Wall clock time and date at job start Tue Mar 31 2020 14:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 N 1.46504 * 109.43848 * 181.23616 * 12 11 10 14 14 C 1.34779 * 119.99730 * 84.79387 * 13 12 11 15 15 O 1.21585 * 120.00302 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99707 * 179.97438 * 14 13 12 17 17 C 1.46501 * 119.99874 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.47074 * 180.02562 * 17 16 14 19 19 C 1.52998 * 109.47191 * 179.97438 * 18 17 16 20 20 C 1.52999 * 109.47191 * 179.97438 * 19 18 17 21 21 F 1.39900 * 109.47210 * 59.99916 * 20 19 18 22 22 F 1.39896 * 109.47412 * 180.02562 * 20 19 18 23 23 F 1.39900 * 109.46781 * 299.99940 * 20 19 18 24 24 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 25 25 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 26 26 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 28 28 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 29 29 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 30 30 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 31 31 H 1.08998 * 109.34625 * 301.12703 * 12 11 10 32 32 H 0.96998 * 120.00207 * 264.79594 * 13 12 11 33 33 H 0.97001 * 119.99657 * 0.02562 * 16 14 13 34 34 H 1.09004 * 109.46990 * 300.00222 * 17 16 14 35 35 H 1.08996 * 109.47345 * 60.00048 * 17 16 14 36 36 H 1.08996 * 109.46775 * 300.00361 * 18 17 16 37 37 H 1.09003 * 109.47189 * 59.99939 * 18 17 16 38 38 H 1.09004 * 109.46957 * 299.99809 * 19 18 17 39 39 H 1.08996 * 109.47261 * 59.99563 * 19 18 17 40 40 H 1.09002 * 109.49848 * 178.74812 * 24 12 11 41 41 H 1.09002 * 109.52425 * 58.66284 * 24 12 11 42 42 H 1.09004 * 109.59094 * 246.19900 * 25 9 7 43 43 H 1.09001 * 109.59077 * 6.49172 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 7 6.1710 -2.6584 -3.1401 14 6 7.2000 -2.0803 -3.7908 15 8 7.5960 -0.9828 -3.4488 16 7 7.7907 -2.7193 -4.8201 17 6 8.9096 -2.0911 -5.5271 18 6 9.3926 -3.0189 -6.6437 19 6 10.5607 -2.3626 -7.3824 20 6 11.0442 -3.2907 -8.4986 21 9 9.9972 -3.5250 -9.3965 22 9 12.1126 -2.6909 -9.1738 23 9 11.4652 -4.5049 -7.9458 24 6 4.8755 -2.9898 -1.0921 25 6 4.2351 -2.2628 0.0946 26 1 -0.4850 0.8401 0.0004 27 1 2.9908 0.3501 -1.7559 28 1 4.5579 0.3822 -0.9097 29 1 3.7035 -1.5726 -3.0945 30 1 4.9277 -0.2876 -3.2372 31 1 6.2783 -1.3982 -1.4672 32 1 5.8553 -3.5341 -3.4128 33 1 7.4750 -3.5950 -5.0927 34 1 8.5820 -1.1448 -5.9576 35 1 9.7252 -1.9089 -4.8273 36 1 9.7200 -3.9653 -6.2134 37 1 8.5769 -3.2007 -7.3434 38 1 10.2328 -1.4163 -7.8127 39 1 11.3766 -2.1804 -6.6830 40 1 5.6320 -3.6849 -0.7278 41 1 4.1092 -3.5397 -1.6385 42 1 5.0116 -1.7874 0.6940 43 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610350438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:58 Heat of formation + Delta-G solvation = -174.076141 kcal Electronic energy + Delta-G solvation = -27185.622031 eV Core-core repulsion = 22657.989189 eV Total energy + Delta-G solvation = -4527.632842 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.57198 -48.07122 -48.04750 -40.12193 -37.92053 -36.36732 -34.51190 -33.60029 -32.08271 -30.39877 -30.14251 -28.27496 -25.06507 -23.93438 -22.83492 -22.30546 -21.92646 -20.70950 -19.76125 -19.04247 -18.88288 -18.10221 -17.91322 -16.86446 -16.37170 -16.24501 -15.29846 -15.15207 -14.96295 -14.64548 -14.51887 -14.46260 -14.23915 -14.19509 -14.18255 -14.14766 -13.73580 -13.40530 -13.13538 -12.95683 -12.85655 -12.58843 -12.31152 -11.96422 -11.87790 -11.77285 -11.62060 -11.05155 -10.83564 -10.59483 -10.24668 -10.12179 -10.00660 -9.79610 -9.49517 -9.31107 -8.73306 -8.57813 -6.98708 -5.94439 -3.30437 2.22392 2.63398 3.24419 3.29550 3.36041 3.50454 3.51564 3.54321 3.55493 4.14397 4.29020 4.45152 4.45631 4.55014 4.82416 4.86426 4.96453 5.13517 5.16908 5.31672 5.42941 5.47606 5.53307 5.67235 5.83785 6.04283 6.12916 6.15015 6.26219 6.31857 6.43360 6.56368 6.65224 6.69236 6.75463 6.86099 7.00917 7.96120 8.01148 8.32824 8.62533 8.94113 9.72661 10.10137 11.21324 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.031657 B = 0.001985 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.277911 B =14104.152996 C =14410.005238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.882 3.118 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.260 4.260 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.128 3.872 11 C -0.141 4.141 12 C 0.169 3.831 13 N -0.739 5.739 14 C 0.702 3.298 15 O -0.589 6.589 16 N -0.753 5.753 17 C 0.144 3.856 18 C -0.138 4.138 19 C -0.163 4.163 20 C 0.453 3.547 21 F -0.183 7.183 22 F -0.185 7.185 23 F -0.184 7.184 24 C -0.140 4.140 25 C 0.152 3.848 26 H 0.262 0.738 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.392 0.608 33 H 0.395 0.605 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.025 0.975 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.462 -9.516 -16.355 29.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.389 4.389 8 H 0.103 0.897 9 N -0.330 5.330 10 C 0.002 3.998 11 C -0.181 4.181 12 C 0.064 3.936 13 N -0.392 5.392 14 C 0.402 3.598 15 O -0.467 6.467 16 N -0.410 5.410 17 C 0.019 3.981 18 C -0.176 4.176 19 C -0.202 4.202 20 C 0.399 3.601 21 F -0.165 7.165 22 F -0.166 7.166 23 F -0.165 7.165 24 C -0.180 4.180 25 C 0.025 3.975 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.226 0.774 33 H 0.229 0.771 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 22.672 -8.408 -16.010 29.001 hybrid contribution 0.215 -0.003 -0.627 0.663 sum 22.887 -8.411 -16.637 29.519 Atomic orbital electron populations 1.69839 1.05729 1.26571 1.52991 1.25282 0.95237 0.97639 0.99426 0.86965 0.80073 0.84607 0.77109 1.21587 1.23157 1.19457 1.18906 0.84925 0.94743 1.40277 0.89661 1.44403 1.08641 1.33378 1.46605 1.21315 0.97220 0.92029 0.89215 1.22409 0.97595 0.98743 0.99387 1.20868 0.94058 0.93286 0.85343 1.45458 1.34980 1.22444 1.36328 1.15973 0.80018 0.84144 0.79641 1.90935 1.66976 1.20057 1.68744 1.45055 1.37406 1.22804 1.35694 1.21003 0.88783 0.95568 0.92751 1.21791 0.97495 0.99987 0.98291 1.22774 1.01890 0.99235 0.96289 1.20568 0.75322 0.80579 0.83662 1.93199 1.57707 1.95023 1.70550 1.93201 1.57860 1.83311 1.82245 1.93195 1.90492 1.47658 1.85189 1.22335 0.99502 0.97662 0.98490 1.20864 0.92487 0.91496 0.92654 0.92777 0.90785 0.95481 0.91766 0.92332 0.89961 0.77448 0.77101 0.91208 0.91243 0.89754 0.89712 0.86672 0.86715 0.92160 0.91407 0.95690 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.84 13.97 55.49 0.78 -27.06 16 2 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 3 Si 0.88 22.73 24.34 -169.99 -4.14 18.59 16 4 H -0.29 -7.23 6.62 56.52 0.37 -6.85 16 5 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 6 H -0.27 -6.86 6.64 56.52 0.38 -6.49 16 7 C -0.26 -7.21 10.03 -15.06 -0.15 -7.36 16 8 H 0.09 2.50 8.06 -52.49 -0.42 2.07 16 9 N -0.61 -14.27 2.77 -172.32 -0.48 -14.75 16 10 C 0.13 2.87 4.20 -3.71 -0.02 2.86 16 11 C -0.14 -2.62 5.66 -26.59 -0.15 -2.77 16 12 C 0.17 2.69 2.41 -67.87 -0.16 2.52 16 13 N -0.74 -9.31 5.08 -58.61 -0.30 -9.61 16 14 C 0.70 9.52 8.53 -86.91 -0.74 8.78 16 15 O -0.59 -10.66 16.01 5.29 0.08 -10.58 16 16 N -0.75 -6.66 5.56 -65.22 -0.36 -7.02 16 17 C 0.14 1.04 5.67 -4.04 -0.02 1.02 16 18 C -0.14 -0.60 5.08 -26.73 -0.14 -0.73 16 19 C -0.16 -0.60 5.26 -26.73 -0.14 -0.74 16 20 C 0.45 2.65 3.16 37.16 0.12 2.77 16 21 F -0.18 -1.30 16.80 2.25 0.04 -1.26 16 22 F -0.18 -1.30 17.32 2.25 0.04 -1.26 16 23 F -0.18 -1.27 16.80 2.25 0.04 -1.23 16 24 C -0.14 -2.12 5.55 -26.61 -0.15 -2.26 16 25 C 0.15 2.87 6.52 -3.71 -0.02 2.85 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.07 1.82 4.49 -51.93 -0.23 1.58 16 28 H 0.03 0.62 7.07 -51.93 -0.37 0.25 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 32 H 0.39 3.72 8.62 -40.82 -0.35 3.37 16 33 H 0.40 2.34 8.49 -40.82 -0.35 1.99 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.34 7.80 -51.93 -0.41 -0.07 16 37 H 0.08 0.36 7.80 -51.93 -0.41 -0.05 16 38 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 1.27 7.93 -51.93 -0.41 0.85 16 LS Contribution 355.73 15.07 5.36 5.36 Total: -1.00 -34.36 355.73 -6.94 -41.30 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.33 Total: 0.01 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -1.67 Total: 7.50 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.36 Total: -58.44 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.11 Total: -3.75 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.14 Total: 18.59 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.36 -6.94 -41.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610350438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.778 kcal (2) G-P(sol) polarization free energy of solvation -34.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds