Wall clock time and date at job start Tue Mar 31 2020 13:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34947 * 126.03656 * 2 1 4 4 C 1.35315 * 107.74462 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.03644 * 179.97438 * 4 3 2 6 6 H 1.08994 * 109.34409 * 339.80139 * 5 4 3 7 7 C 1.53250 * 109.40299 * 99.60521 * 5 4 3 8 8 S 1.81909 * 108.50197 * 182.11856 * 7 5 4 9 9 O 1.42097 * 109.46909 * 192.85047 * 8 7 5 10 10 C 1.81895 * 101.91484 * 308.69530 * 8 7 5 11 11 C 1.53247 * 108.50646 * 51.30280 * 10 8 7 12 12 N 1.46463 * 109.86187 * 297.99828 * 11 10 8 13 13 C 1.46902 * 111.00248 * 197.76726 * 12 11 10 14 14 C 1.52995 * 109.47210 * 70.01930 * 13 12 11 15 15 C 1.50706 * 115.55013 * 268.19893 * 14 13 12 16 16 H 1.07993 * 120.00035 * 114.75942 * 15 14 13 17 17 C 1.37878 * 119.99729 * 294.75316 * 15 14 13 18 18 N 1.31513 * 120.00431 * 355.41781 * 17 15 14 19 19 Si 1.86803 * 119.99651 * 175.41840 * 17 15 14 20 20 H 1.48496 * 109.47291 * 60.00185 * 19 17 15 21 21 H 1.48504 * 109.47053 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47034 * 299.99777 * 19 17 15 23 23 C 1.53000 * 117.49837 * 122.48887 * 14 13 12 24 24 C 1.52995 * 60.00181 * 252.50989 * 23 14 13 25 25 C 1.39864 * 107.92249 * 0.25908 * 4 3 2 26 26 N 1.30838 * 108.20035 * 359.55791 * 25 4 3 27 27 H 1.08995 * 109.46824 * 90.00259 * 1 2 3 28 28 H 1.08997 * 109.46834 * 210.00124 * 1 2 3 29 29 H 1.09005 * 109.47020 * 330.00239 * 1 2 3 30 30 H 1.07997 * 126.12636 * 0.03644 * 3 2 1 31 31 H 1.09000 * 109.63465 * 301.82140 * 7 5 4 32 32 H 1.08999 * 109.63120 * 62.41927 * 7 5 4 33 33 H 1.09007 * 109.62875 * 291.60237 * 10 8 7 34 34 H 1.09002 * 109.63204 * 171.01120 * 10 8 7 35 35 H 1.09004 * 109.40704 * 177.88028 * 11 10 8 36 36 H 1.08996 * 109.40784 * 58.11762 * 11 10 8 37 37 H 1.08998 * 109.47560 * 190.02555 * 13 12 11 38 38 H 1.09004 * 109.46623 * 310.02380 * 13 12 11 39 39 H 0.96995 * 120.00346 * 185.02592 * 18 17 15 40 40 H 1.08993 * 117.50151 * 0.02562 * 23 14 13 41 41 H 1.09005 * 117.49512 * 145.02309 * 23 14 13 42 42 H 1.08998 * 117.49824 * 252.51108 * 24 23 14 43 43 H 1.08992 * 117.49977 * 107.48901 * 24 23 14 44 44 H 1.07998 * 125.90215 * 179.73845 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5453 -0.0013 6 1 4.4983 2.5399 -0.3564 7 6 5.3229 1.6465 1.4236 8 16 6.7602 2.7614 1.4055 9 8 7.4671 2.6428 2.6324 10 6 7.7619 2.0610 0.0584 11 6 6.8711 1.9026 -1.1785 12 7 5.7800 0.9692 -0.8897 13 6 5.1700 0.4723 -2.1303 14 6 6.1514 -0.4601 -2.8432 15 6 7.0545 0.1973 -3.8549 16 1 8.1208 0.2290 -3.6868 17 6 6.5193 0.7582 -4.9951 18 7 5.2333 0.6410 -5.2444 19 14 7.6209 1.6845 -6.1858 20 1 8.6759 0.7724 -6.6959 21 1 6.8085 2.1873 -7.3228 22 1 8.2537 2.8307 -5.4852 23 6 5.6845 -1.8877 -3.1346 24 6 6.7233 -1.6308 -2.0411 25 6 3.5347 -0.7321 -0.0070 26 7 2.2892 -1.1327 -0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.9282 2.1193 0.0006 31 1 4.5569 2.0474 2.0874 32 1 5.6299 0.6590 1.7680 33 1 8.1488 1.0870 0.3582 34 1 8.5896 2.7326 -0.1698 35 1 7.4665 1.5186 -2.0068 36 1 6.4553 2.8724 -1.4519 37 1 4.2571 -0.0737 -1.8930 38 1 4.9313 1.3142 -2.7803 39 1 4.8693 0.9714 -6.0805 40 1 4.6782 -2.1625 -2.8187 41 1 6.0305 -2.3517 -4.0583 42 1 7.7525 -1.9257 -2.2453 43 1 6.4004 -1.7365 -1.0054 44 1 4.4054 -1.3710 -0.0129 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602817117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:14 Heat of formation + Delta-G solvation = 89.991559 kcal Electronic energy + Delta-G solvation = -26627.857578 eV Core-core repulsion = 23096.285182 eV Total energy + Delta-G solvation = -3531.572396 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.13363 -38.11365 -35.79456 -35.29752 -33.23536 -32.01367 -31.73174 -29.84333 -29.12660 -26.52482 -25.78898 -24.32719 -23.13159 -21.42027 -20.96273 -20.65878 -19.49180 -18.78452 -17.16670 -16.70903 -16.12436 -15.49188 -15.19672 -14.90155 -14.69427 -14.60321 -14.34709 -14.27636 -13.76418 -13.56801 -13.12407 -12.93977 -12.74343 -12.61822 -12.53067 -12.13761 -11.77406 -11.64792 -11.47099 -11.24357 -11.07004 -10.91089 -10.76821 -10.68306 -10.43990 -10.29778 -10.07402 -9.47863 -9.36914 -9.15935 -8.74681 -8.48623 -8.20434 -8.02730 -7.86224 -7.51462 -6.05077 -4.09539 1.86373 2.09685 2.68616 2.78960 3.08816 3.26473 3.32531 3.35183 4.02291 4.36544 4.37322 4.63526 4.96939 5.11434 5.18516 5.25248 5.26327 5.34044 5.36614 5.50633 5.56098 5.61314 5.64434 5.72661 5.85271 5.98548 6.20219 6.25364 6.34799 6.46074 6.57625 6.62884 6.78636 6.86243 6.94743 6.98511 7.08964 7.17553 7.20096 7.50242 7.56434 7.82577 7.91528 7.95159 8.04473 8.48372 8.90808 9.53150 11.02142 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009365 B = 0.006126 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.090663 B = 4569.766049 C = 6496.474273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.384 5.384 3 C 0.052 3.948 4 C -0.215 4.215 5 C 0.186 3.814 6 H 0.054 0.946 7 C -0.412 4.412 8 S 1.205 4.795 9 O -0.872 6.872 10 C -0.418 4.418 11 C 0.075 3.925 12 N -0.544 5.544 13 C 0.105 3.895 14 C 0.058 3.942 15 C -0.493 4.493 16 H 0.058 0.942 17 C 0.073 3.927 18 N -0.877 5.877 19 Si 0.883 3.117 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.275 1.275 23 C -0.178 4.178 24 C -0.192 4.192 25 C 0.082 3.918 26 N -0.304 5.304 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.171 0.829 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.039 0.961 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.260 0.740 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.797 6.446 9.087 13.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.166 5.166 3 C -0.094 4.094 4 C -0.227 4.227 5 C 0.075 3.925 6 H 0.072 0.928 7 C -0.551 4.551 8 S 1.406 4.594 9 O -0.867 6.867 10 C -0.558 4.558 11 C -0.053 4.053 12 N -0.269 5.269 13 C -0.021 4.021 14 C 0.057 3.943 15 C -0.530 4.530 16 H 0.076 0.924 17 C -0.131 4.131 18 N -0.513 5.513 19 Si 0.711 3.289 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.200 1.200 23 C -0.217 4.217 24 C -0.229 4.229 25 C -0.105 4.105 26 N -0.125 5.125 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.188 0.812 31 H 0.125 0.875 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.138 0.862 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.517 5.982 9.845 14.327 hybrid contribution 1.251 -0.457 -0.865 1.588 sum -7.266 5.524 8.980 12.805 Atomic orbital electron populations 1.21750 0.74766 1.03883 1.03157 1.48337 1.06292 1.03918 1.58086 1.22179 0.90789 0.93254 1.03198 1.19821 0.93411 0.94242 1.15271 1.19314 0.88136 0.94775 0.90295 0.92795 1.27592 1.13283 1.12555 1.01643 1.70070 0.91363 1.10096 0.87882 1.93066 1.71131 1.83314 1.39178 1.27523 1.08741 1.09184 1.10339 1.21853 0.92737 0.94607 0.96150 1.61189 1.10276 1.37664 1.17786 1.21744 0.95615 0.98516 0.86234 1.18767 0.95614 0.85368 0.94556 1.20478 0.92566 1.35987 1.04010 0.92354 1.24958 0.94729 0.95772 0.97624 1.69966 1.11493 1.45926 1.23953 0.86802 0.80715 0.80544 0.80824 1.20386 1.21399 1.20017 1.22729 0.96058 1.04645 0.98244 1.22691 0.97041 1.08445 0.94728 1.23745 0.94705 0.94742 0.97297 1.77373 1.01815 1.08052 1.25277 0.90978 0.89712 0.89892 0.81206 0.87465 0.88830 0.88823 0.87226 0.86152 0.94279 0.92031 0.93200 0.93007 0.92213 0.90844 0.91393 0.91265 0.80091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.92 11.47 59.85 0.69 1.60 16 2 N -0.38 -5.16 4.01 -68.16 -0.27 -5.43 16 3 C 0.05 0.65 11.40 -17.22 -0.20 0.46 16 4 C -0.21 -3.16 3.67 -105.05 -0.39 -3.55 16 5 C 0.19 2.57 2.33 -68.97 -0.16 2.41 16 6 H 0.05 0.64 7.91 -51.93 -0.41 0.23 16 7 C -0.41 -5.27 5.93 37.29 0.22 -5.04 16 8 S 1.20 14.99 13.81 -107.50 -1.48 13.51 16 9 O -0.87 -16.17 18.14 -35.23 -0.64 -16.81 16 10 C -0.42 -5.87 6.67 37.29 0.25 -5.62 16 11 C 0.08 1.21 5.26 -3.93 -0.02 1.19 16 12 N -0.54 -9.15 3.89 -228.44 -0.89 -10.04 16 13 C 0.11 2.16 4.35 -3.83 -0.02 2.14 16 14 C 0.06 1.32 1.11 -155.66 -0.17 1.15 16 15 C -0.49 -12.30 6.83 -34.44 -0.24 -12.54 16 16 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.07 1.85 5.23 -17.82 -0.09 1.75 16 18 N -0.88 -23.37 12.56 55.43 0.70 -22.67 16 19 Si 0.88 19.81 29.54 -169.99 -5.02 14.79 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 C -0.18 -4.10 9.88 -26.73 -0.26 -4.36 16 24 C -0.19 -4.08 9.70 -26.73 -0.26 -4.34 16 25 C 0.08 1.36 9.58 -17.37 -0.17 1.20 16 26 N -0.30 -5.08 12.58 30.62 0.39 -4.70 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.09 1.50 8.14 -51.92 -0.42 1.08 16 34 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.12 2.33 5.32 -51.93 -0.28 2.05 16 36 H 0.04 0.55 7.91 -51.93 -0.41 0.14 16 37 H 0.06 1.29 4.31 -51.93 -0.22 1.07 16 38 H 0.05 1.16 7.17 -51.93 -0.37 0.79 16 39 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 40 H 0.06 1.34 8.03 -51.93 -0.42 0.93 16 41 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 42 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.07 1.38 7.61 -51.93 -0.40 0.99 16 44 H 0.18 3.10 7.52 -52.49 -0.39 2.70 16 LS Contribution 362.44 15.07 5.46 5.46 Total: -1.00 -33.84 362.44 -9.25 -43.09 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.67 Total: 6.36 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -0.81 Total: -23.55 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: -0.08 Total: -42.84 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.64 Total: -16.81 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 16 Polarization: 14.99 SS G_CDS: -1.48 Total: 13.51 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.84 -9.25 -43.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602817117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.078 kcal (2) G-P(sol) polarization free energy of solvation -33.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds