Wall clock time and date at job start Tue Mar 31 2020 13:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00426 * 2 1 4 4 C 1.50698 * 109.46835 * 269.99750 * 3 2 1 5 5 C 1.38428 * 122.53466 * 90.00397 * 4 3 2 6 6 C 1.33388 * 114.91833 * 179.97438 * 5 4 3 7 7 S 1.75887 * 109.59431 * 359.97438 * 6 5 4 8 8 C 1.33382 * 122.53868 * 269.97374 * 4 3 2 9 9 C 1.34782 * 119.99694 * 179.97438 * 2 1 3 10 10 O 1.21587 * 120.00110 * 179.97438 * 9 2 1 11 11 N 1.34775 * 119.99877 * 0.02562 * 9 2 1 12 12 C 1.46503 * 120.00030 * 179.97438 * 11 9 2 13 13 C 1.53039 * 109.46015 * 275.02487 * 12 11 9 14 14 C 1.53188 * 109.31331 * 178.59867 * 13 12 11 15 15 N 1.46928 * 108.76431 * 54.65733 * 14 13 12 16 16 C 1.36941 * 120.62971 * 126.40252 * 15 14 13 17 17 H 1.07993 * 120.00008 * 331.82913 * 16 15 14 18 18 C 1.38808 * 119.99738 * 151.82212 * 16 15 14 19 19 N 1.31624 * 120.00046 * 343.08289 * 18 16 15 20 20 Si 1.86804 * 120.00200 * 163.08113 * 18 16 15 21 21 H 1.48502 * 109.46931 * 59.99732 * 20 18 16 22 22 H 1.48492 * 109.47432 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46927 * 300.00249 * 20 18 16 24 24 C 1.46921 * 118.73923 * 306.38406 * 15 14 13 25 25 C 1.53043 * 109.46170 * 154.97028 * 12 11 9 26 26 H 1.09005 * 109.46671 * 89.99708 * 1 2 3 27 27 H 1.08996 * 109.47409 * 209.99929 * 1 2 3 28 28 H 1.09003 * 109.46824 * 330.00054 * 1 2 3 29 29 H 1.09001 * 109.46913 * 149.99776 * 3 2 1 30 30 H 1.09001 * 109.46585 * 29.99961 * 3 2 1 31 31 H 1.07994 * 122.54318 * 359.70163 * 5 4 3 32 32 H 1.07994 * 125.20467 * 179.97438 * 6 5 4 33 33 H 1.07993 * 125.20780 * 0.05732 * 8 4 3 34 34 H 0.97006 * 120.00092 * 359.97438 * 11 9 2 35 35 H 1.08997 * 109.46031 * 35.00075 * 12 11 9 36 36 H 1.09000 * 109.49798 * 298.56881 * 13 12 11 37 37 H 1.09003 * 109.49402 * 58.66135 * 13 12 11 38 38 H 1.09001 * 109.60288 * 294.86823 * 14 13 12 39 39 H 1.08997 * 109.70492 * 174.50653 * 14 13 12 40 40 H 0.97001 * 119.99993 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.58916 * 293.82042 * 24 15 14 42 42 H 1.08997 * 109.70438 * 173.46814 * 24 15 14 43 43 H 1.08997 * 109.49676 * 301.34006 * 25 12 11 44 44 H 1.09002 * 109.49539 * 61.43321 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 -1.4208 5 6 1.5623 2.5021 -2.1228 6 6 1.9361 2.7957 -3.3691 7 16 3.4875 2.0416 -3.7128 8 6 3.5424 1.3488 -2.0970 9 6 2.1389 -1.1673 0.0005 10 8 3.3547 -1.1674 0.0001 11 7 1.4649 -2.3344 0.0005 12 6 2.1973 -3.6032 0.0005 13 6 2.5617 -3.9816 -1.4369 14 6 3.3575 -5.2905 -1.4300 15 7 2.5802 -6.3125 -0.7159 16 6 2.3076 -7.5190 -1.3037 17 1 2.2369 -7.5921 -2.3788 18 6 2.1223 -8.6479 -0.5175 19 7 2.5259 -8.6509 0.7353 20 14 1.3001 -10.1628 -1.2375 21 1 2.0942 -10.6557 -2.3916 22 1 1.2216 -11.2233 -0.2011 23 1 -0.0697 -9.8136 -1.6924 24 6 2.1013 -6.0157 0.6410 25 6 1.3199 -4.6985 0.6110 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 3.1500 1.1382 0.5139 30 1 1.6085 2.0283 0.5138 31 1 0.6362 2.8567 -1.6953 32 1 1.3724 3.4034 -4.0613 33 1 4.3396 0.7306 -1.7115 34 1 0.4948 -2.3344 0.0005 35 1 3.1080 -3.4969 0.5900 36 1 1.6506 -4.1125 -2.0207 37 1 3.1670 -3.1903 -1.8790 38 1 4.3105 -5.1364 -0.9239 39 1 3.5365 -5.6172 -2.4544 40 1 2.3960 -9.4397 1.2848 41 1 2.9518 -5.9207 1.3161 42 1 1.4500 -6.8193 0.9849 43 1 1.0412 -4.4175 1.6266 44 1 0.4206 -4.8226 0.0077 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609336579.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:20 Heat of formation + Delta-G solvation = 35.690652 kcal Electronic energy + Delta-G solvation = -25339.194418 eV Core-core repulsion = 21805.267358 eV Total energy + Delta-G solvation = -3533.927060 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.27336 -38.40471 -37.31904 -35.21632 -34.38964 -32.10184 -30.54497 -29.96910 -29.23467 -27.57457 -26.35305 -24.78474 -23.13044 -22.19634 -21.77750 -19.91234 -19.43748 -18.82315 -18.13800 -17.45937 -16.71687 -16.37288 -15.89803 -15.02194 -14.79000 -14.52693 -14.11421 -13.66418 -13.56834 -13.40977 -13.13899 -13.08475 -12.99090 -12.89941 -12.63270 -12.51877 -12.36906 -12.22375 -11.69652 -11.41940 -11.08412 -10.95402 -10.79280 -10.69921 -10.46819 -10.24936 -10.01338 -9.98171 -9.72774 -9.51480 -8.97161 -8.87710 -8.60346 -8.50488 -8.38868 -6.66157 -5.77847 -3.19952 0.86859 1.52526 1.85110 2.31298 3.00504 3.38305 3.39349 3.44890 3.46140 4.07812 4.50973 4.69463 4.85286 4.92244 4.99077 5.17918 5.29042 5.36524 5.43460 5.45596 5.49567 5.54144 5.56268 5.65630 5.85211 5.93757 6.11031 6.21083 6.27323 6.32595 6.39112 6.40567 6.55052 6.62484 6.64566 6.83574 6.92099 7.02286 7.10896 7.34366 7.63815 7.80662 8.10538 8.46570 8.77399 9.22691 9.85946 10.43281 11.31088 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022420 B = 0.002682 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.603958 B =10435.682782 C =10992.564917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.633 5.633 3 C 0.195 3.805 4 C -0.133 4.133 5 C -0.122 4.122 6 C -0.221 4.221 7 S 0.088 5.912 8 C -0.173 4.173 9 C 0.705 3.295 10 O -0.588 6.588 11 N -0.738 5.738 12 C 0.168 3.832 13 C -0.138 4.138 14 C 0.148 3.852 15 N -0.593 5.593 16 C -0.252 4.252 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.904 5.904 20 Si 0.903 3.097 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.175 3.825 25 C -0.146 4.146 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.137 0.863 32 H 0.161 0.839 33 H 0.170 0.830 34 H 0.390 0.610 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.020 0.980 39 H 0.055 0.945 40 H 0.254 0.746 41 H 0.021 0.979 42 H 0.091 0.909 43 H 0.053 0.947 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.425 24.098 -2.727 24.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.371 5.371 3 C 0.069 3.931 4 C -0.146 4.146 5 C -0.153 4.153 6 C -0.357 4.357 7 S 0.351 5.649 8 C -0.309 4.309 9 C 0.407 3.593 10 O -0.466 6.466 11 N -0.393 5.393 12 C 0.064 3.936 13 C -0.178 4.178 14 C 0.021 3.979 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.733 3.267 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.049 3.951 25 C -0.186 4.186 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.154 0.846 32 H 0.179 0.821 33 H 0.187 0.813 34 H 0.225 0.775 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.109 0.891 43 H 0.072 0.928 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.565 23.878 -3.870 24.451 hybrid contribution -2.003 -0.717 0.727 2.248 sum -5.568 23.162 -3.143 24.028 Atomic orbital electron populations 1.21697 0.80111 1.02799 1.01620 1.47069 1.06106 1.04785 1.79099 1.19861 0.98262 0.83792 0.91177 1.19342 0.94965 1.01165 0.99176 1.20038 1.00794 1.00376 0.94055 1.25539 1.00811 1.08452 1.00862 1.84355 1.18699 1.47320 1.14534 1.25743 1.03464 1.05326 0.96388 1.15938 0.85448 0.80324 0.77637 1.90883 1.11501 1.86145 1.58027 1.45695 1.09573 1.05039 1.78982 1.20904 0.95305 0.80129 0.97228 1.22373 1.00663 0.98875 0.95923 1.20873 0.92631 0.87853 0.96537 1.44085 1.59774 1.13186 1.14499 1.19155 1.42619 0.84874 0.91543 0.91716 1.25051 1.00690 0.97292 0.96623 1.70020 1.48041 1.29194 1.07564 0.86364 0.79755 0.82542 0.78076 1.20886 1.21647 1.21074 1.20725 0.96013 0.92077 0.86304 1.22543 0.99471 0.97646 0.98952 0.92901 0.91405 0.91004 0.88924 0.89856 0.84555 0.82121 0.81269 0.77484 0.90102 0.92577 0.92786 0.96195 0.92660 0.93563 0.96114 0.89078 0.92825 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 10.25 59.85 0.61 1.24 16 2 N -0.63 -7.16 2.86 -188.74 -0.54 -7.70 16 3 C 0.19 1.95 5.70 -5.19 -0.03 1.92 16 4 C -0.13 -1.41 5.38 -106.25 -0.57 -1.98 16 5 C -0.12 -1.09 9.98 -41.21 -0.41 -1.50 16 6 C -0.22 -1.95 11.23 29.04 0.33 -1.62 16 7 S 0.09 0.88 23.34 -107.50 -2.51 -1.63 16 8 C -0.17 -2.03 10.98 29.04 0.32 -1.71 16 9 C 0.71 10.79 8.24 -86.91 -0.72 10.08 16 10 O -0.59 -11.08 15.58 5.29 0.08 -11.00 16 11 N -0.74 -10.88 4.94 -58.63 -0.29 -11.17 16 12 C 0.17 3.01 2.42 -67.89 -0.16 2.85 16 13 C -0.14 -2.62 5.65 -26.61 -0.15 -2.77 16 14 C 0.15 3.26 6.52 -3.71 -0.02 3.24 16 15 N -0.59 -14.98 2.99 -172.33 -0.52 -15.50 16 16 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 17 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 18 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 19 N -0.90 -26.18 11.19 55.49 0.62 -25.56 16 20 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 C 0.18 4.15 5.30 -3.71 -0.02 4.13 16 25 C -0.15 -2.71 5.55 -26.61 -0.15 -2.86 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.49 6.36 -51.93 -0.33 0.16 16 28 H 0.07 0.39 7.89 -51.93 -0.41 -0.02 16 29 H 0.09 1.06 7.40 -51.93 -0.38 0.68 16 30 H 0.08 0.59 7.88 -51.93 -0.41 0.18 16 31 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.17 2.19 8.06 -52.49 -0.42 1.77 16 34 H 0.39 4.74 6.33 -40.82 -0.26 4.48 16 35 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 40 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 2.39 6.07 -51.93 -0.31 2.07 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -32.17 368.31 -10.53 -42.70 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.69 Total: 3.80 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -1.21 Total: 3.90 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.72 Total: -59.93 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -11.00 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.51 Total: -1.63 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.17 -10.53 -42.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609336579.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.386 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds