Wall clock time and date at job start Tue Mar 31 2020 13:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34953 * 126.03664 * 2 1 4 4 C 1.35312 * 107.74337 * 180.14797 * 3 2 1 5 5 C 1.50707 * 126.03397 * 179.87401 * 4 3 2 6 6 H 1.08989 * 109.40805 * 26.19047 * 5 4 3 7 7 C 1.53251 * 109.40373 * 266.34449 * 5 4 3 8 8 S 1.81900 * 108.50347 * 177.95804 * 7 5 4 9 9 O 1.42093 * 109.47214 * 295.46568 * 8 7 5 10 10 C 1.81895 * 101.91240 * 51.30948 * 8 7 5 11 11 C 1.53245 * 108.50698 * 308.69244 * 10 8 7 12 12 N 1.46467 * 109.86265 * 62.00605 * 11 10 8 13 13 C 1.46894 * 111.00614 * 162.23667 * 12 11 10 14 14 C 1.53001 * 109.47129 * 62.02081 * 13 12 11 15 15 C 1.50698 * 115.55213 * 306.13232 * 14 13 12 16 16 H 1.08000 * 119.99886 * 115.77444 * 15 14 13 17 17 C 1.37875 * 120.00371 * 295.77781 * 15 14 13 18 18 N 1.31517 * 119.99740 * 354.80324 * 17 15 14 19 19 Si 1.86802 * 120.00270 * 174.80145 * 17 15 14 20 20 H 1.48497 * 109.47011 * 90.00171 * 19 17 15 21 21 H 1.48503 * 109.47264 * 209.99943 * 19 17 15 22 22 H 1.48498 * 109.47182 * 329.99752 * 19 17 15 23 23 C 1.53001 * 117.49808 * 160.46595 * 14 13 12 24 24 C 1.53002 * 117.49807 * 91.80510 * 14 13 12 25 25 C 1.39868 * 107.92354 * 359.60185 * 4 3 2 26 26 N 1.30828 * 108.20283 * 0.24765 * 25 4 3 27 27 H 1.08996 * 109.47335 * 270.30847 * 1 2 3 28 28 H 1.08998 * 109.47181 * 30.31813 * 1 2 3 29 29 H 1.09000 * 109.46885 * 150.31517 * 1 2 3 30 30 H 1.08001 * 126.12605 * 359.97438 * 3 2 1 31 31 H 1.09005 * 109.62874 * 58.25772 * 7 5 4 32 32 H 1.09000 * 109.79746 * 297.76016 * 7 5 4 33 33 H 1.09003 * 109.63362 * 188.99005 * 10 8 7 34 34 H 1.08995 * 109.79668 * 68.49623 * 10 8 7 35 35 H 1.09005 * 109.40800 * 182.12655 * 11 10 8 36 36 H 1.09000 * 109.40761 * 301.88765 * 11 10 8 37 37 H 1.08994 * 109.47581 * 182.02286 * 13 12 11 38 38 H 1.09005 * 109.46921 * 302.02492 * 13 12 11 39 39 H 0.97004 * 119.99820 * 185.02819 * 18 17 15 40 40 H 1.09004 * 117.49779 * 359.97438 * 23 14 13 41 41 H 1.08994 * 117.49738 * 145.02292 * 23 14 13 42 42 H 1.08998 * 117.49472 * 214.97620 * 24 14 13 43 43 H 1.09000 * 117.49659 * 0.02562 * 24 14 13 44 44 H 1.07998 * 125.89952 * 180.26254 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0033 5 6 4.7679 1.5454 -0.0072 6 1 4.5255 2.5062 0.4466 7 6 5.2313 1.7667 -1.4512 8 16 6.6712 2.8780 -1.4316 9 8 6.2789 4.1529 -0.9419 10 6 7.7540 2.0681 -0.2149 11 6 6.9434 1.8053 1.0588 12 7 5.8323 0.8980 0.7632 13 6 5.3007 0.2980 1.9941 14 6 4.7511 1.3997 2.9025 15 6 5.7088 2.5195 3.2185 16 1 5.4956 3.5234 2.8822 17 6 6.8572 2.2624 3.9369 18 7 7.0673 1.0631 4.4339 19 14 8.1148 3.6176 4.2042 20 1 7.7938 4.3511 5.4549 21 1 9.4701 3.0206 4.3144 22 1 8.0804 4.5585 3.0558 23 6 3.7617 0.9872 3.9942 24 6 3.2693 1.7551 2.7649 25 6 3.5347 -0.7321 0.0038 26 7 2.2892 -1.1327 0.0058 27 1 -0.3634 0.0055 1.0276 28 1 -0.3633 0.8871 -0.5188 29 1 -0.3633 -0.8928 -0.5089 30 1 1.9281 2.1194 -0.0004 31 1 4.4260 2.2208 -2.0286 32 1 5.5107 0.8132 -1.8994 33 1 8.5972 2.7192 0.0156 34 1 8.1200 1.1237 -0.6174 35 1 7.5889 1.3540 1.8123 36 1 6.5498 2.7482 1.4386 37 1 4.5007 -0.3984 1.7429 38 1 6.0978 -0.2358 2.5118 39 1 7.8380 0.9009 5.0001 40 1 3.5020 -0.0691 4.0650 41 1 3.8032 1.5260 4.9407 42 1 2.9872 2.7988 2.9034 43 1 2.6859 1.2037 2.0275 44 1 4.4054 -1.3709 0.0073 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602817113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:08 Heat of formation + Delta-G solvation = 79.956007 kcal Electronic energy + Delta-G solvation = -27627.136335 eV Core-core repulsion = 24095.128765 eV Total energy + Delta-G solvation = -3532.007570 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.42765 -39.89696 -37.02470 -36.57827 -34.64318 -33.95562 -32.84483 -31.23644 -30.15009 -27.89780 -27.41766 -26.01276 -24.18951 -23.09931 -22.42598 -21.65028 -21.22701 -20.35958 -18.47515 -18.21313 -17.49364 -16.82340 -16.64858 -16.35229 -16.09198 -15.76974 -15.66897 -15.48139 -15.07286 -14.89296 -14.45414 -14.27607 -13.96798 -13.75244 -13.54695 -13.47287 -13.25670 -13.14818 -12.93254 -12.78135 -12.58208 -12.45532 -12.29796 -12.24222 -12.03541 -11.93451 -11.56276 -11.32685 -10.93042 -10.70780 -10.54595 -10.12693 -9.98825 -9.38718 -8.98968 -8.79790 -8.17891 -6.14249 0.97145 0.99346 1.23628 1.29187 1.38387 1.72684 1.78805 1.96307 2.31424 2.94896 3.06233 3.28278 3.50632 3.74692 4.00648 4.16839 4.23222 4.29095 4.37163 4.44534 4.47232 4.49643 4.53895 4.65499 4.69251 4.70633 4.75855 4.80033 4.87063 4.94700 4.97067 5.11630 5.20354 5.31286 5.33353 5.44844 5.52268 5.53458 5.64602 5.75878 5.81094 6.16784 6.23083 6.42904 6.53128 6.74970 6.82547 7.37725 8.88326 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012210 B = 0.006895 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.724598 B = 4059.846394 C = 5551.362029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.378 5.378 3 C 0.055 3.945 4 C -0.216 4.216 5 C 0.171 3.829 6 H 0.011 0.989 7 C -0.414 4.414 8 S 1.290 4.710 9 O -0.927 6.927 10 C -0.439 4.439 11 C 0.060 3.940 12 N -0.510 5.510 13 C 0.108 3.892 14 C 0.016 3.984 15 C -0.493 4.493 16 H 0.027 0.973 17 C 0.052 3.948 18 N -0.890 5.890 19 Si 0.911 3.089 20 H -0.281 1.281 21 H -0.269 1.269 22 H -0.280 1.280 23 C -0.186 4.186 24 C -0.195 4.195 25 C 0.066 3.934 26 N -0.326 5.326 27 H 0.075 0.925 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.181 0.819 31 H 0.117 0.883 32 H 0.156 0.844 33 H 0.100 0.900 34 H 0.154 0.846 35 H 0.057 0.943 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.262 0.738 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.104 0.896 44 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.379 -3.633 -16.428 17.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.161 5.161 3 C -0.092 4.092 4 C -0.229 4.229 5 C 0.060 3.940 6 H 0.029 0.971 7 C -0.553 4.553 8 S 1.491 4.509 9 O -0.923 6.923 10 C -0.577 4.577 11 C -0.069 4.069 12 N -0.233 5.233 13 C -0.020 4.020 14 C 0.014 3.986 15 C -0.531 4.531 16 H 0.045 0.955 17 C -0.150 4.150 18 N -0.528 5.528 19 Si 0.737 3.263 20 H -0.207 1.207 21 H -0.194 1.194 22 H -0.205 1.205 23 C -0.224 4.224 24 C -0.232 4.232 25 C -0.119 4.119 26 N -0.148 5.148 27 H 0.094 0.906 28 H 0.129 0.871 29 H 0.115 0.885 30 H 0.198 0.802 31 H 0.135 0.865 32 H 0.174 0.826 33 H 0.118 0.882 34 H 0.172 0.828 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.121 0.879 44 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -5.809 -4.259 -17.191 18.639 hybrid contribution -0.049 2.215 3.793 4.393 sum -5.859 -2.044 -13.398 14.765 Atomic orbital electron populations 1.22136 0.72277 1.05976 1.04095 1.48646 1.07596 1.02952 1.56912 1.22338 0.90927 0.93967 1.01971 1.19766 0.93579 0.94018 1.15565 1.19516 0.88579 0.93167 0.92738 0.97108 1.27697 1.14608 1.14153 0.98804 1.68905 0.92675 0.80460 1.08872 1.92987 1.82694 1.34270 1.82370 1.27782 1.09008 1.11764 1.09169 1.22184 0.92436 0.97047 0.95233 1.61686 1.08233 1.33315 1.20054 1.21604 0.98218 0.94677 0.87518 1.19611 0.86796 0.96282 0.95913 1.20283 1.04912 0.92671 1.35207 0.95506 1.25184 0.98276 0.96165 0.95358 1.70002 1.29379 1.20956 1.32439 0.86287 0.80717 0.81025 0.78238 1.20659 1.19361 1.20520 1.22550 1.09499 0.97249 0.93150 1.23236 1.00739 0.98311 1.00872 1.23771 0.95005 0.94614 0.98533 1.77265 1.02026 1.09295 1.26188 0.90597 0.87052 0.88457 0.80213 0.86458 0.82611 0.88176 0.82810 0.92469 0.93843 0.91189 0.92578 0.92800 0.91578 0.92942 0.92695 0.87860 0.79366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.55 11.47 127.77 1.47 3.01 16 2 N -0.38 -9.93 4.01 -369.57 -1.48 -11.41 16 3 C 0.05 1.55 8.81 83.54 0.74 2.28 16 4 C -0.22 -6.82 2.61 -20.14 -0.05 -6.87 16 5 C 0.17 5.90 1.60 44.34 0.07 5.97 16 6 H 0.01 0.48 7.22 -2.39 -0.02 0.46 16 7 C -0.41 -10.15 5.93 72.07 0.43 -9.72 16 8 S 1.29 33.13 13.81 -56.49 -0.78 32.35 16 9 O -0.93 -38.60 18.14 -148.98 -2.70 -41.30 16 10 C -0.44 -13.11 6.67 72.06 0.48 -12.63 16 11 C 0.06 2.53 3.63 86.47 0.31 2.85 16 12 N -0.51 -19.55 4.34 -876.62 -3.80 -23.36 16 13 C 0.11 4.79 4.69 86.30 0.40 5.20 16 14 C 0.02 0.77 0.90 -52.93 -0.05 0.72 16 15 C -0.49 -27.32 5.27 25.60 0.13 -27.18 16 16 H 0.03 1.62 7.55 -2.91 -0.02 1.59 16 17 C 0.05 2.83 3.45 84.65 0.29 3.12 16 18 N -0.89 -49.59 12.32 21.45 0.26 -49.33 16 19 Si 0.91 44.47 29.53 68.60 2.03 46.49 16 20 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 23 C -0.19 -9.08 9.96 30.62 0.30 -8.78 16 24 C -0.19 -8.72 8.45 30.62 0.26 -8.47 16 25 C 0.07 2.05 9.12 85.24 0.78 2.83 16 26 N -0.33 -10.07 12.58 -57.03 -0.72 -10.79 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 30 H 0.18 4.45 8.06 -2.91 -0.02 4.43 16 31 H 0.12 2.55 8.14 -2.38 -0.02 2.53 16 32 H 0.16 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.15 3.37 8.14 -2.39 -0.02 3.35 16 35 H 0.06 2.75 6.47 -2.38 -0.02 2.73 16 36 H 0.04 2.24 4.93 -2.39 -0.01 2.23 16 37 H 0.07 2.91 4.35 -2.39 -0.01 2.90 16 38 H 0.06 2.83 7.15 -2.38 -0.02 2.81 16 39 H 0.26 14.05 8.32 -92.71 -0.77 13.28 16 40 H 0.07 3.09 8.14 -2.38 -0.02 3.08 16 41 H 0.05 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.10 4.12 3.97 -2.39 -0.01 4.11 16 44 H 0.19 5.48 7.80 -2.91 -0.02 5.46 16 Total: -1.00 -78.87 345.83 -0.62 -79.50 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 1.01 Total: 25.51 kcal Atomic # 6 Polarization: -53.23 SS G_CDS: 5.57 Total: -47.66 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -5.74 Total: -94.88 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -2.70 Total: -41.30 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 33.13 SS G_CDS: -0.78 Total: 32.35 kcal Total: -78.87 -0.62 -79.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602817113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.454 kcal (2) G-P(sol) polarization free energy of solvation -78.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds