Wall clock time and date at job start Tue Mar 31 2020 13:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34949 * 126.03850 * 2 1 4 4 C 1.35320 * 107.74852 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.03986 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.40611 * 339.84044 * 5 4 3 7 7 C 1.53245 * 109.40558 * 99.60769 * 5 4 3 8 8 S 1.82448 * 108.58385 * 182.10474 * 7 5 4 9 9 O 1.42095 * 109.42809 * 64.50298 * 8 7 5 10 10 C 1.81899 * 101.69855 * 308.78342 * 8 7 5 11 11 C 1.53254 * 108.67097 * 51.25398 * 10 8 7 12 12 N 1.46465 * 109.85369 * 297.89468 * 11 10 8 13 13 C 1.46908 * 110.99696 * 197.76810 * 12 11 10 14 14 C 1.53000 * 109.47199 * 71.48581 * 13 12 11 15 15 C 1.50703 * 115.54850 * 287.49672 * 14 13 12 16 16 H 1.08000 * 119.99789 * 143.03845 * 15 14 13 17 17 C 1.37874 * 119.99988 * 323.02961 * 15 14 13 18 18 N 1.31517 * 120.00435 * 338.10667 * 17 15 14 19 19 Si 1.86799 * 120.00031 * 158.10735 * 17 15 14 20 20 H 1.48501 * 109.46920 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47470 * 120.00057 * 19 17 15 22 22 H 1.48498 * 109.47454 * 240.00528 * 19 17 15 23 23 C 1.52997 * 117.49784 * 141.82984 * 14 13 12 24 24 C 1.52998 * 117.49826 * 73.16542 * 14 13 12 25 25 C 1.39867 * 107.91661 * 0.26971 * 4 3 2 26 26 N 1.30843 * 108.20610 * 359.55237 * 25 4 3 27 27 H 1.09003 * 109.47429 * 89.99398 * 1 2 3 28 28 H 1.08999 * 109.47053 * 209.99615 * 1 2 3 29 29 H 1.08996 * 109.46680 * 329.99119 * 1 2 3 30 30 H 1.08003 * 126.12552 * 0.02562 * 3 2 1 31 31 H 1.08996 * 109.63066 * 301.82625 * 7 5 4 32 32 H 1.08998 * 109.63331 * 62.21636 * 7 5 4 33 33 H 1.08995 * 109.63467 * 291.44631 * 10 8 7 34 34 H 1.09003 * 109.62691 * 171.05410 * 10 8 7 35 35 H 1.09001 * 109.40502 * 58.01563 * 11 10 8 36 36 H 1.09001 * 109.40318 * 177.85562 * 11 10 8 37 37 H 1.08995 * 109.47188 * 191.49239 * 13 12 11 38 38 H 1.09000 * 109.46830 * 311.48657 * 13 12 11 39 39 H 0.96999 * 120.00449 * 185.64054 * 18 17 15 40 40 H 1.09007 * 117.49731 * 359.97438 * 23 14 13 41 41 H 1.08997 * 117.50481 * 145.01964 * 23 14 13 42 42 H 1.08998 * 117.49885 * 214.97976 * 24 14 13 43 43 H 1.08999 * 117.49746 * 359.97438 * 24 14 13 44 44 H 1.08001 * 125.90116 * 179.73670 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5438 0.6666 -0.0006 5 6 4.7680 1.5453 -0.0002 6 1 4.4994 2.5407 -0.3538 7 6 5.3226 1.6452 1.4248 8 16 6.7647 2.7628 1.4105 9 8 6.3439 4.0730 1.0564 10 6 7.7619 2.0608 0.0608 11 6 6.8714 1.9036 -1.1766 12 7 5.7803 0.9700 -0.8889 13 6 5.1706 0.4742 -2.1301 14 6 6.1378 -0.4862 -2.8252 15 6 7.3385 0.1554 -3.4715 16 1 8.2961 -0.3434 -3.4467 17 6 7.2145 1.3790 -4.0946 18 7 6.0360 1.7892 -4.5098 19 14 8.7206 2.4544 -4.3492 20 1 9.9169 1.7695 -3.7967 21 1 8.9161 2.6968 -5.8011 22 1 8.5264 3.7513 -3.6525 23 6 5.5408 -1.7176 -3.5094 24 6 6.3257 -1.8718 -2.2042 25 6 3.5347 -0.7321 -0.0072 26 7 2.2891 -1.1328 -0.0008 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3632 0.8899 0.5140 30 1 1.9281 2.1194 0.0004 31 1 4.5564 2.0454 2.0887 32 1 5.6262 0.6569 1.7698 33 1 8.1487 1.0866 0.3597 34 1 8.5916 2.7298 -0.1677 35 1 6.4558 2.8737 -1.4492 36 1 7.4668 1.5191 -2.0047 37 1 4.2440 -0.0497 -1.8958 38 1 4.9558 1.3146 -2.7902 39 1 5.9603 2.6108 -5.0199 40 1 4.4590 -1.8437 -3.4640 41 1 6.0167 -2.0640 -4.4268 42 1 7.3177 -2.3195 -2.2635 43 1 5.7606 -2.0990 -1.3003 44 1 4.4054 -1.3710 -0.0133 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602817119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:17 Heat of formation + Delta-G solvation = 75.995213 kcal Electronic energy + Delta-G solvation = -27102.868341 eV Core-core repulsion = 23570.689018 eV Total energy + Delta-G solvation = -3532.179323 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.32471 -39.67895 -37.37034 -36.67245 -34.64228 -34.06320 -32.86488 -31.18751 -30.23744 -27.86862 -27.47274 -25.95629 -24.27817 -22.91402 -22.49317 -21.80991 -20.89017 -20.60593 -18.53632 -18.13903 -17.67739 -16.79693 -16.66369 -16.33269 -16.19621 -15.91593 -15.76664 -15.20621 -15.16802 -14.91226 -14.53301 -14.47003 -14.06364 -13.79505 -13.64073 -13.44941 -13.31600 -13.06893 -12.97675 -12.82540 -12.64979 -12.37252 -12.33001 -12.17467 -12.07708 -11.91339 -11.61775 -11.10642 -11.06783 -10.63626 -10.45976 -10.29553 -9.98460 -9.46604 -9.11180 -8.85101 -8.16529 -6.10865 0.89176 0.92601 1.27150 1.36086 1.42584 1.65366 1.72330 1.88002 2.31071 2.84311 2.96047 3.13235 3.63064 3.81289 3.93583 4.06307 4.12028 4.22183 4.26920 4.35315 4.40253 4.42141 4.46884 4.59349 4.65789 4.73023 4.74660 4.84915 4.93330 5.01559 5.07056 5.14498 5.19423 5.25707 5.31113 5.45109 5.52074 5.56504 5.65714 5.71282 5.92155 6.11028 6.34960 6.45293 6.50560 6.74837 6.85853 7.36851 8.81405 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010838 B = 0.006570 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.877746 B = 4260.527763 C = 5838.227467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.379 5.379 3 C 0.049 3.951 4 C -0.230 4.230 5 C 0.164 3.836 6 H -0.001 1.001 7 C -0.406 4.406 8 S 1.290 4.710 9 O -0.930 6.930 10 C -0.429 4.429 11 C 0.031 3.969 12 N -0.508 5.508 13 C 0.100 3.900 14 C 0.037 3.963 15 C -0.491 4.491 16 H 0.060 0.940 17 C 0.044 3.956 18 N -0.893 5.893 19 Si 0.906 3.094 20 H -0.247 1.247 21 H -0.284 1.284 22 H -0.289 1.289 23 C -0.212 4.212 24 C -0.162 4.162 25 C 0.075 3.925 26 N -0.326 5.326 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.188 0.812 31 H 0.119 0.881 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.104 0.896 35 H -0.029 1.029 36 H 0.125 0.875 37 H 0.057 0.943 38 H 0.034 0.966 39 H 0.257 0.743 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.471 -2.578 16.211 17.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.162 5.162 3 C -0.098 4.098 4 C -0.243 4.243 5 C 0.053 3.947 6 H 0.017 0.983 7 C -0.544 4.544 8 S 1.491 4.509 9 O -0.926 6.926 10 C -0.567 4.567 11 C -0.097 4.097 12 N -0.232 5.232 13 C -0.027 4.027 14 C 0.036 3.964 15 C -0.528 4.528 16 H 0.078 0.922 17 C -0.157 4.157 18 N -0.530 5.530 19 Si 0.731 3.269 20 H -0.170 1.170 21 H -0.210 1.210 22 H -0.215 1.215 23 C -0.251 4.251 24 C -0.199 4.199 25 C -0.111 4.111 26 N -0.148 5.148 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.131 0.869 30 H 0.205 0.795 31 H 0.137 0.863 32 H 0.174 0.826 33 H 0.177 0.823 34 H 0.122 0.878 35 H -0.011 1.011 36 H 0.143 0.857 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -5.147 -2.940 17.020 18.023 hybrid contribution -0.412 2.328 -3.510 4.232 sum -5.560 -0.612 13.510 14.622 Atomic orbital electron populations 1.22156 0.72028 1.06078 1.04179 1.48696 1.07767 1.02980 1.56724 1.22548 0.90815 0.94275 1.02176 1.19836 0.93633 0.94305 1.16524 1.19670 0.89200 0.92483 0.93328 0.98301 1.27701 1.14080 1.14581 0.98075 1.69021 0.94144 0.81221 1.06524 1.92959 1.82437 1.33028 1.84139 1.27656 1.07641 1.11931 1.09482 1.22576 0.94343 0.91701 1.01056 1.61241 1.09666 1.36389 1.15874 1.21526 0.94856 0.98125 0.88232 1.18903 0.95228 0.85714 0.96531 1.20697 0.94731 1.02593 1.34818 0.92198 1.25423 0.96972 0.98731 0.94605 1.70076 1.24728 1.23362 1.34832 0.86322 0.82842 0.79825 0.77874 1.16982 1.20991 1.21516 1.22886 0.96658 1.09514 0.96015 1.22737 0.99750 1.02649 0.94741 1.23779 0.94953 0.94475 0.97886 1.77277 1.02092 1.09356 1.26106 0.90479 0.88467 0.86855 0.79538 0.86316 0.82604 0.82306 0.87771 1.01101 0.85724 0.92444 0.94767 0.93317 0.92194 0.91804 0.90354 0.89086 0.79598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.56 11.47 127.77 1.47 3.03 16 2 N -0.38 -10.27 4.01 -369.56 -1.48 -11.75 16 3 C 0.05 1.41 11.40 83.54 0.95 2.36 16 4 C -0.23 -7.48 3.65 -20.14 -0.07 -7.56 16 5 C 0.16 5.71 2.33 44.33 0.10 5.81 16 6 H 0.00 -0.04 7.91 -2.39 -0.02 -0.06 16 7 C -0.41 -9.91 5.95 72.06 0.43 -9.49 16 8 S 1.29 32.28 13.86 -56.49 -0.78 31.50 16 9 O -0.93 -37.30 18.14 -148.98 -2.70 -40.00 16 10 C -0.43 -12.95 6.66 72.07 0.48 -12.47 16 11 C 0.03 1.34 4.84 86.47 0.42 1.76 16 12 N -0.51 -20.04 4.13 -876.62 -3.62 -23.65 16 13 C 0.10 4.64 4.24 86.30 0.37 5.01 16 14 C 0.04 1.76 1.83 -52.93 -0.10 1.66 16 15 C -0.49 -25.52 6.97 25.60 0.18 -25.34 16 16 H 0.06 3.10 7.91 -2.91 -0.02 3.08 16 17 C 0.04 2.36 3.63 84.65 0.31 2.66 16 18 N -0.89 -50.98 11.20 21.45 0.24 -50.74 16 19 Si 0.91 42.38 28.59 68.60 1.96 44.34 16 20 H -0.25 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 23 C -0.21 -9.67 9.89 30.62 0.30 -9.37 16 24 C -0.16 -6.51 9.96 30.62 0.30 -6.21 16 25 C 0.07 2.43 9.61 85.23 0.82 3.25 16 26 N -0.33 -10.55 12.58 -57.02 -0.72 -11.27 16 27 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.19 4.39 8.06 -2.91 -0.02 4.37 16 31 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.16 2.89 8.14 -2.39 -0.02 2.87 16 33 H 0.16 3.71 8.14 -2.39 -0.02 3.69 16 34 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 35 H -0.03 -1.51 7.91 -2.39 -0.02 -1.53 16 36 H 0.13 5.95 2.33 -2.39 -0.01 5.95 16 37 H 0.06 2.60 4.46 -2.39 -0.01 2.58 16 38 H 0.03 1.91 5.56 -2.39 -0.01 1.90 16 39 H 0.26 14.35 8.32 -92.71 -0.77 13.58 16 40 H 0.06 2.69 8.14 -2.38 -0.02 2.67 16 41 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 42 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 43 H 0.09 3.25 6.66 -2.39 -0.02 3.23 16 44 H 0.19 5.82 6.57 -2.91 -0.02 5.80 16 Total: -1.00 -78.72 353.36 -0.14 -78.86 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 1.01 Total: 27.59 kcal Atomic # 6 Polarization: -50.84 SS G_CDS: 5.96 Total: -44.88 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -5.58 Total: -97.41 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -2.70 Total: -40.00 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.96 Total: 44.34 kcal Atomic # 16 Polarization: 32.28 SS G_CDS: -0.78 Total: 31.50 kcal Total: -78.72 -0.14 -78.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602817119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.855 kcal (2) G-P(sol) polarization free energy of solvation -78.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds