Wall clock time and date at job start Tue Mar 31 2020 13:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 120.00249 * 2 1 4 4 C 1.50697 * 109.47184 * 270.00019 * 3 2 1 5 5 C 1.33388 * 125.20606 * 89.99778 * 4 3 2 6 6 C 1.38425 * 114.92378 * 179.97438 * 5 4 3 7 7 C 1.33393 * 114.91944 * 0.02562 * 6 5 4 8 8 S 1.75889 * 125.19956 * 269.69190 * 4 3 2 9 9 C 1.34778 * 120.00206 * 179.97438 * 2 1 3 10 10 O 1.21585 * 120.00569 * 180.02562 * 9 2 1 11 11 N 1.34781 * 119.99776 * 0.02562 * 9 2 1 12 12 C 1.46500 * 119.99994 * 179.97438 * 11 9 2 13 13 C 1.53076 * 109.43981 * 84.79590 * 12 11 9 14 14 C 1.53183 * 109.29478 * 181.23571 * 13 12 11 15 15 N 1.46930 * 108.89468 * 305.57480 * 14 13 12 16 16 C 1.36937 * 120.63259 * 233.51494 * 15 14 13 17 17 H 1.08000 * 119.99761 * 151.83401 * 16 15 14 18 18 C 1.38806 * 120.00219 * 331.83653 * 16 15 14 19 19 N 1.31624 * 120.00191 * 343.07619 * 18 16 15 20 20 Si 1.86800 * 120.00146 * 163.07294 * 18 16 15 21 21 H 1.48506 * 109.46812 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47258 * 119.99807 * 20 18 16 23 23 H 1.48499 * 109.47344 * 240.00342 * 20 18 16 24 24 C 1.46925 * 118.73328 * 53.53726 * 15 14 13 25 25 C 1.53033 * 109.45902 * 204.99610 * 12 11 9 26 26 H 1.08998 * 109.47389 * 270.00078 * 1 2 3 27 27 H 1.08997 * 109.46802 * 30.00017 * 1 2 3 28 28 H 1.09001 * 109.46841 * 149.99845 * 1 2 3 29 29 H 1.09000 * 109.46718 * 29.99894 * 3 2 1 30 30 H 1.09005 * 109.47068 * 149.99808 * 3 2 1 31 31 H 1.08000 * 122.53847 * 359.95690 * 5 4 3 32 32 H 1.07990 * 122.53956 * 180.02562 * 6 5 4 33 33 H 1.07992 * 125.20173 * 180.02562 * 7 6 5 34 34 H 0.97007 * 119.99982 * 359.97438 * 11 9 2 35 35 H 1.08994 * 109.45870 * 324.97548 * 12 11 9 36 36 H 1.09005 * 109.39190 * 61.35477 * 13 12 11 37 37 H 1.09004 * 109.62337 * 301.25270 * 13 12 11 38 38 H 1.09005 * 109.58619 * 185.72200 * 14 13 12 39 39 H 1.08998 * 109.58733 * 65.43770 * 14 13 12 40 40 H 0.96995 * 120.00379 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.58688 * 66.18006 * 24 15 14 42 42 H 1.08996 * 109.58570 * 186.45714 * 24 15 14 43 43 H 1.09003 * 109.49897 * 58.68032 * 25 12 11 44 44 H 1.09000 * 109.52987 * 298.59684 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 6 1.6330 2.4707 -2.1458 6 6 2.0743 2.7408 -3.4297 7 6 3.2482 2.1927 -3.7476 8 16 3.8660 1.2841 -2.3741 9 6 2.1389 -1.1672 0.0005 10 8 3.3548 -1.1673 0.0010 11 7 1.4650 -2.3344 0.0005 12 6 2.1975 -3.6032 0.0005 13 6 2.5656 -3.9789 1.4381 14 6 3.3580 -5.2899 1.4315 15 7 2.5804 -6.3122 0.7180 16 6 2.3080 -7.5184 1.3063 17 1 1.4177 -8.0644 1.0313 18 6 3.1759 -8.0391 2.2561 19 7 4.4009 -7.5682 2.3567 20 14 2.6056 -9.4082 3.3917 21 1 1.1968 -9.7574 3.0774 22 1 3.4661 -10.6029 3.1980 23 1 2.7004 -8.9533 4.8021 24 6 2.1012 -6.0159 -0.6389 25 6 1.3198 -4.6985 -0.6092 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6084 2.0283 0.5138 30 1 3.1500 1.1383 0.5139 31 1 0.6989 2.8518 -1.7604 32 1 1.5109 3.3491 -4.1216 33 1 3.7456 2.2955 -4.7006 34 1 0.4949 -2.3344 0.0005 35 1 3.1079 -3.4968 -0.5893 36 1 1.6549 -4.1071 2.0232 37 1 3.1734 -3.1886 1.8788 38 1 3.5350 -5.6150 2.4568 39 1 4.3119 -5.1378 0.9265 40 1 5.0076 -7.9324 3.0201 41 1 2.9515 -5.9211 -1.3142 42 1 1.4511 -6.8212 -0.9808 43 1 1.0409 -4.4180 -1.6249 44 1 0.4204 -4.8227 -0.0061 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609336532.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:14 Heat of formation + Delta-G solvation = 36.357928 kcal Electronic energy + Delta-G solvation = -25234.362889 eV Core-core repulsion = 21700.464764 eV Total energy + Delta-G solvation = -3533.898125 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.19639 -38.14345 -37.39755 -35.45579 -34.42457 -32.23453 -30.92659 -29.92594 -29.23926 -27.42746 -25.92442 -24.69873 -23.26356 -22.19096 -21.78872 -19.91237 -19.60685 -19.14359 -17.82695 -17.44741 -16.73489 -16.29513 -15.76516 -15.30802 -14.83111 -14.44343 -14.11659 -13.77854 -13.50802 -13.45015 -13.17774 -13.03802 -12.98979 -12.85632 -12.65199 -12.56166 -12.44339 -12.25354 -11.58191 -11.44400 -11.08979 -10.88973 -10.72129 -10.71851 -10.34129 -10.18912 -10.05857 -9.94104 -9.72417 -9.52902 -8.98098 -8.83059 -8.57299 -8.53467 -8.35046 -6.65378 -5.75893 -3.19061 0.81005 1.56332 1.97304 2.45176 2.88890 3.37219 3.38700 3.46271 3.48373 4.05528 4.51403 4.62367 4.83515 4.89159 4.92438 5.14967 5.32105 5.34804 5.35393 5.42114 5.44022 5.49861 5.51170 5.69318 5.88117 5.90320 6.10187 6.12929 6.22266 6.27766 6.35135 6.42666 6.49826 6.63776 6.69030 6.80377 6.91518 6.98090 7.09401 7.42835 7.72548 7.82387 8.08624 8.47863 8.76894 9.23727 9.87078 10.44042 11.32583 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.027765 B = 0.002609 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.235962 B =10728.751401 C =10922.780639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.634 5.634 3 C 0.204 3.796 4 C -0.196 4.196 5 C -0.134 4.134 6 C -0.141 4.141 7 C -0.227 4.227 8 S 0.147 5.853 9 C 0.703 3.297 10 O -0.581 6.581 11 N -0.738 5.738 12 C 0.168 3.832 13 C -0.145 4.145 14 C 0.174 3.826 15 N -0.593 5.593 16 C -0.253 4.253 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.149 3.851 25 C -0.138 4.138 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.160 0.840 34 H 0.390 0.610 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.020 0.980 40 H 0.253 0.747 41 H 0.020 0.980 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.866 21.875 -8.647 25.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.372 5.372 3 C 0.078 3.922 4 C -0.316 4.316 5 C -0.166 4.166 6 C -0.172 4.172 7 C -0.364 4.364 8 S 0.412 5.588 9 C 0.404 3.596 10 O -0.458 6.458 11 N -0.393 5.393 12 C 0.064 3.936 13 C -0.186 4.186 14 C 0.048 3.952 15 N -0.316 5.316 16 C -0.383 4.383 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.545 5.545 20 Si 0.731 3.269 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.022 3.978 25 C -0.178 4.178 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.178 0.822 34 H 0.224 0.776 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.039 0.961 40 H 0.064 0.936 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.509 20.901 -8.262 23.398 hybrid contribution -2.117 0.239 0.178 2.138 sum -8.626 21.140 -8.084 24.221 Atomic orbital electron populations 1.21691 0.79976 1.02919 1.01635 1.47093 1.06182 1.04636 1.79303 1.19630 0.98573 0.84368 0.89580 1.25073 0.99484 1.05067 1.01963 1.20068 1.00964 1.01342 0.94248 1.20102 0.96893 1.03196 0.97025 1.25821 1.01438 1.05421 1.03701 1.84910 1.20879 1.49170 1.03885 1.15959 0.85512 0.80324 0.77785 1.90925 1.11320 1.85997 1.57525 1.45668 1.09489 1.05048 1.79053 1.20913 0.94867 0.79795 0.97998 1.22569 1.00896 1.00191 0.94936 1.20747 0.90980 0.84156 0.99348 1.44114 1.63016 1.13675 1.10750 1.19207 1.03184 0.96653 1.19234 0.91640 1.25068 0.94636 0.98304 1.01671 1.70048 1.04140 1.44474 1.35823 0.86240 0.78102 0.81632 0.80880 1.20287 1.21737 1.21585 1.20829 0.95601 0.93039 0.88346 1.22331 0.99331 0.97011 0.99134 0.92531 0.91060 0.91484 0.88855 0.88614 0.84703 0.84729 0.82215 0.77578 0.90104 0.92913 0.92800 0.89365 0.96144 0.93645 0.96199 0.92376 0.92744 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 10.20 59.85 0.61 1.23 16 2 N -0.63 -7.31 2.86 -188.74 -0.54 -7.85 16 3 C 0.20 2.12 5.90 -5.19 -0.03 2.09 16 4 C -0.20 -2.11 6.09 -36.00 -0.22 -2.33 16 5 C -0.13 -1.22 10.05 -41.21 -0.41 -1.63 16 6 C -0.14 -1.26 10.18 -41.21 -0.42 -1.68 16 7 C -0.23 -2.21 11.23 29.04 0.33 -1.88 16 8 S 0.15 1.76 23.33 -107.50 -2.51 -0.74 16 9 C 0.70 10.97 8.24 -86.91 -0.72 10.25 16 10 O -0.58 -11.30 15.58 5.29 0.08 -11.22 16 11 N -0.74 -10.88 4.94 -58.62 -0.29 -11.17 16 12 C 0.17 3.01 2.41 -67.87 -0.16 2.85 16 13 C -0.15 -2.97 5.66 -26.60 -0.15 -3.12 16 14 C 0.17 4.30 5.30 -3.71 -0.02 4.28 16 15 N -0.59 -14.96 3.00 -172.33 -0.52 -15.47 16 16 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 17 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 18 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 19 N -0.90 -26.55 11.20 55.49 0.62 -25.93 16 20 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C 0.15 3.11 6.52 -3.71 -0.02 3.08 16 25 C -0.14 -2.34 5.55 -26.62 -0.15 -2.49 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.41 8.07 -51.93 -0.42 0.00 16 28 H 0.07 0.49 6.36 -51.93 -0.33 0.16 16 29 H 0.09 0.68 8.07 -51.93 -0.42 0.26 16 30 H 0.10 1.17 7.42 -51.93 -0.39 0.78 16 31 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 33 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.39 4.62 6.33 -40.82 -0.26 4.36 16 35 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 368.83 15.07 5.56 5.56 Total: -1.00 -32.98 368.83 -10.93 -43.91 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.71 Total: 2.65 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.60 Total: 3.52 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.72 Total: -60.42 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.51 Total: -0.74 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.98 -10.93 -43.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609336532.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.270 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds