Wall clock time and date at job start Tue Mar 31 2020 13:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34947 * 126.03656 * 2 1 4 4 C 1.35315 * 107.74462 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.03644 * 179.97438 * 4 3 2 6 6 H 1.08994 * 109.34409 * 339.80139 * 5 4 3 7 7 C 1.53250 * 109.40299 * 99.60521 * 5 4 3 8 8 S 1.81909 * 108.50197 * 182.11856 * 7 5 4 9 9 O 1.42097 * 109.46909 * 192.85047 * 8 7 5 10 10 C 1.81895 * 101.91484 * 308.69530 * 8 7 5 11 11 C 1.53247 * 108.50646 * 51.30280 * 10 8 7 12 12 N 1.46463 * 109.86187 * 297.99828 * 11 10 8 13 13 C 1.46902 * 111.00248 * 197.76726 * 12 11 10 14 14 C 1.52995 * 109.47210 * 70.01930 * 13 12 11 15 15 C 1.50706 * 115.55013 * 268.19893 * 14 13 12 16 16 H 1.07993 * 120.00035 * 114.75942 * 15 14 13 17 17 C 1.37878 * 119.99729 * 294.75316 * 15 14 13 18 18 N 1.31513 * 120.00431 * 355.41781 * 17 15 14 19 19 Si 1.86803 * 119.99651 * 175.41840 * 17 15 14 20 20 H 1.48496 * 109.47291 * 60.00185 * 19 17 15 21 21 H 1.48504 * 109.47053 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47034 * 299.99777 * 19 17 15 23 23 C 1.53000 * 117.49837 * 122.48887 * 14 13 12 24 24 C 1.52995 * 60.00181 * 252.50989 * 23 14 13 25 25 C 1.39864 * 107.92249 * 0.25908 * 4 3 2 26 26 N 1.30838 * 108.20035 * 359.55791 * 25 4 3 27 27 H 1.08995 * 109.46824 * 90.00259 * 1 2 3 28 28 H 1.08997 * 109.46834 * 210.00124 * 1 2 3 29 29 H 1.09005 * 109.47020 * 330.00239 * 1 2 3 30 30 H 1.07997 * 126.12636 * 0.03644 * 3 2 1 31 31 H 1.09000 * 109.63465 * 301.82140 * 7 5 4 32 32 H 1.08999 * 109.63120 * 62.41927 * 7 5 4 33 33 H 1.09007 * 109.62875 * 291.60237 * 10 8 7 34 34 H 1.09002 * 109.63204 * 171.01120 * 10 8 7 35 35 H 1.09004 * 109.40704 * 177.88028 * 11 10 8 36 36 H 1.08996 * 109.40784 * 58.11762 * 11 10 8 37 37 H 1.08998 * 109.47560 * 190.02555 * 13 12 11 38 38 H 1.09004 * 109.46623 * 310.02380 * 13 12 11 39 39 H 0.96995 * 120.00346 * 185.02592 * 18 17 15 40 40 H 1.08993 * 117.50151 * 0.02562 * 23 14 13 41 41 H 1.09005 * 117.49512 * 145.02309 * 23 14 13 42 42 H 1.08998 * 117.49824 * 252.51108 * 24 23 14 43 43 H 1.08992 * 117.49977 * 107.48901 * 24 23 14 44 44 H 1.07998 * 125.90215 * 179.73845 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5453 -0.0013 6 1 4.4983 2.5399 -0.3564 7 6 5.3229 1.6465 1.4236 8 16 6.7602 2.7614 1.4055 9 8 7.4671 2.6428 2.6324 10 6 7.7619 2.0610 0.0584 11 6 6.8711 1.9026 -1.1785 12 7 5.7800 0.9692 -0.8897 13 6 5.1700 0.4723 -2.1303 14 6 6.1514 -0.4601 -2.8432 15 6 7.0545 0.1973 -3.8549 16 1 8.1208 0.2290 -3.6868 17 6 6.5193 0.7582 -4.9951 18 7 5.2333 0.6410 -5.2444 19 14 7.6209 1.6845 -6.1858 20 1 8.6759 0.7724 -6.6959 21 1 6.8085 2.1873 -7.3228 22 1 8.2537 2.8307 -5.4852 23 6 5.6845 -1.8877 -3.1346 24 6 6.7233 -1.6308 -2.0411 25 6 3.5347 -0.7321 -0.0070 26 7 2.2892 -1.1327 -0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.9282 2.1193 0.0006 31 1 4.5569 2.0474 2.0874 32 1 5.6299 0.6590 1.7680 33 1 8.1488 1.0870 0.3582 34 1 8.5896 2.7326 -0.1698 35 1 7.4665 1.5186 -2.0068 36 1 6.4553 2.8724 -1.4519 37 1 4.2571 -0.0737 -1.8930 38 1 4.9313 1.3142 -2.7803 39 1 4.8693 0.9714 -6.0805 40 1 4.6782 -2.1625 -2.8187 41 1 6.0305 -2.3517 -4.0583 42 1 7.7525 -1.9257 -2.2453 43 1 6.4004 -1.7365 -1.0054 44 1 4.4054 -1.3710 -0.0129 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602817117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:14 Heat of formation + Delta-G solvation = 66.220381 kcal Electronic energy + Delta-G solvation = -26628.888373 eV Core-core repulsion = 23096.285182 eV Total energy + Delta-G solvation = -3532.603191 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.21425 -39.53558 -37.38820 -36.64714 -34.25720 -33.95697 -32.85117 -31.17885 -30.16445 -27.71797 -27.40349 -25.85603 -24.27605 -22.83887 -22.63098 -21.70283 -20.79123 -20.39128 -18.28228 -18.05093 -17.65290 -16.60857 -16.56264 -16.30000 -16.04871 -15.82502 -15.76593 -15.44376 -15.11114 -14.92365 -14.41706 -14.35118 -13.86121 -13.68736 -13.60444 -13.32042 -13.11106 -12.96953 -12.95199 -12.80200 -12.65822 -12.44486 -12.33251 -12.20159 -12.03235 -11.84765 -11.43970 -11.16590 -10.73823 -10.60920 -10.36691 -10.20004 -9.89486 -9.26494 -9.00700 -8.87095 -8.00435 -6.09122 0.80768 1.06702 1.47858 1.50141 1.55875 1.66895 1.82725 1.95251 2.49719 2.87515 3.09441 3.24384 3.70372 3.81560 4.09481 4.11930 4.25820 4.35838 4.37882 4.43391 4.44724 4.50499 4.55645 4.65741 4.71194 4.74938 4.80359 4.85714 4.98395 5.07249 5.12333 5.14198 5.22144 5.29375 5.30750 5.46044 5.53873 5.68095 5.72262 5.75783 5.96100 6.27909 6.44272 6.55412 6.66443 6.85214 6.97021 7.55344 9.06022 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009365 B = 0.006126 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.090663 B = 4569.766049 C = 6496.474273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.382 5.382 3 C 0.067 3.933 4 C -0.238 4.238 5 C 0.186 3.814 6 H 0.087 0.913 7 C -0.408 4.408 8 S 1.285 4.715 9 O -0.927 6.927 10 C -0.420 4.420 11 C 0.074 3.926 12 N -0.552 5.552 13 C 0.130 3.870 14 C 0.047 3.953 15 C -0.498 4.498 16 H 0.050 0.950 17 C 0.034 3.966 18 N -0.904 5.904 19 Si 0.938 3.062 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.261 1.261 23 C -0.188 4.188 24 C -0.172 4.172 25 C 0.062 3.938 26 N -0.343 5.343 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.122 0.878 30 H 0.218 0.782 31 H 0.137 0.863 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.130 0.870 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.022 0.978 39 H 0.258 0.742 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.940 9.052 10.002 16.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.165 5.165 3 C -0.080 4.080 4 C -0.251 4.251 5 C 0.076 3.924 6 H 0.105 0.895 7 C -0.547 4.547 8 S 1.486 4.514 9 O -0.923 6.923 10 C -0.559 4.559 11 C -0.055 4.055 12 N -0.277 5.277 13 C 0.003 3.997 14 C 0.046 3.954 15 C -0.536 4.536 16 H 0.068 0.932 17 C -0.167 4.167 18 N -0.542 5.542 19 Si 0.765 3.235 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.186 1.186 23 C -0.227 4.227 24 C -0.209 4.209 25 C -0.124 4.124 26 N -0.165 5.165 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.140 0.860 30 H 0.234 0.766 31 H 0.155 0.845 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.148 0.852 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.644 8.579 10.775 16.814 hybrid contribution 1.517 -1.336 -1.141 2.321 sum -8.128 7.243 9.634 14.537 Atomic orbital electron populations 1.22151 0.72136 1.05967 1.04175 1.48741 1.07811 1.03324 1.56591 1.22866 0.89829 0.94859 1.00431 1.19966 0.94737 0.93375 1.16984 1.19429 0.87158 0.95969 0.89883 0.89492 1.27583 1.14114 1.11425 1.01568 1.69452 0.89112 1.08042 0.84777 1.92949 1.72652 1.84427 1.42236 1.27538 1.09482 1.08566 1.10308 1.21765 0.92424 0.95327 0.95935 1.61057 1.11236 1.39109 1.16332 1.21268 0.94714 0.96774 0.86930 1.18941 0.96034 0.85643 0.94784 1.20653 0.92439 1.35846 1.04652 0.93207 1.25511 0.95727 0.96468 0.98981 1.70077 1.12781 1.47054 1.24258 0.85930 0.78963 0.79664 0.78963 1.20986 1.21497 1.18585 1.22627 0.96476 1.05466 0.98096 1.22615 0.96249 1.07218 0.94840 1.23604 0.94411 0.95853 0.98531 1.77280 1.02317 1.10228 1.26701 0.90434 0.89566 0.85977 0.76591 0.84534 0.91224 0.91227 0.85213 0.89618 0.91670 0.92603 0.95973 0.93272 0.92263 0.92842 0.91780 0.90028 0.82054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.37 11.47 127.77 1.47 2.83 16 2 N -0.38 -9.43 4.01 -369.56 -1.48 -10.91 16 3 C 0.07 1.47 11.40 83.54 0.95 2.43 16 4 C -0.24 -6.59 3.67 -20.14 -0.07 -6.66 16 5 C 0.19 4.70 2.33 44.34 0.10 4.81 16 6 H 0.09 1.68 7.91 -2.39 -0.02 1.66 16 7 C -0.41 -9.41 5.93 72.07 0.43 -8.98 16 8 S 1.28 28.80 13.81 -56.49 -0.78 28.02 16 9 O -0.93 -32.84 18.14 -148.98 -2.70 -35.54 16 10 C -0.42 -11.20 6.67 72.06 0.48 -10.72 16 11 C 0.07 2.29 5.26 86.47 0.46 2.75 16 12 N -0.55 -18.16 3.89 -876.64 -3.41 -21.57 16 13 C 0.13 5.37 4.35 86.30 0.38 5.75 16 14 C 0.05 2.18 1.11 -52.93 -0.06 2.12 16 15 C -0.50 -25.29 6.83 25.60 0.17 -25.12 16 16 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16 17 C 0.03 1.73 5.23 84.66 0.44 2.17 16 18 N -0.90 -48.74 12.56 21.45 0.27 -48.47 16 19 Si 0.94 40.68 29.54 68.60 2.03 42.71 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 22 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 23 C -0.19 -8.97 9.88 30.59 0.30 -8.67 16 24 C -0.17 -7.50 9.70 30.59 0.30 -7.21 16 25 C 0.06 2.07 9.58 85.23 0.82 2.88 16 26 N -0.34 -11.42 12.58 -57.03 -0.72 -12.13 16 27 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.22 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 34 H 0.13 2.91 8.14 -2.39 -0.02 2.90 16 35 H 0.09 3.31 5.32 -2.38 -0.01 3.30 16 36 H 0.07 1.66 7.91 -2.39 -0.02 1.64 16 37 H 0.06 2.37 4.31 -2.39 -0.01 2.36 16 38 H 0.02 1.03 7.17 -2.38 -0.02 1.01 16 39 H 0.26 13.47 8.32 -92.71 -0.77 12.70 16 40 H 0.06 2.78 8.03 -2.39 -0.02 2.76 16 41 H 0.05 2.71 8.14 -2.38 -0.02 2.69 16 42 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 43 H 0.08 3.34 7.61 -2.39 -0.02 3.32 16 44 H 0.16 5.83 7.52 -2.91 -0.02 5.81 16 Total: -1.00 -75.82 362.44 0.35 -75.47 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.99 Total: 24.05 kcal Atomic # 6 Polarization: -47.78 SS G_CDS: 6.16 Total: -41.62 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -5.35 Total: -93.09 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -2.70 Total: -35.54 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 16 Polarization: 28.80 SS G_CDS: -0.78 Total: 28.02 kcal Total: -75.82 0.35 -75.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602817117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.688 kcal (2) G-P(sol) polarization free energy of solvation -75.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds