Wall clock time and date at job start Tue Mar 31 2020 13:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34953 * 126.03664 * 2 1 4 4 C 1.35312 * 107.74337 * 180.14797 * 3 2 1 5 5 C 1.50707 * 126.03397 * 179.87401 * 4 3 2 6 6 H 1.08989 * 109.40805 * 26.19047 * 5 4 3 7 7 C 1.53251 * 109.40373 * 266.34449 * 5 4 3 8 8 S 1.81900 * 108.50347 * 177.95804 * 7 5 4 9 9 O 1.42093 * 109.47214 * 295.46568 * 8 7 5 10 10 C 1.81895 * 101.91240 * 51.30948 * 8 7 5 11 11 C 1.53245 * 108.50698 * 308.69244 * 10 8 7 12 12 N 1.46467 * 109.86265 * 62.00605 * 11 10 8 13 13 C 1.46894 * 111.00614 * 162.23667 * 12 11 10 14 14 C 1.53001 * 109.47129 * 62.02081 * 13 12 11 15 15 C 1.50698 * 115.55213 * 306.13232 * 14 13 12 16 16 H 1.08000 * 119.99886 * 115.77444 * 15 14 13 17 17 C 1.37875 * 120.00371 * 295.77781 * 15 14 13 18 18 N 1.31517 * 119.99740 * 354.80324 * 17 15 14 19 19 Si 1.86802 * 120.00270 * 174.80145 * 17 15 14 20 20 H 1.48497 * 109.47011 * 90.00171 * 19 17 15 21 21 H 1.48503 * 109.47264 * 209.99943 * 19 17 15 22 22 H 1.48498 * 109.47182 * 329.99752 * 19 17 15 23 23 C 1.53001 * 117.49808 * 160.46595 * 14 13 12 24 24 C 1.53002 * 117.49807 * 91.80510 * 14 13 12 25 25 C 1.39868 * 107.92354 * 359.60185 * 4 3 2 26 26 N 1.30828 * 108.20283 * 0.24765 * 25 4 3 27 27 H 1.08996 * 109.47335 * 270.30847 * 1 2 3 28 28 H 1.08998 * 109.47181 * 30.31813 * 1 2 3 29 29 H 1.09000 * 109.46885 * 150.31517 * 1 2 3 30 30 H 1.08001 * 126.12605 * 359.97438 * 3 2 1 31 31 H 1.09005 * 109.62874 * 58.25772 * 7 5 4 32 32 H 1.09000 * 109.79746 * 297.76016 * 7 5 4 33 33 H 1.09003 * 109.63362 * 188.99005 * 10 8 7 34 34 H 1.08995 * 109.79668 * 68.49623 * 10 8 7 35 35 H 1.09005 * 109.40800 * 182.12655 * 11 10 8 36 36 H 1.09000 * 109.40761 * 301.88765 * 11 10 8 37 37 H 1.08994 * 109.47581 * 182.02286 * 13 12 11 38 38 H 1.09005 * 109.46921 * 302.02492 * 13 12 11 39 39 H 0.97004 * 119.99820 * 185.02819 * 18 17 15 40 40 H 1.09004 * 117.49779 * 359.97438 * 23 14 13 41 41 H 1.08994 * 117.49738 * 145.02292 * 23 14 13 42 42 H 1.08998 * 117.49472 * 214.97620 * 24 14 13 43 43 H 1.09000 * 117.49659 * 0.02562 * 24 14 13 44 44 H 1.07998 * 125.89952 * 180.26254 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0033 5 6 4.7679 1.5454 -0.0072 6 1 4.5255 2.5062 0.4466 7 6 5.2313 1.7667 -1.4512 8 16 6.6712 2.8780 -1.4316 9 8 6.2789 4.1529 -0.9419 10 6 7.7540 2.0681 -0.2149 11 6 6.9434 1.8053 1.0588 12 7 5.8323 0.8980 0.7632 13 6 5.3007 0.2980 1.9941 14 6 4.7511 1.3997 2.9025 15 6 5.7088 2.5195 3.2185 16 1 5.4956 3.5234 2.8822 17 6 6.8572 2.2624 3.9369 18 7 7.0673 1.0631 4.4339 19 14 8.1148 3.6176 4.2042 20 1 7.7938 4.3511 5.4549 21 1 9.4701 3.0206 4.3144 22 1 8.0804 4.5585 3.0558 23 6 3.7617 0.9872 3.9942 24 6 3.2693 1.7551 2.7649 25 6 3.5347 -0.7321 0.0038 26 7 2.2892 -1.1327 0.0058 27 1 -0.3634 0.0055 1.0276 28 1 -0.3633 0.8871 -0.5188 29 1 -0.3633 -0.8928 -0.5089 30 1 1.9281 2.1194 -0.0004 31 1 4.4260 2.2208 -2.0286 32 1 5.5107 0.8132 -1.8994 33 1 8.5972 2.7192 0.0156 34 1 8.1200 1.1237 -0.6174 35 1 7.5889 1.3540 1.8123 36 1 6.5498 2.7482 1.4386 37 1 4.5007 -0.3984 1.7429 38 1 6.0978 -0.2358 2.5118 39 1 7.8380 0.9009 5.0001 40 1 3.5020 -0.0691 4.0650 41 1 3.8032 1.5260 4.9407 42 1 2.9872 2.7988 2.9034 43 1 2.6859 1.2037 2.0275 44 1 4.4054 -1.3709 0.0073 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602817113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:08 Heat of formation + Delta-G solvation = 106.138028 kcal Electronic energy + Delta-G solvation = -27626.000997 eV Core-core repulsion = 24095.128765 eV Total energy + Delta-G solvation = -3530.872232 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.16710 -38.26055 -35.30457 -35.07449 -33.22180 -32.27386 -31.41703 -29.73842 -28.94748 -26.46099 -25.76108 -24.40855 -22.83248 -21.32629 -20.90387 -20.34675 -19.54329 -18.80547 -17.16997 -16.56452 -15.95836 -15.42227 -15.05646 -14.89880 -14.61702 -14.40901 -14.12435 -13.91713 -13.72417 -13.27802 -13.07710 -12.79276 -12.72054 -12.47452 -12.32164 -12.08093 -11.65444 -11.42189 -11.17719 -11.15392 -11.03900 -10.82072 -10.65928 -10.43564 -10.35307 -10.21291 -10.16114 -9.48990 -9.24930 -9.07364 -8.74591 -8.58383 -8.11408 -8.01521 -7.56141 -7.24780 -6.09643 -4.03885 2.15706 2.19186 2.77926 2.98108 3.21487 3.22870 3.31213 3.38561 4.26210 4.34467 4.63905 4.79518 5.12470 5.16984 5.17573 5.37298 5.40256 5.43718 5.49110 5.61829 5.73567 5.78945 5.95743 5.98427 6.09967 6.20959 6.21332 6.42697 6.47366 6.56978 6.67850 6.74436 6.78831 6.91302 7.00923 7.07602 7.24727 7.27040 7.37146 7.45104 7.53747 7.82657 7.98232 8.03289 8.16555 8.44156 8.84314 9.47746 10.96970 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012210 B = 0.006895 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.724598 B = 4059.846394 C = 5551.362029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.385 5.385 3 C 0.055 3.945 4 C -0.198 4.198 5 C 0.169 3.831 6 H 0.055 0.945 7 C -0.417 4.417 8 S 1.208 4.792 9 O -0.857 6.857 10 C -0.434 4.434 11 C 0.057 3.943 12 N -0.529 5.529 13 C 0.096 3.904 14 C 0.029 3.971 15 C -0.490 4.490 16 H 0.056 0.944 17 C 0.077 3.923 18 N -0.873 5.873 19 Si 0.870 3.130 20 H -0.280 1.280 21 H -0.282 1.282 22 H -0.268 1.268 23 C -0.177 4.177 24 C -0.219 4.219 25 C 0.074 3.926 26 N -0.309 5.309 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.165 0.835 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.261 0.739 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.612 -2.666 -14.077 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.168 5.168 3 C -0.090 4.090 4 C -0.211 4.211 5 C 0.058 3.942 6 H 0.073 0.927 7 C -0.555 4.555 8 S 1.408 4.592 9 O -0.853 6.853 10 C -0.573 4.573 11 C -0.071 4.071 12 N -0.252 5.252 13 C -0.032 4.032 14 C 0.027 3.973 15 C -0.527 4.527 16 H 0.074 0.926 17 C -0.127 4.127 18 N -0.509 5.509 19 Si 0.697 3.303 20 H -0.206 1.206 21 H -0.208 1.208 22 H -0.193 1.193 23 C -0.216 4.216 24 C -0.256 4.256 25 C -0.113 4.113 26 N -0.130 5.130 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.182 0.818 31 H 0.116 0.884 32 H 0.137 0.863 33 H 0.116 0.884 34 H 0.132 0.868 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.039 -3.291 -14.842 16.015 hybrid contribution -0.157 1.913 3.076 3.625 sum -5.196 -1.378 -11.766 12.936 Atomic orbital electron populations 1.21721 0.74985 1.03784 1.02999 1.48278 1.06101 1.03837 1.58582 1.22067 0.91072 0.93022 1.02870 1.19837 0.93556 0.93990 1.13702 1.19549 0.88262 0.95220 0.91166 0.92694 1.27653 1.14302 1.12375 1.01194 1.69681 0.94172 0.83296 1.12064 1.93123 1.81271 1.29342 1.81521 1.27691 1.08971 1.09358 1.11329 1.22486 0.91948 0.99584 0.93119 1.61601 1.08102 1.33912 1.21559 1.21826 0.99011 0.95316 0.87028 1.19526 0.86343 0.96123 0.95299 1.20331 1.03897 0.93229 1.35249 0.92554 1.24858 0.97448 0.94923 0.95443 1.69947 1.28936 1.20124 1.31887 0.86910 0.81459 0.82819 0.79102 1.20603 1.20760 1.19268 1.22607 1.08495 0.96897 0.93559 1.23282 1.01710 0.98899 1.01728 1.23695 0.94650 0.94741 0.98175 1.77303 1.01767 1.08157 1.25808 0.91196 0.90011 0.89731 0.81776 0.88360 0.86274 0.88368 0.86759 0.89429 0.89397 0.92573 0.89624 0.92873 0.92333 0.90914 0.91702 0.90156 0.79880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.05 11.47 59.85 0.69 1.74 16 2 N -0.38 -5.61 4.01 -68.16 -0.27 -5.88 16 3 C 0.05 0.84 8.81 -17.22 -0.15 0.69 16 4 C -0.20 -3.31 2.61 -105.05 -0.27 -3.59 16 5 C 0.17 3.01 1.60 -68.96 -0.11 2.90 16 6 H 0.06 1.20 7.22 -51.94 -0.37 0.83 16 7 C -0.42 -5.73 5.93 37.29 0.22 -5.50 16 8 S 1.21 16.62 13.81 -107.50 -1.48 15.13 16 9 O -0.86 -17.85 18.14 -35.23 -0.64 -18.49 16 10 C -0.43 -6.80 6.67 37.28 0.25 -6.55 16 11 C 0.06 1.19 3.63 -3.93 -0.01 1.17 16 12 N -0.53 -10.24 4.34 -228.43 -0.99 -11.23 16 13 C 0.10 2.11 4.69 -3.83 -0.02 2.09 16 14 C 0.03 0.69 0.90 -155.66 -0.14 0.55 16 15 C -0.49 -13.02 5.27 -34.44 -0.18 -13.20 16 16 H 0.06 1.60 7.55 -52.49 -0.40 1.21 16 17 C 0.08 2.03 3.45 -17.82 -0.06 1.97 16 18 N -0.87 -23.71 12.32 55.43 0.68 -23.03 16 19 Si 0.87 21.07 29.53 -169.99 -5.02 16.05 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.18 -4.26 9.96 -26.69 -0.27 -4.52 16 24 C -0.22 -4.89 8.45 -26.69 -0.23 -5.12 16 25 C 0.07 1.22 9.12 -17.37 -0.16 1.06 16 26 N -0.31 -5.16 12.58 30.62 0.39 -4.78 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.17 2.24 8.06 -52.49 -0.42 1.82 16 31 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16 35 H 0.09 2.05 6.47 -51.93 -0.34 1.72 16 36 H 0.09 2.18 4.93 -51.93 -0.26 1.92 16 37 H 0.06 1.18 4.35 -51.93 -0.23 0.96 16 38 H 0.09 2.12 7.15 -51.93 -0.37 1.75 16 39 H 0.26 6.87 8.32 -40.82 -0.34 6.54 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.07 1.85 8.14 -51.93 -0.42 1.42 16 42 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 43 H 0.08 1.65 3.97 -51.93 -0.21 1.44 16 44 H 0.18 2.86 7.80 -52.49 -0.41 2.45 16 LS Contribution 345.83 15.07 5.21 5.21 Total: -1.00 -34.70 345.83 -8.93 -43.63 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.36 Total: 9.68 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: -0.44 Total: -26.31 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: -0.20 Total: -44.92 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.64 Total: -18.49 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 16.62 SS G_CDS: -1.48 Total: 15.13 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.70 -8.93 -43.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602817113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.767 kcal (2) G-P(sol) polarization free energy of solvation -34.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds