Wall clock time and date at job start Tue Mar 31 2020 14:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35871 * 126.29103 * 2 1 4 4 C 1.41255 * 104.19457 * 179.97438 * 3 2 1 5 5 N 1.34154 * 127.15141 * 180.15044 * 4 3 2 6 6 C 1.32741 * 119.99946 * 180.24378 * 5 4 3 7 7 O 1.21863 * 120.00268 * 359.97438 * 6 5 4 8 8 C 1.49146 * 120.00145 * 180.02562 * 6 5 4 9 9 O 1.21400 * 119.99912 * 355.05808 * 8 6 5 10 10 N 1.34774 * 120.00218 * 175.06340 * 8 6 5 11 11 C 1.46502 * 120.00095 * 2.68655 * 10 8 6 12 12 C 1.50703 * 109.47135 * 82.54561 * 11 10 8 13 13 H 1.08003 * 119.99549 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00343 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99998 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00166 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47224 * 89.99849 * 16 14 12 18 18 H 1.48506 * 109.47192 * 209.99888 * 16 14 12 19 19 H 1.48503 * 109.47278 * 329.99649 * 16 14 12 20 20 C 1.46493 * 119.99909 * 182.69322 * 10 8 6 21 21 C 1.53001 * 109.47406 * 90.50187 * 20 10 8 22 22 C 1.52993 * 109.47172 * 55.18779 * 21 20 10 23 23 C 1.53004 * 109.47207 * 175.19148 * 21 20 10 24 24 C 1.53002 * 109.46824 * 295.18584 * 21 20 10 25 25 N 1.35079 * 105.69853 * 0.33031 * 4 3 2 26 26 H 0.97002 * 124.70129 * 179.78074 * 25 4 3 27 27 O 1.20978 * 110.60527 * 359.78676 * 25 4 3 28 28 H 1.08998 * 109.47309 * 179.71463 * 1 2 3 29 29 H 1.08994 * 109.47408 * 299.72134 * 1 2 3 30 30 H 1.08997 * 109.46463 * 59.72130 * 1 2 3 31 31 H 1.08000 * 127.90405 * 0.02692 * 3 2 1 32 32 H 1.08994 * 109.47154 * 202.54663 * 11 10 8 33 33 H 1.09002 * 109.47061 * 322.55195 * 11 10 8 34 34 H 0.97001 * 120.00039 * 179.97438 * 15 14 12 35 35 H 1.09008 * 109.46964 * 210.50196 * 20 10 8 36 36 H 1.09005 * 109.47245 * 330.49428 * 20 10 8 37 37 H 1.09000 * 109.47350 * 60.00514 * 22 21 20 38 38 H 1.09004 * 109.47224 * 180.02562 * 22 21 20 39 39 H 1.09005 * 109.47041 * 299.99934 * 22 21 20 40 40 H 1.08997 * 109.47293 * 59.99502 * 23 21 20 41 41 H 1.08994 * 109.46898 * 179.97438 * 23 21 20 42 42 H 1.09001 * 109.46881 * 299.99849 * 23 21 20 43 43 H 1.09004 * 109.46769 * 68.64313 * 24 21 20 44 44 H 1.09000 * 109.47246 * 188.64702 * 24 21 20 45 45 H 1.08998 * 109.47289 * 308.64537 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3112 1.0951 0.0000 4 6 3.6200 0.5638 0.0006 5 7 4.7729 1.2498 0.0037 6 6 5.9311 0.6012 -0.0011 7 8 5.9472 -0.6173 -0.0077 8 6 7.2129 1.3638 0.0029 9 8 7.1989 2.5749 -0.0802 10 7 8.3867 0.7084 0.0985 11 6 8.4069 -0.7559 0.1393 12 6 8.3233 -1.2987 -1.2641 13 1 8.2609 -0.6207 -2.1025 14 6 8.3253 -2.6608 -1.4777 15 7 8.4008 -3.4864 -0.4568 16 14 8.2224 -3.3335 -3.2173 17 1 9.5923 -3.4957 -3.7672 18 1 7.5373 -4.6510 -3.1989 19 1 7.4558 -2.3888 -4.0689 20 6 9.6423 1.4603 0.1619 21 6 9.9903 1.7498 1.6234 22 6 10.0294 0.4370 2.4081 23 6 11.3594 2.4290 1.6968 24 6 8.9300 2.6733 2.2267 25 7 3.4695 -0.7786 -0.0066 26 1 4.2005 -1.4162 -0.0110 27 8 2.2968 -1.0755 -0.0068 28 1 -0.3634 -1.0276 -0.0051 29 1 -0.3634 0.5095 0.8924 30 1 -0.3632 0.5182 -0.8875 31 1 2.0171 2.1343 0.0004 32 1 9.3326 -1.0937 0.6049 33 1 7.5564 -1.1150 0.7189 34 1 8.4019 -4.4447 -0.6071 35 1 10.4407 0.8732 -0.2923 36 1 9.5305 2.4005 -0.3782 37 1 10.7848 -0.2208 1.9783 38 1 10.2769 0.6434 3.4494 39 1 9.0540 -0.0467 2.3558 40 1 11.3315 3.3642 1.1378 41 1 11.6070 2.6356 2.7380 42 1 12.1147 1.7711 1.2670 43 1 7.9867 2.1342 2.3154 44 1 9.2544 3.0029 3.2137 45 1 8.7934 3.5406 1.5808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609191976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:46 Heat of formation + Delta-G solvation = 38.977093 kcal Electronic energy + Delta-G solvation = -28828.072867 eV Core-core repulsion = 24851.535447 eV Total energy + Delta-G solvation = -3976.537420 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.42206 -39.87009 -38.25715 -36.40070 -35.16117 -34.47011 -33.82547 -32.15601 -31.01213 -28.95632 -27.61012 -26.86189 -26.72949 -26.24665 -24.11017 -23.23341 -22.55941 -21.06671 -19.73684 -18.41400 -18.16162 -17.71427 -16.60729 -16.34297 -15.91060 -15.21913 -14.92086 -14.78232 -14.37998 -14.10903 -14.09752 -13.94205 -13.86280 -13.73412 -13.41310 -12.80193 -12.61990 -12.54080 -12.27558 -11.98021 -11.78286 -11.46060 -11.33369 -11.20128 -11.03059 -10.98312 -10.83454 -10.66770 -10.33998 -10.29513 -10.13828 -10.02740 -9.92149 -9.52331 -9.21166 -8.51397 -8.04731 -7.93208 -7.48483 -5.96795 -3.97226 0.70890 1.79560 1.99065 3.12187 3.29971 3.30330 3.36170 3.41389 3.60360 4.18353 4.45349 4.54111 4.60489 4.86288 4.93839 4.99253 5.23004 5.26967 5.31043 5.38070 5.41314 5.47285 5.71596 5.94102 5.95264 6.00277 6.04968 6.19227 6.26841 6.27416 6.38185 6.47592 6.57359 6.62804 6.65183 6.82806 6.88633 7.00074 7.44059 7.64930 7.83615 7.87592 7.97437 8.33017 8.37577 8.77090 9.03183 9.21365 9.63892 11.11339 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009586 B = 0.005189 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.299679 B = 5394.835241 C = 7625.701845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.067 3.933 3 C -0.238 4.238 4 C 0.415 3.585 5 N -0.604 5.604 6 C 0.466 3.534 7 O -0.513 6.513 8 C 0.524 3.476 9 O -0.538 6.538 10 N -0.569 5.569 11 C 0.226 3.774 12 C -0.506 4.506 13 H 0.051 0.949 14 C 0.065 3.935 15 N -0.894 5.894 16 Si 0.888 3.112 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.127 3.873 21 C -0.085 4.085 22 C -0.139 4.139 23 C -0.135 4.135 24 C -0.129 4.129 25 N -0.505 5.505 26 H 0.479 0.521 27 O 0.002 5.998 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.190 0.810 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.259 0.741 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.042 0.958 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.748 6.698 4.589 15.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.008 3.992 3 C -0.261 4.261 4 C 0.165 3.835 5 N -0.370 5.370 6 C 0.249 3.751 7 O -0.390 6.390 8 C 0.307 3.693 9 O -0.416 6.416 10 N -0.300 5.300 11 C 0.107 3.893 12 C -0.546 4.546 13 H 0.069 0.931 14 C -0.136 4.136 15 N -0.534 5.534 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.202 1.202 20 C 0.003 3.997 21 C -0.086 4.086 22 C -0.196 4.196 23 C -0.193 4.193 24 C -0.186 4.186 25 N -0.184 5.184 26 H 0.345 0.655 27 O -0.009 6.009 28 H 0.106 0.894 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.208 0.792 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.410 6.703 4.583 14.830 hybrid contribution 0.471 -1.498 -1.102 1.918 sum -11.939 5.205 3.481 13.481 Atomic orbital electron populations 1.20565 0.82362 1.05381 1.05221 1.23969 0.95281 0.83806 0.96190 1.21675 0.88470 1.01155 1.14801 1.21805 0.96393 0.79057 0.86248 1.70092 0.94673 1.32646 1.39576 1.21178 0.89811 0.86624 0.77466 1.90617 1.88536 1.15993 1.43877 1.19269 0.84502 0.86973 0.78594 1.90617 1.87277 1.13677 1.50040 1.48188 1.03863 1.10169 1.67800 1.20019 0.99404 0.71684 0.98169 1.21344 1.49427 0.91498 0.92284 0.93070 1.24790 0.95503 0.96747 0.96535 1.69932 1.51188 1.02656 1.29600 0.86659 0.78112 0.78198 0.85362 1.20691 1.21330 1.20233 1.21475 0.86360 0.96966 0.94861 1.20971 0.95384 0.95991 0.96302 1.21946 1.02872 0.96403 0.98424 1.21781 0.96017 1.00188 1.01284 1.21801 0.98084 0.99404 0.99354 1.44783 0.96586 1.11034 1.65984 0.65451 1.83930 1.06495 1.32034 1.78455 0.89429 0.87905 0.87907 0.79232 0.94842 0.91377 0.93124 0.90417 0.90772 0.92510 0.93738 0.91767 0.92792 0.92892 0.92664 0.93200 0.93918 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.26 10.44 36.01 0.38 0.12 16 2 C 0.07 0.58 7.44 -35.15 -0.26 0.32 16 3 C -0.24 -2.67 11.08 -39.28 -0.44 -3.11 16 4 C 0.42 6.94 7.77 -156.37 -1.22 5.73 16 5 N -0.60 -12.72 10.34 -12.35 -0.13 -12.85 16 6 C 0.47 11.03 7.63 -12.63 -0.10 10.94 16 7 O -0.51 -12.64 9.71 5.04 0.05 -12.59 16 8 C 0.52 12.65 6.29 -11.73 -0.07 12.58 16 9 O -0.54 -13.26 14.80 5.45 0.08 -13.18 16 10 N -0.57 -13.22 2.00 -175.68 -0.35 -13.57 16 11 C 0.23 5.87 3.31 -5.19 -0.02 5.85 16 12 C -0.51 -14.38 8.18 -34.44 -0.28 -14.67 16 13 H 0.05 1.51 7.81 -52.48 -0.41 1.10 16 14 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 15 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 16 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 C 0.13 2.52 4.57 -4.04 -0.02 2.50 16 21 C -0.09 -1.45 0.85 -154.51 -0.13 -1.58 16 22 C -0.14 -2.44 7.13 37.15 0.26 -2.17 16 23 C -0.13 -1.87 8.46 37.16 0.31 -1.55 16 24 C -0.13 -2.25 7.14 37.16 0.27 -1.98 16 25 N -0.51 -7.86 6.47 31.11 0.20 -7.66 16 26 H 0.48 8.48 6.28 -40.82 -0.26 8.23 16 27 O 0.00 0.02 11.14 18.72 0.21 0.23 16 28 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.19 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.03 0.89 6.31 -51.93 -0.33 0.56 16 33 H 0.07 1.92 5.49 -51.93 -0.29 1.63 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.08 1.52 8.08 -51.92 -0.42 1.11 16 36 H 0.07 1.48 7.36 -51.93 -0.38 1.10 16 37 H 0.06 1.00 7.82 -51.93 -0.41 0.59 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 1.28 6.17 -51.93 -0.32 0.96 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.98 6.88 -51.93 -0.36 0.62 16 44 H 0.04 0.64 8.13 -51.93 -0.42 0.22 16 45 H 0.06 1.12 7.56 -51.93 -0.39 0.72 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -35.41 365.58 -6.62 -42.03 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.50 Total: 5.67 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: -1.41 Total: 14.74 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.46 Total: -59.47 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: 0.34 Total: -25.54 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.41 -6.62 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609191976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.004 kcal (2) G-P(sol) polarization free energy of solvation -35.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds