Wall clock time and date at job start Tue Mar 31 2020 13:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 116.99703 * 2 1 4 4 O 1.20831 * 120.00317 * 5.19616 * 3 2 1 5 5 C 1.50698 * 120.00319 * 185.20002 * 3 2 1 6 6 N 1.46496 * 109.47509 * 184.99450 * 5 3 2 7 7 C 1.36945 * 119.99698 * 271.80594 * 6 5 3 8 8 H 1.07992 * 120.00241 * 354.11747 * 7 6 5 9 9 C 1.38817 * 119.99528 * 174.11548 * 7 6 5 10 10 N 1.31616 * 120.00269 * 37.77332 * 9 7 6 11 11 Si 1.86804 * 119.99742 * 217.77361 * 9 7 6 12 12 H 1.48493 * 109.47352 * 59.99970 * 11 9 7 13 13 H 1.48496 * 109.47156 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46847 * 300.00025 * 11 9 7 15 15 C 1.46499 * 120.00437 * 91.80517 * 6 5 3 16 16 C 1.53006 * 109.47005 * 81.99324 * 15 6 5 17 17 O 1.42898 * 109.46903 * 68.71549 * 16 15 6 18 18 C 1.42903 * 113.99714 * 184.78794 * 17 16 15 19 19 C 1.50703 * 109.46920 * 175.44110 * 18 17 16 20 20 C 1.38267 * 119.93841 * 274.27059 * 19 18 17 21 21 C 1.38149 * 120.05126 * 179.72579 * 20 19 18 22 22 C 1.38726 * 119.94293 * 0.57150 * 21 20 19 23 23 O 1.35905 * 120.05439 * 179.67897 * 22 21 20 24 24 C 1.42901 * 117.00087 * 0.02584 * 23 22 21 25 25 C 1.38734 * 119.89239 * 359.70716 * 22 21 20 26 26 C 1.38150 * 119.93966 * 359.97438 * 25 22 21 27 27 H 1.09001 * 109.46834 * 183.71213 * 1 2 3 28 28 H 1.08997 * 109.47657 * 303.70831 * 1 2 3 29 29 H 1.08996 * 109.47131 * 63.71619 * 1 2 3 30 30 H 1.09007 * 109.46916 * 64.99065 * 5 3 2 31 31 H 1.08998 * 109.46769 * 304.99509 * 5 3 2 32 32 H 0.96999 * 119.99907 * 179.97438 * 10 9 7 33 33 H 1.09003 * 109.46600 * 321.99796 * 15 6 5 34 34 H 1.08994 * 109.47753 * 201.99578 * 15 6 5 35 35 H 1.08999 * 109.46795 * 308.71131 * 16 15 6 36 36 H 1.08996 * 109.46753 * 188.71680 * 16 15 6 37 37 H 1.09000 * 109.46580 * 295.43385 * 18 17 16 38 38 H 1.08997 * 109.47663 * 55.43502 * 18 17 16 39 39 H 1.08001 * 119.97148 * 359.97438 * 20 19 18 40 40 H 1.07997 * 120.02480 * 180.25581 * 21 20 19 41 41 H 1.09004 * 109.46840 * 300.00155 * 24 23 22 42 42 H 1.09004 * 109.46770 * 59.99963 * 24 23 22 43 43 H 1.08992 * 109.47001 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.03080 * 179.97438 * 25 22 21 45 45 H 1.08001 * 119.96908 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4070 2.2074 0.0948 5 6 3.5614 1.2775 -0.1183 6 7 3.9877 2.6716 0.0255 7 6 4.0507 3.4852 -1.0743 8 1 3.8787 3.0764 -2.0590 9 6 4.3356 4.8354 -0.9233 10 7 5.2113 5.2265 -0.0219 11 14 3.4760 6.0974 -1.9995 12 1 2.0090 6.0140 -1.7847 13 1 3.9523 7.4581 -1.6436 14 1 3.7838 5.8230 -3.4261 15 6 4.3465 3.1956 1.3457 16 6 5.7892 2.8058 1.6742 17 8 6.6821 3.5162 0.8140 18 6 8.0535 3.1438 0.9647 19 6 8.8864 3.8685 -0.0612 20 6 9.0338 3.3383 -1.3296 21 6 9.7921 4.0035 -2.2736 22 6 10.4156 5.1982 -1.9443 23 8 11.1674 5.8511 -2.8691 24 6 11.2723 5.2502 -4.1614 25 6 10.2708 5.7251 -0.6691 26 6 9.5061 5.0594 0.2693 27 1 -0.3633 -1.0255 0.0665 28 1 -0.3634 0.5703 0.8548 29 1 -0.3633 0.4551 -0.9214 30 1 3.8698 0.9019 -1.0940 31 1 4.0208 0.6745 0.6649 32 1 5.4106 6.1699 0.0833 33 1 3.6769 2.7768 2.0970 34 1 4.2554 4.2817 1.3427 35 1 5.9184 1.7336 1.5265 36 1 6.0064 3.0583 2.7120 37 1 8.3949 3.4116 1.9646 38 1 8.1559 2.0681 0.8217 39 1 8.5525 2.4056 -1.5839 40 1 9.9036 3.5911 -3.2655 41 1 11.7190 4.2604 -4.0666 42 1 10.2793 5.1601 -4.6018 43 1 11.8982 5.8720 -4.8014 44 1 10.7556 6.6548 -0.4101 45 1 9.3934 5.4689 1.2623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610432330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:30 Heat of formation + Delta-G solvation = -103.964859 kcal Electronic energy + Delta-G solvation = -27827.840355 eV Core-core repulsion = 23812.811756 eV Total energy + Delta-G solvation = -4015.028599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.10487 -40.98011 -39.00112 -38.16030 -37.27326 -36.49375 -33.38600 -32.27141 -31.88044 -30.44878 -29.22194 -28.32726 -27.54694 -25.99316 -24.86583 -23.50138 -22.75078 -21.98240 -21.30900 -19.04488 -18.82361 -18.38453 -17.49602 -17.23145 -17.18990 -16.96764 -16.59186 -16.44575 -16.33602 -16.06432 -15.38362 -15.27022 -15.03702 -14.54249 -14.43362 -14.29390 -14.08937 -13.86620 -13.50419 -13.29141 -13.05953 -12.87505 -12.78925 -12.66480 -12.59188 -12.44520 -12.17237 -12.01090 -11.85827 -11.80288 -11.64403 -11.60592 -11.33892 -11.20460 -10.11031 -9.86516 -9.82220 -9.04956 -8.86637 -7.75633 -4.89411 0.49525 0.52005 1.41603 1.50054 1.52679 1.57408 2.02267 2.42129 2.59626 2.79212 3.31231 3.61436 3.69230 3.91495 4.02036 4.22917 4.28845 4.30698 4.36335 4.40063 4.41294 4.48208 4.51406 4.55055 4.64235 4.68857 4.70934 4.74254 4.76483 4.80978 4.84876 4.92837 4.99985 5.13966 5.19083 5.37752 5.47979 5.61450 5.78106 5.82062 5.84422 5.89600 6.35123 6.50252 7.04804 7.11651 7.25204 7.94636 8.32580 9.18846 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.014817 B = 0.003440 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.294526 B = 8138.140328 C = 8727.020752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.373 6.373 3 C 0.421 3.579 4 O -0.539 6.539 5 C 0.159 3.841 6 N -0.572 5.572 7 C -0.281 4.281 8 H 0.061 0.939 9 C 0.002 3.998 10 N -0.814 5.814 11 Si 0.886 3.114 12 H -0.305 1.305 13 H -0.295 1.295 14 H -0.286 1.286 15 C 0.144 3.856 16 C 0.065 3.935 17 O -0.315 6.315 18 C 0.090 3.910 19 C -0.114 4.114 20 C -0.068 4.068 21 C -0.214 4.214 22 C 0.111 3.889 23 O -0.335 6.335 24 C 0.019 3.981 25 C -0.167 4.167 26 C -0.068 4.068 27 H 0.132 0.868 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.242 0.758 33 H 0.035 0.965 34 H 0.085 0.915 35 H 0.034 0.966 36 H 0.036 0.964 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.125 0.875 40 H 0.144 0.856 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.122 0.878 44 H 0.139 0.861 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.890 -8.452 -0.026 12.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.289 6.289 3 C 0.262 3.738 4 O -0.427 6.427 5 C 0.028 3.972 6 N -0.291 5.291 7 C -0.409 4.409 8 H 0.079 0.921 9 C -0.199 4.199 10 N -0.454 5.454 11 Si 0.716 3.284 12 H -0.234 1.234 13 H -0.222 1.222 14 H -0.212 1.212 15 C 0.019 3.981 16 C -0.015 4.015 17 O -0.233 6.233 18 C 0.013 3.987 19 C -0.114 4.114 20 C -0.086 4.086 21 C -0.232 4.232 22 C 0.066 3.934 23 O -0.250 6.250 24 C -0.075 4.075 25 C -0.186 4.186 26 C -0.086 4.086 27 H 0.150 0.850 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.131 0.869 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.102 0.898 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.143 0.857 40 H 0.162 0.838 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.140 0.860 44 H 0.157 0.843 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.839 -7.643 -0.047 11.685 hybrid contribution -1.196 0.779 -0.705 1.591 sum 7.643 -6.864 -0.752 10.300 Atomic orbital electron populations 1.23367 0.76847 1.04975 1.01436 1.86582 1.23703 1.34225 1.84391 1.27207 0.95118 0.80640 0.70881 1.90600 1.67896 1.38204 1.46044 1.20679 0.84682 0.87426 1.04416 1.43775 1.72941 1.07568 1.04799 1.18754 1.45600 0.89632 0.86896 0.92065 1.24973 0.98455 0.97796 0.98672 1.70533 1.25187 1.13928 1.35766 0.86557 0.80383 0.81085 0.80382 1.23361 1.22199 1.21231 1.21298 0.91040 1.01899 0.83836 1.22813 0.92605 0.93990 0.92044 1.88856 1.12561 1.61157 1.60688 1.21293 0.85171 0.96646 0.95611 1.19683 0.98998 0.96961 0.95772 1.20956 0.95449 0.99854 0.92313 1.21357 1.03537 0.96872 1.01451 1.19158 0.92557 0.91822 0.89896 1.86009 1.66275 1.49811 1.22855 1.23310 1.02715 1.00308 0.81190 1.20562 1.04243 1.02340 0.91433 1.20982 0.94576 0.93313 0.99712 0.84955 0.93235 0.93171 0.88089 0.86925 0.94737 0.94717 0.89751 0.94799 0.94628 0.93291 0.93459 0.85700 0.83822 0.91454 0.92776 0.85989 0.84271 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.63 113.37 1.21 1.91 16 2 O -0.37 -12.00 10.57 -51.39 -0.54 -12.54 16 3 C 0.42 16.65 8.01 71.24 0.57 17.22 16 4 O -0.54 -26.24 16.06 21.95 0.35 -25.89 16 5 C 0.16 5.98 6.27 85.63 0.54 6.51 16 6 N -0.57 -26.98 2.04 -706.34 -1.44 -28.42 16 7 C -0.28 -15.21 9.55 84.03 0.80 -14.41 16 8 H 0.06 3.38 8.04 -2.91 -0.02 3.35 16 9 C 0.00 0.12 4.83 84.86 0.41 0.53 16 10 N -0.81 -44.66 8.04 21.65 0.17 -44.48 16 11 Si 0.89 45.92 29.68 68.60 2.04 47.95 16 12 H -0.31 -16.61 7.11 99.48 0.71 -15.91 16 13 H -0.30 -15.26 7.11 99.48 0.71 -14.56 16 14 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 15 C 0.14 6.53 5.56 86.38 0.48 7.01 16 16 C 0.06 2.52 6.25 71.98 0.45 2.97 16 17 O -0.32 -13.72 7.57 -148.98 -1.13 -14.85 16 18 C 0.09 3.13 6.06 71.24 0.43 3.56 16 19 C -0.11 -4.00 5.51 -19.85 -0.11 -4.11 16 20 C -0.07 -2.28 9.71 22.26 0.22 -2.06 16 21 C -0.21 -6.54 9.04 22.37 0.20 -6.34 16 22 C 0.11 3.46 6.69 22.51 0.15 3.61 16 23 O -0.34 -9.34 10.50 -92.48 -0.97 -10.31 16 24 C 0.02 0.36 9.81 113.37 1.11 1.47 16 25 C -0.17 -5.25 9.99 22.37 0.22 -5.03 16 26 C -0.07 -2.22 9.67 22.25 0.22 -2.01 16 27 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.05 1.33 8.00 -2.39 -0.02 1.31 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.10 3.55 8.05 -2.38 -0.02 3.53 16 31 H 0.11 3.44 7.82 -2.39 -0.02 3.42 16 32 H 0.24 13.40 8.31 -92.71 -0.77 12.63 16 33 H 0.03 1.45 8.13 -2.39 -0.02 1.43 16 34 H 0.08 4.48 5.18 -2.39 -0.01 4.47 16 35 H 0.03 1.18 7.89 -2.39 -0.02 1.17 16 36 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.05 1.52 8.05 -2.39 -0.02 1.50 16 38 H 0.05 1.49 8.09 -2.39 -0.02 1.47 16 39 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 40 H 0.14 3.60 6.30 -2.91 -0.02 3.58 16 41 H 0.07 1.07 7.66 -2.39 -0.02 1.05 16 42 H 0.05 1.03 7.66 -2.39 -0.02 1.02 16 43 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 45 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -70.45 379.30 6.35 -64.09 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.98 Total: 13.61 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 6.90 Total: 10.84 kcal Atomic # 7 Polarization: -71.64 SS G_CDS: -1.27 Total: -72.90 kcal Atomic # 8 Polarization: -61.30 SS G_CDS: -2.29 Total: -63.59 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.04 Total: 47.95 kcal Total: -70.45 6.35 -64.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610432330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.873 kcal (2) G-P(sol) polarization free energy of solvation -70.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds