Wall clock time and date at job start Tue Mar 31 2020 14:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 N 1.46504 * 109.43848 * 181.23616 * 12 11 10 14 14 C 1.34779 * 119.99730 * 84.79387 * 13 12 11 15 15 O 1.21585 * 120.00302 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99707 * 179.97438 * 14 13 12 17 17 C 1.46501 * 119.99874 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.47074 * 180.02562 * 17 16 14 19 19 C 1.52998 * 109.47191 * 179.97438 * 18 17 16 20 20 C 1.52999 * 109.47191 * 179.97438 * 19 18 17 21 21 F 1.39900 * 109.47210 * 59.99916 * 20 19 18 22 22 F 1.39896 * 109.47412 * 180.02562 * 20 19 18 23 23 F 1.39900 * 109.46781 * 299.99940 * 20 19 18 24 24 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 25 25 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 26 26 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 28 28 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 29 29 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 30 30 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 31 31 H 1.08998 * 109.34625 * 301.12703 * 12 11 10 32 32 H 0.96998 * 120.00207 * 264.79594 * 13 12 11 33 33 H 0.97001 * 119.99657 * 0.02562 * 16 14 13 34 34 H 1.09004 * 109.46990 * 300.00222 * 17 16 14 35 35 H 1.08996 * 109.47345 * 60.00048 * 17 16 14 36 36 H 1.08996 * 109.46775 * 300.00361 * 18 17 16 37 37 H 1.09003 * 109.47189 * 59.99939 * 18 17 16 38 38 H 1.09004 * 109.46957 * 299.99809 * 19 18 17 39 39 H 1.08996 * 109.47261 * 59.99563 * 19 18 17 40 40 H 1.09002 * 109.49848 * 178.74812 * 24 12 11 41 41 H 1.09002 * 109.52425 * 58.66284 * 24 12 11 42 42 H 1.09004 * 109.59094 * 246.19900 * 25 9 7 43 43 H 1.09001 * 109.59077 * 6.49172 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 7 6.1710 -2.6584 -3.1401 14 6 7.2000 -2.0803 -3.7908 15 8 7.5960 -0.9828 -3.4488 16 7 7.7907 -2.7193 -4.8201 17 6 8.9096 -2.0911 -5.5271 18 6 9.3926 -3.0189 -6.6437 19 6 10.5607 -2.3626 -7.3824 20 6 11.0442 -3.2907 -8.4986 21 9 9.9972 -3.5250 -9.3965 22 9 12.1126 -2.6909 -9.1738 23 9 11.4652 -4.5049 -7.9458 24 6 4.8755 -2.9898 -1.0921 25 6 4.2351 -2.2628 0.0946 26 1 -0.4850 0.8401 0.0004 27 1 2.9908 0.3501 -1.7559 28 1 4.5579 0.3822 -0.9097 29 1 3.7035 -1.5726 -3.0945 30 1 4.9277 -0.2876 -3.2372 31 1 6.2783 -1.3982 -1.4672 32 1 5.8553 -3.5341 -3.4128 33 1 7.4750 -3.5950 -5.0927 34 1 8.5820 -1.1448 -5.9576 35 1 9.7252 -1.9089 -4.8273 36 1 9.7200 -3.9653 -6.2134 37 1 8.5769 -3.2007 -7.3434 38 1 10.2328 -1.4163 -7.8127 39 1 11.3766 -2.1804 -6.6830 40 1 5.6320 -3.6849 -0.7278 41 1 4.1092 -3.5397 -1.6385 42 1 5.0116 -1.7874 0.6940 43 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610350438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:57 Heat of formation + Delta-G solvation = -199.000103 kcal Electronic energy + Delta-G solvation = -27186.702815 eV Core-core repulsion = 22657.989189 eV Total energy + Delta-G solvation = -4528.713626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.05461 -48.56824 -48.53943 -41.20003 -39.35295 -37.11055 -35.95831 -34.43544 -33.82086 -31.95486 -31.66781 -28.96753 -26.72173 -24.70383 -24.40079 -23.50004 -22.67513 -21.78048 -21.23549 -19.51272 -19.51049 -19.10758 -18.68019 -18.39052 -17.61604 -16.90284 -16.88625 -15.99266 -15.92717 -15.63495 -15.46638 -15.39268 -15.28951 -15.23621 -14.97831 -14.82844 -14.70519 -14.69164 -14.51560 -14.06327 -13.90058 -13.58692 -13.53819 -13.40576 -12.99754 -12.68684 -12.54956 -12.34770 -12.20732 -12.03587 -12.00172 -11.74036 -11.47642 -11.46078 -11.25438 -10.74734 -10.30303 -9.72720 -8.95904 -8.16820 -5.47754 1.29548 1.40135 1.48686 1.63354 1.91552 2.19510 2.40996 2.86903 3.03853 3.04910 3.14098 3.30921 3.41846 3.83397 3.94401 3.96856 3.99981 4.04776 4.27053 4.33202 4.46629 4.48640 4.52791 4.69329 4.70144 4.73774 4.87367 4.97264 5.01996 5.03762 5.09465 5.10708 5.18501 5.44491 5.51846 5.59609 5.87553 6.06240 6.13639 6.91265 7.15480 7.62129 7.63572 8.03512 9.02715 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.031657 B = 0.001985 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.277911 B =14104.152996 C =14410.005238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.033 4.033 3 Si 0.938 3.062 4 H -0.281 1.281 5 H -0.310 1.310 6 H -0.264 1.264 7 C -0.243 4.243 8 H 0.061 0.939 9 N -0.619 5.619 10 C 0.125 3.875 11 C -0.130 4.130 12 C 0.179 3.821 13 N -0.726 5.726 14 C 0.698 3.302 15 O -0.637 6.637 16 N -0.734 5.734 17 C 0.142 3.858 18 C -0.126 4.126 19 C -0.158 4.158 20 C 0.451 3.549 21 F -0.192 7.192 22 F -0.193 7.193 23 F -0.191 7.191 24 C -0.124 4.124 25 C 0.142 3.858 26 H 0.261 0.739 27 H 0.049 0.951 28 H 0.025 0.975 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.411 0.589 33 H 0.413 0.587 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.033 0.967 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.720 -10.793 -17.379 32.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.228 4.228 3 Si 0.768 3.232 4 H -0.208 1.208 5 H -0.238 1.238 6 H -0.189 1.189 7 C -0.372 4.372 8 H 0.079 0.921 9 N -0.344 5.344 10 C -0.001 4.001 11 C -0.170 4.170 12 C 0.073 3.927 13 N -0.381 5.381 14 C 0.398 3.602 15 O -0.518 6.518 16 N -0.391 5.391 17 C 0.018 3.982 18 C -0.164 4.164 19 C -0.196 4.196 20 C 0.398 3.602 21 F -0.173 7.173 22 F -0.174 7.174 23 F -0.172 7.172 24 C -0.163 4.163 25 C 0.017 3.983 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.248 0.752 33 H 0.249 0.751 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 24.986 -9.764 -17.084 31.804 hybrid contribution -0.425 0.291 -0.345 0.620 sum 24.561 -9.473 -17.429 31.571 Atomic orbital electron populations 1.69949 1.07148 1.27055 1.55898 1.25842 0.95786 1.00572 1.00635 0.86042 0.78798 0.81083 0.77263 1.20816 1.23844 1.18913 1.18905 0.86602 0.93621 1.38087 0.92094 1.44538 1.07995 1.34575 1.47287 1.21272 0.96375 0.92130 0.90284 1.22241 0.98145 0.98978 0.97641 1.20519 0.92863 0.93117 0.86166 1.45083 1.34621 1.22938 1.35478 1.16168 0.80064 0.83709 0.80275 1.90910 1.68352 1.22316 1.70258 1.44916 1.36969 1.23187 1.34060 1.21094 0.87991 0.95905 0.93241 1.21678 0.97798 0.99572 0.97334 1.22796 1.02097 0.98982 0.95749 1.20863 0.74907 0.80578 0.83891 1.93183 1.58009 1.95101 1.71023 1.93185 1.58318 1.83404 1.82529 1.93181 1.90577 1.48251 1.85208 1.22143 1.00205 0.97318 0.96645 1.21118 0.91973 0.90667 0.94504 0.93014 0.93321 0.95692 0.91820 0.92594 0.91573 0.75226 0.75061 0.92112 0.91664 0.88921 0.89241 0.85532 0.85309 0.88477 0.90972 0.94854 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.99 13.97 21.65 0.30 -59.68 16 2 C -0.03 -1.97 5.23 84.86 0.44 -1.52 16 3 Si 0.94 47.79 24.34 68.60 1.67 49.46 16 4 H -0.28 -13.81 6.62 99.48 0.66 -13.15 16 5 H -0.31 -15.93 7.11 99.48 0.71 -15.22 16 6 H -0.26 -13.06 6.64 99.48 0.66 -12.40 16 7 C -0.24 -13.56 10.03 84.03 0.84 -12.72 16 8 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 9 N -0.62 -28.69 2.77 -699.09 -1.94 -30.63 16 10 C 0.13 5.51 4.20 86.36 0.36 5.87 16 11 C -0.13 -4.63 5.66 30.68 0.17 -4.46 16 12 C 0.18 5.26 2.41 45.03 0.11 5.37 16 13 N -0.73 -16.07 5.08 -457.61 -2.33 -18.40 16 14 C 0.70 17.24 8.53 179.05 1.53 18.77 16 15 O -0.64 -22.16 16.01 -3.98 -0.06 -22.22 16 16 N -0.73 -10.87 5.56 -478.52 -2.66 -13.53 16 17 C 0.14 1.71 5.67 86.38 0.49 2.20 16 18 C -0.13 -0.74 5.08 30.59 0.16 -0.58 16 19 C -0.16 -0.78 5.26 30.59 0.16 -0.62 16 20 C 0.45 4.47 3.16 71.98 0.23 4.69 16 21 F -0.19 -2.39 16.80 44.97 0.76 -1.64 16 22 F -0.19 -2.44 17.32 44.97 0.78 -1.66 16 23 F -0.19 -2.29 16.80 44.97 0.76 -1.53 16 24 C -0.12 -3.33 5.55 30.67 0.17 -3.16 16 25 C 0.14 5.12 6.52 86.37 0.56 5.68 16 26 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 27 H 0.05 2.38 4.49 -2.39 -0.01 2.37 16 28 H 0.03 1.11 7.07 -2.38 -0.02 1.10 16 29 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 2.23 7.58 -2.39 -0.02 2.21 16 32 H 0.41 6.15 8.62 -92.71 -0.80 5.35 16 33 H 0.41 3.36 8.49 -92.71 -0.79 2.57 16 34 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.09 0.44 7.80 -2.39 -0.02 0.42 16 37 H 0.09 0.49 7.80 -2.39 -0.02 0.47 16 38 H 0.13 0.38 8.14 -2.38 -0.02 0.36 16 39 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.07 2.47 7.93 -2.39 -0.02 2.45 16 Total: -1.00 -75.84 355.73 1.87 -73.97 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -0.63 Total: 6.34 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 5.23 Total: 19.53 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -6.62 Total: -122.24 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.06 Total: -22.22 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 2.29 Total: -4.83 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 1.67 Total: 49.46 kcal Total: -75.84 1.87 -73.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610350438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.030 kcal (2) G-P(sol) polarization free energy of solvation -75.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds