Wall clock time and date at job start Tue Mar 31 2020 13:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34950 * 126.03786 * 2 1 4 4 C 1.35317 * 107.74213 * 179.97438 * 3 2 1 5 5 C 1.50705 * 126.03456 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.34178 * 19.80722 * 5 4 3 7 7 C 1.53247 * 109.40758 * 259.99720 * 5 4 3 8 8 S 1.81897 * 108.50586 * 177.87749 * 7 5 4 9 9 O 1.42108 * 109.46741 * 167.15259 * 8 7 5 10 10 C 1.81897 * 101.91117 * 51.31277 * 8 7 5 11 11 C 1.53253 * 108.50403 * 308.68959 * 10 8 7 12 12 N 1.46470 * 109.85873 * 62.00885 * 11 10 8 13 13 C 1.46894 * 110.99747 * 162.23212 * 12 11 10 14 14 C 1.52994 * 109.47351 * 285.83659 * 13 12 11 15 15 C 1.50702 * 115.54927 * 157.80656 * 14 13 12 16 16 H 1.07998 * 119.99832 * 145.66435 * 15 14 13 17 17 C 1.37879 * 120.00092 * 325.66255 * 15 14 13 18 18 N 1.31517 * 119.99996 * 163.49629 * 17 15 14 19 19 Si 1.86803 * 119.99926 * 343.49423 * 17 15 14 20 20 H 1.48500 * 109.46929 * 95.65127 * 19 17 15 21 21 H 1.48505 * 109.46970 * 215.65058 * 19 17 15 22 22 H 1.48496 * 109.46885 * 335.65149 * 19 17 15 23 23 C 1.52999 * 117.49903 * 12.10203 * 14 13 12 24 24 C 1.52996 * 117.50292 * 303.47771 * 14 13 12 25 25 C 1.39864 * 107.92278 * 0.26684 * 4 3 2 26 26 N 1.30841 * 108.20267 * 359.55235 * 25 4 3 27 27 H 1.08993 * 109.47555 * 89.99161 * 1 2 3 28 28 H 1.08995 * 109.47445 * 209.99754 * 1 2 3 29 29 H 1.09006 * 109.46942 * 329.99302 * 1 2 3 30 30 H 1.07994 * 126.12817 * 0.02562 * 3 2 1 31 31 H 1.08998 * 109.63444 * 297.58940 * 7 5 4 32 32 H 1.09007 * 109.62818 * 58.17742 * 7 5 4 33 33 H 1.09005 * 109.62793 * 188.98730 * 10 8 7 34 34 H 1.08997 * 109.79779 * 68.49271 * 10 8 7 35 35 H 1.08998 * 109.40624 * 301.88593 * 11 10 8 36 36 H 1.09003 * 109.40458 * 182.12869 * 11 10 8 37 37 H 1.09002 * 109.47189 * 45.83987 * 13 12 11 38 38 H 1.09000 * 109.46823 * 165.83905 * 13 12 11 39 39 H 0.96995 * 119.99714 * 180.02562 * 18 17 15 40 40 H 1.09001 * 117.49588 * 359.97438 * 23 14 13 41 41 H 1.08999 * 117.50037 * 145.01730 * 23 14 13 42 42 H 1.08989 * 117.50404 * 214.97645 * 24 14 13 43 43 H 1.09009 * 117.49329 * 359.97438 * 24 14 13 44 44 H 1.08001 * 125.89685 * 179.73601 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0006 5 6 4.7680 1.5452 0.0013 6 1 4.4969 2.5417 0.3499 7 6 5.3288 1.6384 -1.4218 8 16 6.7659 2.7534 -1.4042 9 8 7.4777 2.6279 -2.6277 10 6 7.7622 2.0604 -0.0493 11 6 6.8664 1.9091 1.1850 12 7 5.7764 0.9740 0.8971 13 6 5.1615 0.4842 2.1379 14 6 6.0975 -0.5238 2.8077 15 6 5.8875 -0.7226 4.2867 16 1 6.0432 -1.6959 4.7281 17 6 5.4968 0.3381 5.0763 18 7 5.0031 0.1184 6.2753 19 14 5.6686 2.0870 4.4429 20 1 4.3795 2.5285 3.8525 21 1 6.0324 2.9870 5.5668 22 1 6.7305 2.1358 3.4060 23 6 7.5299 -0.6178 2.2782 24 6 6.5311 -1.7394 1.9861 25 6 3.5346 -0.7321 -0.0053 26 7 2.2890 -1.1328 0.0005 27 1 -0.3634 0.0002 -1.0276 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5140 30 1 1.9282 2.1193 0.0004 31 1 5.6370 0.6490 -1.7595 32 1 4.5654 2.0356 -2.0909 33 1 8.5889 2.7333 0.1786 34 1 8.1531 1.0853 -0.3398 35 1 6.4496 2.8804 1.4512 36 1 7.4585 1.5298 2.0179 37 1 4.9874 1.3224 2.8127 38 1 4.2124 0.0007 1.9068 39 1 4.7279 0.8646 6.8306 40 1 7.8052 0.0383 1.4524 41 1 8.3207 -0.8233 2.9996 42 1 6.6649 -2.6828 2.5152 43 1 6.1491 -1.8212 0.9684 44 1 4.4053 -1.3710 -0.0104 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602817116.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:11 Heat of formation + Delta-G solvation = 94.526764 kcal Electronic energy + Delta-G solvation = -27014.600848 eV Core-core repulsion = 23483.225114 eV Total energy + Delta-G solvation = -3531.375734 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.30257 -40.20497 -37.32734 -36.66131 -34.44449 -34.18939 -32.93172 -31.52764 -30.22173 -28.35296 -27.47661 -25.81868 -24.64452 -23.21449 -22.44466 -21.80632 -20.88721 -20.59944 -18.48636 -18.27265 -17.86448 -17.02484 -16.69804 -16.43798 -16.23807 -16.00287 -15.80796 -15.45092 -15.21696 -14.92614 -14.64990 -14.41213 -14.12172 -13.97774 -13.68841 -13.52847 -13.34773 -13.09148 -12.91658 -12.88760 -12.73751 -12.50444 -12.30418 -12.17854 -11.79494 -11.56502 -11.35590 -11.09538 -11.01419 -10.66182 -10.45651 -10.29658 -10.15186 -9.30150 -9.05877 -9.02882 -8.28420 -6.25423 0.76487 1.03908 1.32686 1.47443 1.59552 1.64490 1.79029 1.91688 2.41790 2.76789 2.90774 3.01194 3.60234 3.69073 3.97859 4.05061 4.12413 4.23495 4.27645 4.31020 4.36637 4.42614 4.48296 4.49706 4.58689 4.61859 4.65699 4.73292 4.82502 4.93279 4.96871 5.02201 5.08083 5.12799 5.16983 5.29558 5.32501 5.51637 5.63767 5.73044 5.74531 6.10052 6.22562 6.36036 6.43476 6.75666 6.81951 7.33631 8.87120 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009070 B = 0.007405 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.202010 B = 3780.224773 C = 5618.014576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.383 5.383 3 C 0.068 3.932 4 C -0.245 4.245 5 C 0.186 3.814 6 H 0.097 0.903 7 C -0.410 4.410 8 S 1.288 4.712 9 O -0.923 6.923 10 C -0.426 4.426 11 C 0.049 3.951 12 N -0.553 5.553 13 C 0.102 3.898 14 C 0.001 3.999 15 C -0.500 4.500 16 H 0.016 0.984 17 C 0.008 3.992 18 N -0.947 5.947 19 Si 0.944 3.056 20 H -0.264 1.264 21 H -0.315 1.315 22 H -0.193 1.193 23 C -0.196 4.196 24 C -0.180 4.180 25 C 0.061 3.939 26 N -0.344 5.344 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.220 0.780 31 H 0.073 0.927 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.024 0.976 38 H 0.077 0.923 39 H 0.265 0.735 40 H 0.121 0.879 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.092 0.908 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.647 13.221 -15.639 21.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.165 5.165 3 C -0.079 4.079 4 C -0.258 4.258 5 C 0.076 3.924 6 H 0.114 0.886 7 C -0.549 4.549 8 S 1.489 4.511 9 O -0.919 6.919 10 C -0.565 4.565 11 C -0.079 4.079 12 N -0.278 5.278 13 C -0.025 4.025 14 C 0.000 4.000 15 C -0.538 4.538 16 H 0.034 0.966 17 C -0.189 4.189 18 N -0.585 5.585 19 Si 0.770 3.230 20 H -0.191 1.191 21 H -0.244 1.244 22 H -0.115 1.115 23 C -0.233 4.233 24 C -0.217 4.217 25 C -0.124 4.124 26 N -0.166 5.166 27 H 0.109 0.891 28 H 0.098 0.902 29 H 0.134 0.866 30 H 0.236 0.764 31 H 0.092 0.908 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.042 0.958 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.138 0.862 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.110 0.890 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.260 12.659 -16.360 21.922 hybrid contribution 0.881 -1.484 0.798 1.901 sum -6.379 11.174 -15.562 20.192 Atomic orbital electron populations 1.22153 0.72175 1.05626 1.04566 1.48773 1.07873 1.03411 1.56416 1.22923 0.89848 0.94934 1.00181 1.19968 0.94747 0.93371 1.17688 1.19480 0.86739 0.96252 0.89888 0.88560 1.27603 1.14288 1.11834 1.01142 1.69546 0.88942 1.07782 0.84847 1.92980 1.72329 1.84268 1.42331 1.27605 1.09521 1.09491 1.09860 1.22394 0.92794 0.95782 0.96949 1.61012 1.11772 1.39854 1.15191 1.21685 0.97151 0.95630 0.88007 1.19164 0.93361 0.96335 0.91129 1.20603 1.46031 0.95465 0.91681 0.96566 1.26139 0.92785 1.05076 0.94921 1.70158 1.41726 1.33565 1.13059 0.86166 0.81271 0.77058 0.78464 1.19108 1.24439 1.11540 1.23438 0.93725 1.02876 1.03256 1.22624 1.06785 0.92472 0.99797 1.23730 0.94529 0.95879 0.98310 1.77324 1.02502 1.10256 1.26532 0.89142 0.90219 0.86584 0.76393 0.90827 0.84408 0.84236 0.90247 0.90407 0.88577 0.95844 0.90450 0.92626 0.86167 0.92356 0.92964 0.88989 0.81563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.32 11.47 127.77 1.47 2.78 16 2 N -0.38 -9.07 4.01 -369.58 -1.48 -10.55 16 3 C 0.07 1.37 11.40 83.54 0.95 2.32 16 4 C -0.24 -6.13 3.56 -20.14 -0.07 -6.20 16 5 C 0.19 3.95 2.32 44.33 0.10 4.05 16 6 H 0.10 1.37 7.91 -2.39 -0.02 1.35 16 7 C -0.41 -7.78 5.93 72.06 0.43 -7.35 16 8 S 1.29 23.01 13.81 -56.49 -0.78 22.23 16 9 O -0.92 -29.09 18.14 -148.98 -2.70 -31.80 16 10 C -0.43 -8.68 6.41 72.07 0.46 -8.22 16 11 C 0.05 1.18 2.69 86.47 0.23 1.41 16 12 N -0.55 -15.43 3.37 -876.62 -2.96 -18.39 16 13 C 0.10 3.80 4.02 86.30 0.35 4.14 16 14 C 0.00 0.07 1.70 -52.93 -0.09 -0.02 16 15 C -0.50 -28.71 9.55 25.60 0.24 -28.46 16 16 H 0.02 1.06 8.06 -2.91 -0.02 1.04 16 17 C 0.01 0.46 5.39 84.65 0.46 0.91 16 18 N -0.95 -58.73 13.96 21.45 0.30 -58.44 16 19 Si 0.94 39.92 23.99 68.60 1.65 41.56 16 20 H -0.26 -10.26 6.78 99.48 0.67 -9.59 16 21 H -0.31 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.19 -6.67 3.39 99.48 0.34 -6.34 16 23 C -0.20 -7.81 8.15 30.59 0.25 -7.56 16 24 C -0.18 -7.54 9.82 30.59 0.30 -7.24 16 25 C 0.06 1.93 9.74 85.23 0.83 2.76 16 26 N -0.34 -11.16 12.58 -57.02 -0.72 -11.88 16 27 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.22 2.07 8.06 -2.91 -0.02 2.05 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.14 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.14 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.08 1.99 7.51 -2.39 -0.02 1.97 16 35 H 0.08 1.40 7.54 -2.39 -0.02 1.38 16 36 H 0.10 2.84 3.59 -2.39 -0.01 2.84 16 37 H 0.02 0.93 1.95 -2.39 0.00 0.93 16 38 H 0.08 3.08 4.60 -2.39 -0.01 3.07 16 39 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 40 H 0.12 4.10 4.05 -2.39 -0.01 4.09 16 41 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.09 3.49 6.82 -2.38 -0.02 3.47 16 44 H 0.17 5.57 6.74 -2.91 -0.02 5.55 16 Total: -1.00 -86.90 339.56 -0.16 -87.06 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 0.62 Total: 26.87 kcal Atomic # 6 Polarization: -52.59 SS G_CDS: 5.91 Total: -46.68 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -4.86 Total: -99.25 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -2.70 Total: -31.80 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 1.65 Total: 41.56 kcal Atomic # 16 Polarization: 23.01 SS G_CDS: -0.78 Total: 22.23 kcal Total: -86.90 -0.16 -87.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602817116.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.587 kcal (2) G-P(sol) polarization free energy of solvation -86.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds