Wall clock time and date at job start Tue Mar 31 2020 13:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 116.99703 * 2 1 4 4 O 1.20831 * 120.00317 * 5.19616 * 3 2 1 5 5 C 1.50698 * 120.00319 * 185.20002 * 3 2 1 6 6 N 1.46496 * 109.47509 * 184.99450 * 5 3 2 7 7 C 1.36945 * 119.99698 * 271.80594 * 6 5 3 8 8 H 1.07992 * 120.00241 * 354.11747 * 7 6 5 9 9 C 1.38817 * 119.99528 * 174.11548 * 7 6 5 10 10 N 1.31616 * 120.00269 * 37.77332 * 9 7 6 11 11 Si 1.86804 * 119.99742 * 217.77361 * 9 7 6 12 12 H 1.48493 * 109.47352 * 59.99970 * 11 9 7 13 13 H 1.48496 * 109.47156 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46847 * 300.00025 * 11 9 7 15 15 C 1.46499 * 120.00437 * 91.80517 * 6 5 3 16 16 C 1.53006 * 109.47005 * 81.99324 * 15 6 5 17 17 O 1.42898 * 109.46903 * 68.71549 * 16 15 6 18 18 C 1.42903 * 113.99714 * 184.78794 * 17 16 15 19 19 C 1.50703 * 109.46920 * 175.44110 * 18 17 16 20 20 C 1.38267 * 119.93841 * 274.27059 * 19 18 17 21 21 C 1.38149 * 120.05126 * 179.72579 * 20 19 18 22 22 C 1.38726 * 119.94293 * 0.57150 * 21 20 19 23 23 O 1.35905 * 120.05439 * 179.67897 * 22 21 20 24 24 C 1.42901 * 117.00087 * 0.02584 * 23 22 21 25 25 C 1.38734 * 119.89239 * 359.70716 * 22 21 20 26 26 C 1.38150 * 119.93966 * 359.97438 * 25 22 21 27 27 H 1.09001 * 109.46834 * 183.71213 * 1 2 3 28 28 H 1.08997 * 109.47657 * 303.70831 * 1 2 3 29 29 H 1.08996 * 109.47131 * 63.71619 * 1 2 3 30 30 H 1.09007 * 109.46916 * 64.99065 * 5 3 2 31 31 H 1.08998 * 109.46769 * 304.99509 * 5 3 2 32 32 H 0.96999 * 119.99907 * 179.97438 * 10 9 7 33 33 H 1.09003 * 109.46600 * 321.99796 * 15 6 5 34 34 H 1.08994 * 109.47753 * 201.99578 * 15 6 5 35 35 H 1.08999 * 109.46795 * 308.71131 * 16 15 6 36 36 H 1.08996 * 109.46753 * 188.71680 * 16 15 6 37 37 H 1.09000 * 109.46580 * 295.43385 * 18 17 16 38 38 H 1.08997 * 109.47663 * 55.43502 * 18 17 16 39 39 H 1.08001 * 119.97148 * 359.97438 * 20 19 18 40 40 H 1.07997 * 120.02480 * 180.25581 * 21 20 19 41 41 H 1.09004 * 109.46840 * 300.00155 * 24 23 22 42 42 H 1.09004 * 109.46770 * 59.99963 * 24 23 22 43 43 H 1.08992 * 109.47001 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.03080 * 179.97438 * 25 22 21 45 45 H 1.08001 * 119.96908 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4070 2.2074 0.0948 5 6 3.5614 1.2775 -0.1183 6 7 3.9877 2.6716 0.0255 7 6 4.0507 3.4852 -1.0743 8 1 3.8787 3.0764 -2.0590 9 6 4.3356 4.8354 -0.9233 10 7 5.2113 5.2265 -0.0219 11 14 3.4760 6.0974 -1.9995 12 1 2.0090 6.0140 -1.7847 13 1 3.9523 7.4581 -1.6436 14 1 3.7838 5.8230 -3.4261 15 6 4.3465 3.1956 1.3457 16 6 5.7892 2.8058 1.6742 17 8 6.6821 3.5162 0.8140 18 6 8.0535 3.1438 0.9647 19 6 8.8864 3.8685 -0.0612 20 6 9.0338 3.3383 -1.3296 21 6 9.7921 4.0035 -2.2736 22 6 10.4156 5.1982 -1.9443 23 8 11.1674 5.8511 -2.8691 24 6 11.2723 5.2502 -4.1614 25 6 10.2708 5.7251 -0.6691 26 6 9.5061 5.0594 0.2693 27 1 -0.3633 -1.0255 0.0665 28 1 -0.3634 0.5703 0.8548 29 1 -0.3633 0.4551 -0.9214 30 1 3.8698 0.9019 -1.0940 31 1 4.0208 0.6745 0.6649 32 1 5.4106 6.1699 0.0833 33 1 3.6769 2.7768 2.0970 34 1 4.2554 4.2817 1.3427 35 1 5.9184 1.7336 1.5265 36 1 6.0064 3.0583 2.7120 37 1 8.3949 3.4116 1.9646 38 1 8.1559 2.0681 0.8217 39 1 8.5525 2.4056 -1.5839 40 1 9.9036 3.5911 -3.2655 41 1 11.7190 4.2604 -4.0666 42 1 10.2793 5.1601 -4.6018 43 1 11.8982 5.8720 -4.8014 44 1 10.7556 6.6548 -0.4101 45 1 9.3934 5.4689 1.2623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610432330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:31 Heat of formation + Delta-G solvation = -85.809366 kcal Electronic energy + Delta-G solvation = -27827.053074 eV Core-core repulsion = 23812.811756 eV Total energy + Delta-G solvation = -4014.241318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.82609 -39.51356 -37.67571 -36.66958 -35.74838 -34.79134 -31.44671 -30.98534 -30.62915 -28.91779 -27.75355 -27.29227 -25.99134 -24.67242 -23.10952 -22.29146 -21.11344 -20.74221 -19.63708 -17.91658 -16.97179 -16.79635 -16.05742 -15.90055 -15.67207 -15.59514 -15.47403 -15.11734 -14.62728 -14.41325 -14.06211 -13.64512 -13.41248 -13.26961 -13.07633 -12.95872 -12.55764 -12.41475 -12.38058 -11.86872 -11.58933 -11.42010 -11.34319 -11.10272 -10.92099 -10.73607 -10.68621 -10.50352 -10.37687 -10.16993 -10.14259 -9.91191 -9.60931 -9.49691 -8.60775 -8.36984 -8.11219 -7.77882 -7.02186 -5.72559 -2.88477 1.73532 1.78284 3.13951 3.39557 3.43620 3.55602 3.59527 3.68251 4.06802 4.61020 5.00250 5.02921 5.16287 5.18028 5.24815 5.32696 5.42288 5.45931 5.46467 5.51722 5.60187 5.65028 5.67601 5.76857 5.90216 5.94305 6.02474 6.03948 6.08609 6.25088 6.28706 6.39609 6.45520 6.59767 6.66004 6.74849 6.80389 7.09287 7.11564 7.14256 7.63188 7.64353 7.89027 8.27464 8.57950 8.70643 9.18465 9.88055 10.28272 11.25504 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.014817 B = 0.003440 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.294526 B = 8138.140328 C = 8727.020752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.381 6.381 3 C 0.412 3.588 4 O -0.493 6.493 5 C 0.162 3.838 6 N -0.555 5.555 7 C -0.282 4.282 8 H 0.073 0.927 9 C 0.036 3.964 10 N -0.815 5.815 11 Si 0.855 3.145 12 H -0.286 1.286 13 H -0.293 1.293 14 H -0.287 1.287 15 C 0.144 3.856 16 C 0.059 3.941 17 O -0.280 6.280 18 C 0.089 3.911 19 C -0.092 4.092 20 C -0.053 4.053 21 C -0.210 4.210 22 C 0.117 3.883 23 O -0.323 6.323 24 C 0.029 3.971 25 C -0.157 4.157 26 C -0.059 4.059 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.251 0.749 33 H 0.024 0.976 34 H 0.121 0.879 35 H 0.016 0.984 36 H 0.019 0.981 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.094 0.906 44 H 0.124 0.876 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.242 -6.740 0.116 10.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.298 6.298 3 C 0.250 3.750 4 O -0.377 6.377 5 C 0.029 3.971 6 N -0.273 5.273 7 C -0.409 4.409 8 H 0.091 0.909 9 C -0.166 4.166 10 N -0.454 5.454 11 Si 0.683 3.317 12 H -0.213 1.213 13 H -0.220 1.220 14 H -0.213 1.213 15 C 0.018 3.982 16 C -0.021 4.021 17 O -0.196 6.196 18 C 0.012 3.988 19 C -0.092 4.092 20 C -0.071 4.071 21 C -0.229 4.229 22 C 0.072 3.928 23 O -0.237 6.237 24 C -0.066 4.066 25 C -0.175 4.175 26 C -0.078 4.078 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.138 0.862 35 H 0.034 0.966 36 H 0.037 0.963 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.113 0.887 44 H 0.142 0.858 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.185 -5.881 0.100 10.079 hybrid contribution -0.926 0.379 -0.697 1.219 sum 7.259 -5.502 -0.597 9.128 Atomic orbital electron populations 1.23022 0.79252 1.02117 1.01731 1.86646 1.21589 1.36372 1.85188 1.27490 0.94858 0.80603 0.72088 1.90603 1.66880 1.36558 1.43698 1.20454 0.85260 0.88995 1.02433 1.43733 1.71799 1.06331 1.05390 1.18726 1.46783 0.89095 0.86279 0.90933 1.24659 0.97392 0.96951 0.97610 1.70395 1.24853 1.14807 1.35379 0.87079 0.82000 0.81731 0.80915 1.21287 1.21954 1.21289 1.21445 0.88888 1.03970 0.83861 1.22943 0.94432 0.93242 0.91465 1.88934 1.10609 1.60153 1.59898 1.21192 0.87041 0.95882 0.94725 1.19513 0.98238 0.96162 0.95280 1.20788 0.94865 0.99400 0.92024 1.21117 1.04095 0.96968 1.00675 1.18977 0.92622 0.91746 0.89442 1.86020 1.66783 1.49285 1.21618 1.22986 1.02009 0.98889 0.82733 1.20296 1.04259 1.01742 0.91249 1.20790 0.94567 0.93470 0.98939 0.89461 0.92767 0.92866 0.89347 0.90401 0.93807 0.95805 0.86177 0.96576 0.96304 0.94743 0.94695 0.85923 0.85993 0.92917 0.92645 0.88709 0.85780 0.85649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.63 101.05 1.07 1.55 16 2 O -0.38 -6.61 10.57 -39.25 -0.41 -7.03 16 3 C 0.41 8.45 8.01 36.00 0.29 8.73 16 4 O -0.49 -12.06 16.06 -18.75 -0.30 -12.37 16 5 C 0.16 3.19 6.27 -5.20 -0.03 3.16 16 6 N -0.55 -13.27 2.04 -174.61 -0.36 -13.63 16 7 C -0.28 -7.61 9.55 -15.05 -0.14 -7.75 16 8 H 0.07 1.98 8.04 -52.49 -0.42 1.56 16 9 C 0.04 0.99 4.83 -17.43 -0.08 0.90 16 10 N -0.82 -22.03 8.04 55.49 0.45 -21.59 16 11 Si 0.85 21.97 29.68 -169.99 -5.05 16.92 16 12 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 13 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 15 C 0.14 3.29 5.56 -4.04 -0.02 3.26 16 16 C 0.06 1.19 6.25 37.16 0.23 1.42 16 17 O -0.28 -6.18 7.57 -35.23 -0.27 -6.44 16 18 C 0.09 1.60 6.06 36.01 0.22 1.82 16 19 C -0.09 -1.63 5.51 -104.60 -0.58 -2.21 16 20 C -0.05 -0.90 9.71 -39.60 -0.38 -1.28 16 21 C -0.21 -3.31 9.04 -39.43 -0.36 -3.67 16 22 C 0.12 1.88 6.69 -39.22 -0.26 1.62 16 23 O -0.32 -4.73 10.50 -19.44 -0.20 -4.94 16 24 C 0.03 0.30 9.81 101.05 0.99 1.30 16 25 C -0.16 -2.51 9.99 -39.43 -0.39 -2.91 16 26 C -0.06 -0.99 9.67 -39.61 -0.38 -1.37 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.78 8.00 -51.93 -0.42 0.36 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.64 8.05 -51.93 -0.42 1.23 16 31 H 0.08 1.32 7.82 -51.93 -0.41 0.91 16 32 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 33 H 0.02 0.51 8.13 -51.93 -0.42 0.09 16 34 H 0.12 3.14 5.18 -51.93 -0.27 2.88 16 35 H 0.02 0.30 7.89 -51.93 -0.41 -0.11 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.03 0.56 8.05 -51.93 -0.42 0.14 16 38 H 0.03 0.58 8.09 -51.93 -0.42 0.16 16 39 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 40 H 0.12 1.62 6.30 -52.49 -0.33 1.29 16 41 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 42 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 45 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 379.30 15.07 5.72 5.72 Total: -1.00 -32.43 379.30 -7.08 -39.52 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.82 Total: -0.73 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 0.17 Total: 4.57 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.09 Total: -35.22 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -1.19 Total: -30.78 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.05 Total: 16.92 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.43 -7.08 -39.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610432330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.293 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds