Wall clock time and date at job start Tue Mar 31 2020 13:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34774 * 120.00071 * 2 1 4 4 O 1.21612 * 119.99991 * 185.25829 * 3 2 1 5 5 C 1.47437 * 119.99752 * 5.25682 * 3 2 1 6 6 C 1.39218 * 120.28582 * 313.18091 * 5 3 2 7 7 C 1.38223 * 120.09401 * 180.27931 * 6 5 3 8 8 C 1.38821 * 120.67225 * 359.72236 * 7 6 5 9 9 C 1.37598 * 120.57487 * 359.97438 * 8 7 6 10 10 C 1.40703 * 119.87851 * 0.02562 * 9 8 7 11 11 C 1.40899 * 120.32857 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99818 * 149.54109 * 11 10 9 13 13 C 1.40272 * 119.99607 * 329.53936 * 11 10 9 14 14 N 1.30627 * 120.00593 * 336.26174 * 13 11 10 15 15 Si 1.86797 * 119.99654 * 156.25623 * 13 11 10 16 16 H 1.48503 * 109.47560 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47524 * 300.00280 * 15 13 11 18 18 H 1.48501 * 109.47161 * 60.00058 * 15 13 11 19 19 C 1.46500 * 120.00064 * 179.97438 * 2 1 3 20 20 C 1.52996 * 109.47182 * 60.00037 * 19 2 1 21 21 C 1.53009 * 109.47143 * 180.02562 * 20 19 2 22 22 C 1.53000 * 109.47147 * 59.99814 * 21 20 19 23 23 F 1.39897 * 109.46874 * 179.97438 * 22 21 20 24 24 F 1.39899 * 109.46992 * 60.00139 * 22 21 20 25 25 C 1.52996 * 109.47251 * 300.00119 * 22 21 20 26 26 C 1.53000 * 109.47002 * 299.99915 * 19 2 1 27 27 H 1.09002 * 109.47107 * 85.55985 * 1 2 3 28 28 H 1.09003 * 109.46948 * 205.55584 * 1 2 3 29 29 H 1.09001 * 109.47338 * 325.55939 * 1 2 3 30 30 H 1.07996 * 119.95330 * 359.97438 * 6 5 3 31 31 H 1.07992 * 119.66154 * 179.73754 * 7 6 5 32 32 H 1.08006 * 119.71854 * 180.02562 * 8 7 6 33 33 H 1.07998 * 120.06441 * 180.02562 * 9 8 7 34 34 H 0.97004 * 119.99441 * 354.25228 * 14 13 11 35 35 H 1.08999 * 109.47124 * 180.02562 * 19 2 1 36 36 H 1.08999 * 109.47348 * 300.00178 * 20 19 2 37 37 H 1.09000 * 109.47424 * 60.00264 * 20 19 2 38 38 H 1.09000 * 109.46835 * 299.99707 * 21 20 19 39 39 H 1.08999 * 109.47013 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.47348 * 299.99854 * 25 22 21 41 41 H 1.09000 * 109.47424 * 179.97438 * 25 22 21 42 42 H 1.08999 * 109.47607 * 300.00138 * 26 19 2 43 43 H 1.09000 * 109.47341 * 60.00161 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3512 1.1694 -0.0965 5 6 1.4063 2.4413 0.1170 6 6 0.2770 2.6760 -0.6626 7 6 -0.4035 3.8742 -0.5538 8 6 0.0234 4.8531 0.3332 9 6 1.1324 4.6478 1.1214 10 6 1.8429 3.4367 1.0300 11 6 2.9801 3.2167 1.8322 12 1 3.2321 2.2154 2.1487 13 6 3.7849 4.2983 2.2196 14 7 3.7911 5.3951 1.5101 15 14 4.8477 4.1703 3.7505 16 1 5.5966 5.4384 3.9408 17 1 3.9844 3.9235 4.9333 18 1 5.8067 3.0471 3.5948 19 6 2.1975 -1.2687 0.0006 20 6 1.8279 -2.0716 -1.2483 21 6 2.5925 -3.3969 -1.2474 22 6 2.2223 -4.1984 0.0023 23 9 2.9210 -5.4104 0.0028 24 9 0.8468 -4.4536 0.0021 25 6 2.5919 -3.3955 1.2511 26 6 1.8279 -2.0704 1.2502 27 1 -0.3633 0.0796 -1.0246 28 1 -0.3633 -0.9272 0.4433 29 1 -0.3634 0.8475 0.5812 30 1 -0.0651 1.9227 -1.3568 31 1 -1.2762 4.0506 -1.1650 32 1 -0.5201 5.7836 0.4059 33 1 1.4570 5.4148 1.8089 34 1 3.3052 5.4328 0.6715 35 1 3.2691 -1.0695 0.0009 36 1 0.7563 -2.2707 -1.2483 37 1 2.0913 -1.5005 -2.1386 38 1 3.6642 -3.1981 -1.2473 39 1 2.3295 -3.9687 -2.1373 40 1 3.6636 -3.1967 1.2513 41 1 2.3278 -3.9663 2.1414 42 1 2.0912 -1.4985 2.1399 43 1 0.7562 -2.2696 1.2503 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601584252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:49 Heat of formation + Delta-G solvation = -148.154907 kcal Electronic energy + Delta-G solvation = -28136.677856 eV Core-core repulsion = 24008.645517 eV Total energy + Delta-G solvation = -4128.032339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.99432 -47.98391 -41.28906 -39.39356 -38.20973 -36.07700 -35.41585 -32.24001 -32.07065 -31.34217 -29.79390 -27.81471 -27.07245 -24.63152 -24.24707 -23.05056 -22.72964 -21.05744 -20.47415 -19.54392 -18.42408 -18.15983 -17.63878 -17.33098 -17.28070 -16.66336 -16.52683 -15.81520 -15.75913 -15.33343 -14.99782 -14.78675 -14.55061 -14.48789 -14.31215 -14.27926 -14.04702 -13.90207 -13.68067 -13.46311 -13.32414 -13.24643 -12.97630 -12.76352 -12.67774 -12.64200 -12.49382 -12.33145 -12.01308 -11.89374 -11.60985 -11.39999 -11.27446 -10.93903 -10.53472 -9.65152 -9.55948 -9.49612 -9.17573 -6.49088 0.53651 0.91326 1.45147 1.59934 1.74257 1.95150 2.17417 2.29086 2.66346 2.73726 3.05864 3.33222 3.39441 3.49882 3.67603 3.86550 4.04236 4.06798 4.15881 4.23238 4.27022 4.31900 4.43732 4.51567 4.56833 4.67235 4.73056 4.78214 4.79463 4.88096 4.89408 4.92810 4.94708 5.13685 5.15114 5.20870 5.38185 5.59695 5.71754 5.74915 5.82130 5.94019 6.14426 6.32780 6.49633 6.75782 6.85305 7.43787 7.99707 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.003924 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.303146 B = 7134.636175 C = 8443.728792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.611 5.611 3 C 0.576 3.424 4 O -0.585 6.585 5 C -0.273 4.273 6 C -0.044 4.044 7 C -0.245 4.245 8 C -0.072 4.072 9 C -0.232 4.232 10 C 0.102 3.898 11 C -0.524 4.524 12 H 0.056 0.944 13 C 0.005 3.995 14 N -0.810 5.810 15 Si 1.111 2.889 16 H -0.265 1.265 17 H -0.257 1.257 18 H -0.270 1.270 19 C 0.133 3.867 20 C -0.116 4.116 21 C -0.150 4.150 22 C 0.288 3.712 23 F -0.209 7.209 24 F -0.205 7.205 25 C -0.150 4.150 26 C -0.121 4.121 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.122 0.878 33 H 0.089 0.911 34 H 0.282 0.718 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.068 0.932 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.648 -15.458 -2.278 16.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.343 5.343 3 C 0.369 3.631 4 O -0.466 6.466 5 C -0.277 4.277 6 C -0.062 4.062 7 C -0.264 4.264 8 C -0.091 4.091 9 C -0.251 4.251 10 C 0.098 3.902 11 C -0.551 4.551 12 H 0.075 0.925 13 C -0.212 4.212 14 N -0.433 5.433 15 Si 0.928 3.072 16 H -0.189 1.189 17 H -0.181 1.181 18 H -0.195 1.195 19 C 0.030 3.970 20 C -0.155 4.155 21 C -0.188 4.188 22 C 0.252 3.748 23 F -0.190 7.190 24 F -0.186 7.186 25 C -0.189 4.189 26 C -0.159 4.159 27 H 0.089 0.911 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.149 0.851 31 H 0.152 0.848 32 H 0.140 0.860 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.086 0.914 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.013 -14.596 -1.410 15.497 hybrid contribution -0.908 -0.654 -1.045 1.531 sum -5.921 -15.250 -2.454 16.542 Atomic orbital electron populations 1.22047 0.78171 1.03745 1.02585 1.47821 1.07846 1.04495 1.74151 1.18518 0.86314 0.84438 0.73873 1.90647 1.16280 1.87884 1.51778 1.19702 1.03459 0.97662 1.06878 1.21165 0.91910 0.97145 0.96005 1.20760 1.04520 0.95225 1.05880 1.21110 0.94814 0.98554 0.94587 1.21131 0.99472 0.99267 1.05229 1.17742 0.92091 0.91210 0.89121 1.20559 1.09179 0.96589 1.28816 0.92545 1.28377 0.97956 0.90461 1.04407 1.70496 1.32371 1.28687 1.11705 0.83096 0.75095 0.77612 0.71378 1.18895 1.18080 1.19485 1.21146 0.97414 0.82797 0.95660 1.21761 1.01804 0.94281 0.97626 1.22468 1.03613 0.96082 0.96674 1.21221 0.73234 0.80787 0.99520 1.92991 1.79163 1.49086 1.97762 1.92975 1.32972 1.94884 1.97752 1.22447 1.03555 0.95958 0.96890 1.21778 1.01839 0.94508 0.97816 0.91098 0.89041 0.91697 0.85068 0.84818 0.86009 0.89300 0.90560 0.90586 0.89415 0.90624 0.87990 0.87626 0.88015 0.87884 0.91375 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.94 8.05 127.77 1.03 2.97 16 2 N -0.61 -20.31 2.76 -826.46 -2.28 -22.60 16 3 C 0.58 26.26 6.60 86.67 0.57 26.83 16 4 O -0.59 -31.62 15.06 -4.07 -0.06 -31.68 16 5 C -0.27 -12.93 5.03 -19.70 -0.10 -13.03 16 6 C -0.04 -1.71 7.68 22.50 0.17 -1.53 16 7 C -0.24 -9.18 10.03 22.41 0.22 -8.95 16 8 C -0.07 -3.01 10.01 22.26 0.22 -2.79 16 9 C -0.23 -11.59 7.96 22.72 0.18 -11.41 16 10 C 0.10 5.47 5.21 -21.11 -0.11 5.36 16 11 C -0.52 -29.58 7.73 23.42 0.18 -29.40 16 12 H 0.06 3.31 7.14 -2.91 -0.02 3.29 16 13 C 0.00 0.25 4.95 85.37 0.42 0.67 16 14 N -0.81 -45.15 12.47 21.88 0.27 -44.87 16 15 Si 1.11 45.71 30.00 68.60 2.06 47.76 16 16 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 17 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 18 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 19 C 0.13 3.67 2.51 44.99 0.11 3.78 16 20 C -0.12 -2.42 5.08 30.60 0.16 -2.27 16 21 C -0.15 -2.63 5.45 30.60 0.17 -2.46 16 22 C 0.29 5.55 2.10 30.59 0.06 5.61 16 23 F -0.21 -4.46 17.06 44.97 0.77 -3.70 16 24 F -0.20 -4.31 16.02 44.97 0.72 -3.59 16 25 C -0.15 -2.80 5.45 30.58 0.17 -2.64 16 26 C -0.12 -2.74 5.07 30.58 0.15 -2.59 16 27 H 0.07 1.51 7.06 -2.39 -0.02 1.50 16 28 H 0.09 1.79 6.43 -2.39 -0.02 1.77 16 29 H 0.06 1.90 6.09 -2.39 -0.01 1.89 16 30 H 0.13 4.14 6.07 -2.91 -0.02 4.12 16 31 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 32 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 33 H 0.09 4.67 6.82 -2.91 -0.02 4.65 16 34 H 0.28 16.39 6.79 -92.71 -0.63 15.76 16 35 H 0.08 2.54 6.91 -2.39 -0.02 2.53 16 36 H 0.09 1.62 7.33 -2.39 -0.02 1.60 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.09 1.77 6.32 -2.39 -0.02 1.75 16 Total: -1.00 -68.37 345.56 6.27 -62.10 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 1.17 Total: 28.42 kcal Atomic # 6 Polarization: -35.46 SS G_CDS: 3.62 Total: -31.84 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: -2.01 Total: -67.47 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.06 Total: -31.68 kcal Atomic # 9 Polarization: -8.78 SS G_CDS: 1.49 Total: -7.29 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.06 Total: 47.76 kcal Total: -68.37 6.27 -62.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601584252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.056 kcal (2) G-P(sol) polarization free energy of solvation -68.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds