 16 N -0.74 -13.24 5.47 -478.54 -2.62 -15.86 16 17 C 0.14 1.91 5.68 86.38 0.49 2.40 16 18 C -0.13 -0.95 5.09 30.60 0.16 -0.79 16 19 C -0.16 -0.90 5.26 30.59 0.16 -0.73 16 20 C 0.45 4.88 3.16 71.98 0.23 5.11 16 21 F -0.19 -2.64 16.80 44.97 0.76 -1.88 16 22 F -0.19 -2.55 17.32 44.97 0.78 -1.77 16 23 F -0.19 -2.49 16.80 44.97 0.76 -1.73 16 24 C 0.15 4.61 6.61 86.50 0.57 5.19 16 25 C 0.06 2.17 5.47 86.54 0.47 2.64 16 26 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 27 H -0.04 -2.41 8.12 -2.38 -0.02 -2.43 16 28 H 0.01 0.61 7.97 -2.39 -0.02 0.59 16 29 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.09 2.65 7.99 -2.39 -0.02 2.63 16 31 H 0.11 1.60 5.63 -2.39 -0.01 1.58 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.41 5.16 5.97 -92.71 -0.55 4.61 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 0.59 7.80 -2.38 -0.02 0.57 16 37 H 0.09 0.65 7.80 -2.39 -0.02 0.63 16 38 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.09 2.79 7.09 -2.39 -0.02 2.77 16 42 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.08 3.29 6.67 -2.39 -0.02 3.28 16 Total: -1.00 -72.02 359.97 1.44 -70.57 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: 0.48 Total: 5.79 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: 5.70 Total: 22.97 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -8.99 Total: -117.12 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.06 Total: -22.46 kcal Atomic # 9 Polarization: -7.68 SS G_CDS: 2.29 Total: -5.39 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -72.02 1.44 -70.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601579490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.965 kcal (2) G-P(sol) polarization free energy of solvation -72.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds