Wall clock time and date at job start Tue Mar 31 2020 13:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00426 * 2 1 4 4 C 1.50698 * 109.46835 * 269.99750 * 3 2 1 5 5 C 1.38428 * 122.53466 * 90.00397 * 4 3 2 6 6 C 1.33388 * 114.91833 * 179.97438 * 5 4 3 7 7 S 1.75887 * 109.59431 * 359.97438 * 6 5 4 8 8 C 1.33382 * 122.53868 * 269.97374 * 4 3 2 9 9 C 1.34782 * 119.99694 * 179.97438 * 2 1 3 10 10 O 1.21587 * 120.00110 * 179.97438 * 9 2 1 11 11 N 1.34775 * 119.99877 * 0.02562 * 9 2 1 12 12 C 1.46503 * 120.00030 * 179.97438 * 11 9 2 13 13 C 1.53039 * 109.46015 * 275.02487 * 12 11 9 14 14 C 1.53188 * 109.31331 * 178.59867 * 13 12 11 15 15 N 1.46928 * 108.76431 * 54.65733 * 14 13 12 16 16 C 1.36941 * 120.62971 * 126.40252 * 15 14 13 17 17 H 1.07993 * 120.00008 * 331.82913 * 16 15 14 18 18 C 1.38808 * 119.99738 * 151.82212 * 16 15 14 19 19 N 1.31624 * 120.00046 * 343.08289 * 18 16 15 20 20 Si 1.86804 * 120.00200 * 163.08113 * 18 16 15 21 21 H 1.48502 * 109.46931 * 59.99732 * 20 18 16 22 22 H 1.48492 * 109.47432 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46927 * 300.00249 * 20 18 16 24 24 C 1.46921 * 118.73923 * 306.38406 * 15 14 13 25 25 C 1.53043 * 109.46170 * 154.97028 * 12 11 9 26 26 H 1.09005 * 109.46671 * 89.99708 * 1 2 3 27 27 H 1.08996 * 109.47409 * 209.99929 * 1 2 3 28 28 H 1.09003 * 109.46824 * 330.00054 * 1 2 3 29 29 H 1.09001 * 109.46913 * 149.99776 * 3 2 1 30 30 H 1.09001 * 109.46585 * 29.99961 * 3 2 1 31 31 H 1.07994 * 122.54318 * 359.70163 * 5 4 3 32 32 H 1.07994 * 125.20467 * 179.97438 * 6 5 4 33 33 H 1.07993 * 125.20780 * 0.05732 * 8 4 3 34 34 H 0.97006 * 120.00092 * 359.97438 * 11 9 2 35 35 H 1.08997 * 109.46031 * 35.00075 * 12 11 9 36 36 H 1.09000 * 109.49798 * 298.56881 * 13 12 11 37 37 H 1.09003 * 109.49402 * 58.66135 * 13 12 11 38 38 H 1.09001 * 109.60288 * 294.86823 * 14 13 12 39 39 H 1.08997 * 109.70492 * 174.50653 * 14 13 12 40 40 H 0.97001 * 119.99993 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.58916 * 293.82042 * 24 15 14 42 42 H 1.08997 * 109.70438 * 173.46814 * 24 15 14 43 43 H 1.08997 * 109.49676 * 301.34006 * 25 12 11 44 44 H 1.09002 * 109.49539 * 61.43321 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 -1.4208 5 6 1.5623 2.5021 -2.1228 6 6 1.9361 2.7957 -3.3691 7 16 3.4875 2.0416 -3.7128 8 6 3.5424 1.3488 -2.0970 9 6 2.1389 -1.1673 0.0005 10 8 3.3547 -1.1674 0.0001 11 7 1.4649 -2.3344 0.0005 12 6 2.1973 -3.6032 0.0005 13 6 2.5617 -3.9816 -1.4369 14 6 3.3575 -5.2905 -1.4300 15 7 2.5802 -6.3125 -0.7159 16 6 2.3076 -7.5190 -1.3037 17 1 2.2369 -7.5921 -2.3788 18 6 2.1223 -8.6479 -0.5175 19 7 2.5259 -8.6509 0.7353 20 14 1.3001 -10.1628 -1.2375 21 1 2.0942 -10.6557 -2.3916 22 1 1.2216 -11.2233 -0.2011 23 1 -0.0697 -9.8136 -1.6924 24 6 2.1013 -6.0157 0.6410 25 6 1.3199 -4.6985 0.6110 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 3.1500 1.1382 0.5139 30 1 1.6085 2.0283 0.5138 31 1 0.6362 2.8567 -1.6953 32 1 1.3724 3.4034 -4.0613 33 1 4.3396 0.7306 -1.7115 34 1 0.4948 -2.3344 0.0005 35 1 3.1080 -3.4969 0.5900 36 1 1.6506 -4.1125 -2.0207 37 1 3.1670 -3.1903 -1.8790 38 1 4.3105 -5.1364 -0.9239 39 1 3.5365 -5.6172 -2.4544 40 1 2.3960 -9.4397 1.2848 41 1 2.9518 -5.9207 1.3161 42 1 1.4500 -6.8193 0.9849 43 1 1.0412 -4.4175 1.6266 44 1 0.4206 -4.8226 0.0077 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609336579.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:20 Heat of formation + Delta-G solvation = 16.459153 kcal Electronic energy + Delta-G solvation = -25340.028359 eV Core-core repulsion = 21805.267358 eV Total energy + Delta-G solvation = -3534.761000 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.40509 -39.50735 -38.69847 -36.22942 -35.99025 -33.87567 -31.89962 -31.41955 -30.69585 -28.34769 -27.45230 -26.46655 -24.17601 -23.86509 -23.28775 -21.19422 -20.90841 -19.69530 -19.25983 -18.60666 -18.22428 -17.56560 -16.88344 -16.74037 -15.99513 -15.76823 -15.54141 -15.36079 -14.99287 -14.77134 -14.53566 -14.08764 -13.96126 -13.90357 -13.75943 -13.69017 -13.27282 -13.20310 -13.06484 -12.99775 -12.58530 -12.54680 -12.39859 -12.19663 -12.03373 -11.87997 -11.69641 -11.55982 -11.37005 -11.15429 -10.55164 -10.10294 -9.72583 -9.52709 -9.34293 -8.71345 -7.87882 -5.33972 0.09743 0.75976 1.11018 1.47323 1.49173 1.51017 1.58150 2.05609 2.20989 2.52161 3.07091 3.28455 3.65537 3.89119 3.99435 4.05345 4.13000 4.25860 4.33739 4.34560 4.45136 4.58645 4.63611 4.67820 4.73403 4.78144 4.82968 4.84927 4.93592 5.00175 5.05299 5.14790 5.15430 5.27606 5.44749 5.47127 5.55879 5.59820 5.63714 5.64552 5.70473 5.97905 6.38701 7.02831 7.14209 7.62411 7.83300 8.36783 9.19191 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022420 B = 0.002682 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.603958 B =10435.682782 C =10992.564917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.625 5.625 3 C 0.192 3.808 4 C -0.128 4.128 5 C -0.124 4.124 6 C -0.212 4.212 7 S 0.073 5.927 8 C -0.207 4.207 9 C 0.698 3.302 10 O -0.631 6.631 11 N -0.728 5.728 12 C 0.182 3.818 13 C -0.121 4.121 14 C 0.146 3.854 15 N -0.608 5.608 16 C -0.267 4.267 17 H 0.067 0.933 18 C -0.049 4.049 19 N -0.935 5.935 20 Si 0.970 3.030 21 H -0.278 1.278 22 H -0.294 1.294 23 H -0.275 1.275 24 C 0.180 3.820 25 C -0.127 4.127 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.124 0.876 31 H 0.169 0.831 32 H 0.189 0.811 33 H 0.144 0.856 34 H 0.407 0.593 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.006 0.994 39 H 0.056 0.944 40 H 0.251 0.749 41 H -0.006 1.006 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.528 26.113 -3.396 27.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.361 5.361 3 C 0.066 3.934 4 C -0.142 4.142 5 C -0.154 4.154 6 C -0.347 4.347 7 S 0.336 5.664 8 C -0.344 4.344 9 C 0.399 3.601 10 O -0.512 6.512 11 N -0.384 5.384 12 C 0.076 3.924 13 C -0.161 4.161 14 C 0.020 3.980 15 N -0.332 5.332 16 C -0.397 4.397 17 H 0.084 0.916 18 C -0.244 4.244 19 N -0.581 5.581 20 Si 0.798 3.202 21 H -0.204 1.204 22 H -0.220 1.220 23 H -0.200 1.200 24 C 0.054 3.946 25 C -0.167 4.167 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.123 0.877 29 H 0.088 0.912 30 H 0.142 0.858 31 H 0.187 0.813 32 H 0.206 0.794 33 H 0.162 0.838 34 H 0.245 0.755 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.012 0.988 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.719 25.954 -4.555 27.194 hybrid contribution -0.985 -1.263 0.928 1.851 sum -7.704 24.691 -3.627 26.118 Atomic orbital electron populations 1.22001 0.77326 1.04827 1.02701 1.47106 1.07762 1.03643 1.77568 1.20038 0.98096 0.84050 0.91179 1.19553 0.94662 1.00726 0.99275 1.20284 1.01501 0.99795 0.93864 1.25923 0.99610 1.07796 1.01395 1.84367 1.20504 1.47747 1.13783 1.25674 1.04048 1.06847 0.97789 1.16155 0.85047 0.81351 0.77508 1.90866 1.13657 1.86886 1.59775 1.45299 1.10166 1.03827 1.79111 1.20461 0.94562 0.81492 0.95858 1.22148 1.00266 0.96838 0.96863 1.20942 0.92348 0.88753 0.95986 1.44339 1.60529 1.13333 1.15010 1.19489 1.42356 0.85943 0.91884 0.91570 1.25830 1.01400 1.00144 0.97027 1.70183 1.49284 1.29816 1.08829 0.85305 0.78959 0.78771 0.77169 1.20366 1.21964 1.20046 1.20554 0.95029 0.93901 0.85156 1.22252 0.98777 0.94878 1.00743 0.92196 0.90788 0.87714 0.91247 0.85817 0.81325 0.79386 0.83801 0.75534 0.92735 0.91847 0.92852 0.97616 0.92575 0.93952 0.98802 0.91721 0.90445 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 10.25 127.77 1.31 2.13 16 2 N -0.62 -12.64 2.86 -869.29 -2.48 -15.12 16 3 C 0.19 3.46 5.70 85.63 0.49 3.95 16 4 C -0.13 -2.50 5.38 -20.92 -0.11 -2.61 16 5 C -0.12 -1.79 9.98 21.22 0.21 -1.58 16 6 C -0.21 -3.12 11.23 66.72 0.75 -2.37 16 7 S 0.07 1.43 23.34 -56.49 -1.32 0.11 16 8 C -0.21 -4.97 10.98 66.72 0.73 -4.24 16 9 C 0.70 20.73 8.24 179.05 1.48 22.21 16 10 O -0.63 -24.36 15.58 -3.99 -0.06 -24.42 16 11 N -0.73 -20.28 4.94 -457.68 -2.26 -22.54 16 12 C 0.18 6.45 2.42 45.02 0.11 6.56 16 13 C -0.12 -4.57 5.65 30.67 0.17 -4.39 16 14 C 0.15 6.57 6.52 86.36 0.56 7.14 16 15 N -0.61 -31.37 2.99 -699.13 -2.09 -33.46 16 16 C -0.27 -14.85 9.58 84.03 0.81 -14.04 16 17 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 18 C -0.05 -2.72 4.92 84.86 0.42 -2.30 16 19 N -0.94 -55.47 11.19 21.65 0.24 -55.23 16 20 Si 0.97 44.69 29.59 68.60 2.03 46.72 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 C 0.18 8.71 5.30 86.36 0.46 9.17 16 25 C -0.13 -4.59 5.55 30.67 0.17 -4.42 16 26 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.07 0.76 6.36 -2.39 -0.02 0.74 16 28 H 0.10 0.54 7.89 -2.39 -0.02 0.52 16 29 H 0.07 1.60 7.40 -2.39 -0.02 1.58 16 30 H 0.12 1.23 7.88 -2.39 -0.02 1.21 16 31 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 32 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 34 H 0.41 8.68 6.33 -92.70 -0.59 8.09 16 35 H 0.05 2.26 7.58 -2.39 -0.02 2.24 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.06 2.46 7.93 -2.39 -0.02 2.45 16 40 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 41 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H 0.06 3.47 6.07 -2.39 -0.01 3.46 16 43 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -72.61 368.31 2.01 -70.59 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.41 Total: 18.15 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 7.55 Total: 15.21 kcal Atomic # 7 Polarization: -119.76 SS G_CDS: -6.60 Total: -126.36 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.06 Total: -24.42 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -1.32 Total: 0.11 kcal Total: -72.61 2.01 -70.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609336579.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.052 kcal (2) G-P(sol) polarization free energy of solvation -72.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds