Wall clock time and date at job start Tue Mar 31 2020 14:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99973 * 2 1 4 4 C 1.52999 * 109.47468 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47113 * 64.99397 * 4 3 2 6 6 C 1.46499 * 119.99847 * 269.72671 * 5 4 3 7 7 C 1.50701 * 109.46981 * 270.27378 * 6 5 4 8 8 H 1.07993 * 119.99819 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99615 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99942 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00232 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47387 * 89.99602 * 11 9 7 13 13 H 1.48503 * 109.46919 * 209.99656 * 11 9 7 14 14 H 1.48498 * 109.46841 * 329.99163 * 11 9 7 15 15 C 1.34774 * 119.99912 * 90.00407 * 5 4 3 16 16 O 1.21599 * 120.00178 * 359.72229 * 15 5 4 17 17 N 1.34782 * 119.99989 * 179.72732 * 15 5 4 18 18 C 1.40211 * 119.99662 * 174.94415 * 17 15 5 19 19 C 1.36790 * 120.39903 * 121.50054 * 18 17 15 20 20 C 1.50707 * 120.38060 * 359.97438 * 19 18 17 21 21 C 1.40212 * 119.24154 * 179.97438 * 19 18 17 22 22 C 1.35253 * 120.03152 * 359.97438 * 21 19 18 23 23 N 1.35959 * 120.82129 * 0.02562 * 22 21 19 24 24 C 1.46502 * 119.61774 * 180.02562 * 23 22 21 25 25 C 1.34672 * 120.76944 * 359.70449 * 23 22 21 26 26 O 1.22063 * 120.03395 * 180.30668 * 25 23 22 27 27 H 1.08994 * 109.47926 * 300.00596 * 1 2 3 28 28 H 1.09002 * 109.47111 * 60.00849 * 1 2 3 29 29 H 1.09001 * 109.47164 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47475 * 59.99378 * 3 2 1 31 31 H 1.09009 * 109.46853 * 299.99704 * 3 2 1 32 32 H 1.09001 * 109.46983 * 304.99547 * 4 3 2 33 33 H 1.08996 * 109.47430 * 184.99717 * 4 3 2 34 34 H 1.08996 * 109.47127 * 30.27861 * 6 5 4 35 35 H 1.09008 * 109.46817 * 150.27557 * 6 5 4 36 36 H 0.96998 * 119.99872 * 180.02562 * 10 9 7 37 37 H 0.96998 * 119.99600 * 354.93828 * 17 15 5 38 38 H 1.09005 * 109.47256 * 90.00201 * 20 19 18 39 39 H 1.09003 * 109.47072 * 209.99828 * 20 19 18 40 40 H 1.08995 * 109.46929 * 329.99913 * 20 19 18 41 41 H 1.07999 * 119.98779 * 179.97438 * 21 19 18 42 42 H 1.08000 * 119.59279 * 180.02562 * 22 21 19 43 43 H 1.09002 * 109.46920 * 359.97438 * 24 23 22 44 44 H 1.09002 * 109.47340 * 119.99061 * 24 23 22 45 45 H 1.08995 * 109.47267 * 240.00097 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.1121 -0.8921 -1.3382 7 6 5.5080 -1.2919 -0.9348 8 1 6.2226 -0.5369 -0.6422 9 6 5.8724 -2.6217 -0.9384 10 7 7.0905 -2.9706 -0.5859 11 14 4.6361 -3.9276 -1.4438 12 1 4.7274 -4.1553 -2.9084 13 1 4.9325 -5.1938 -0.7266 14 1 3.2657 -3.4720 -1.0980 15 6 4.2634 1.3328 -2.3200 16 8 4.1509 2.5414 -2.2474 17 7 4.6746 0.7621 -3.4696 18 6 4.8709 1.5503 -4.6125 19 6 6.0930 1.5881 -5.2257 20 6 7.2447 0.7833 -4.6803 21 6 6.2621 2.3841 -6.3675 22 6 5.2237 3.1031 -6.8513 23 7 4.0081 3.0669 -6.2433 24 6 2.9013 3.8558 -6.7901 25 6 3.8079 2.3093 -5.1480 26 8 2.7095 2.2825 -4.6162 27 1 -0.3635 0.5139 0.8898 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8465 0.8899 31 1 1.6885 1.8464 -0.8901 32 1 3.8507 0.5687 0.8428 33 1 3.9784 2.1766 0.0902 34 1 3.3916 -1.3648 -0.6708 35 1 3.9237 -1.2137 -2.3626 36 1 7.3469 -3.9061 -0.5887 37 1 4.8348 -0.1939 -3.5063 38 1 7.2491 -0.2040 -5.1424 39 1 8.1820 1.2930 -4.9034 40 1 7.1358 0.6788 -3.6009 41 1 7.2220 2.4232 -6.8610 42 1 5.3617 3.7135 -7.7314 43 1 3.2425 4.3978 -7.6721 44 1 2.0828 3.1910 -7.0660 45 1 2.5554 4.5659 -6.0390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610718211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:40 Heat of formation + Delta-G solvation = -57.674660 kcal Electronic energy + Delta-G solvation = -28925.137391 eV Core-core repulsion = 24944.408837 eV Total energy + Delta-G solvation = -3980.728555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.26910 -39.33740 -37.46254 -36.78366 -35.87515 -34.73567 -32.98965 -32.46228 -30.11961 -29.69525 -28.50434 -27.41793 -26.10591 -25.74450 -23.57503 -22.41767 -22.06613 -21.42145 -19.39069 -17.91070 -17.35847 -17.00754 -16.92486 -16.26109 -15.94645 -15.71887 -15.61585 -15.07604 -14.76311 -14.21761 -14.13602 -14.07956 -13.74362 -13.47602 -13.09696 -13.00042 -12.80459 -12.61160 -12.50649 -12.12360 -12.05648 -11.76431 -11.61515 -11.52055 -11.43400 -11.38156 -10.91617 -10.75594 -10.47028 -10.17036 -10.02912 -9.60606 -9.53093 -9.37672 -9.21248 -8.76154 -8.64790 -7.64835 -7.33871 -6.14940 -4.15537 0.97458 2.06659 2.67198 3.23421 3.32421 3.39346 3.48255 3.76067 4.09315 4.25053 4.34820 4.52586 4.60197 4.79585 4.98219 5.16086 5.17826 5.19899 5.34318 5.45081 5.49882 5.55108 5.68278 5.73374 5.76096 5.81354 5.85386 5.86897 5.90958 6.07327 6.15460 6.40316 6.46248 6.50546 6.59293 6.66764 6.95310 7.11925 7.33444 7.36119 7.51854 7.55168 7.83819 8.29680 8.37484 8.74911 8.92691 9.41312 9.49089 10.97442 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010524 B = 0.005329 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.933734 B = 5252.768804 C = 6968.607482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.046 3.954 4 C 0.143 3.857 5 N -0.600 5.600 6 C 0.213 3.787 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.077 3.923 10 N -0.892 5.892 11 Si 0.866 3.134 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.260 1.260 15 C 0.720 3.280 16 O -0.602 6.602 17 N -0.669 5.669 18 C 0.058 3.942 19 C -0.019 4.019 20 C -0.121 4.121 21 C -0.206 4.206 22 C 0.108 3.892 23 N -0.504 5.504 24 C 0.071 3.929 25 C 0.518 3.482 26 O -0.527 6.527 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.016 0.984 36 H 0.265 0.735 37 H 0.414 0.586 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.145 0.855 42 H 0.159 0.841 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.316 10.155 -12.176 16.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C -0.032 4.032 4 C 0.019 3.981 5 N -0.333 5.333 6 C 0.091 3.909 7 C -0.578 4.578 8 H 0.096 0.904 9 C -0.126 4.126 10 N -0.530 5.530 11 Si 0.692 3.308 12 H -0.201 1.201 13 H -0.210 1.210 14 H -0.184 1.184 15 C 0.423 3.577 16 O -0.482 6.482 17 N -0.322 5.322 18 C -0.041 4.041 19 C -0.025 4.025 20 C -0.178 4.178 21 C -0.230 4.230 22 C -0.018 4.018 23 N -0.218 5.218 24 C -0.071 4.071 25 C 0.316 3.684 26 O -0.407 6.407 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.255 0.745 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.163 0.837 42 H 0.176 0.824 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.972 10.641 -11.657 16.875 hybrid contribution -0.615 -1.102 -0.371 1.316 sum -6.587 9.538 -12.028 16.704 Atomic orbital electron populations 1.22662 0.82276 1.02135 0.99312 1.87993 1.18626 1.27939 1.95256 1.23109 0.95514 0.84653 0.99943 1.21199 0.90660 0.99527 0.86753 1.46879 1.68261 1.07952 1.10200 1.19737 0.98185 0.76144 0.96806 1.21487 0.96104 0.93690 1.46537 0.90355 1.24847 0.94981 0.98226 0.94526 1.69900 1.18028 1.17531 1.47549 0.86990 0.82901 0.81796 0.79085 1.20065 1.20984 1.18389 1.15671 0.77230 0.84763 0.80063 1.90807 1.61163 1.12639 1.83561 1.42249 1.71990 1.10955 1.06958 1.17706 0.92185 1.01746 0.92502 1.20305 0.93359 0.94500 0.94367 1.20855 0.94756 0.98969 1.03188 1.20376 0.99538 1.03236 0.99864 1.21806 0.84299 0.98384 0.97301 1.45317 1.10932 1.39781 1.25738 1.22013 0.89497 0.96081 0.99529 1.17148 0.89857 0.81354 0.80041 1.90950 1.25564 1.65453 1.58727 0.94669 0.94571 0.90136 0.93217 0.92987 0.89381 0.89274 0.93261 0.96614 0.92517 0.74542 0.90282 0.91100 0.89739 0.83694 0.82407 0.89697 0.90542 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.38 -7.18 9.55 -35.23 -0.34 -7.51 16 3 C 0.05 0.82 6.28 37.16 0.23 1.06 16 4 C 0.14 2.86 5.81 -4.04 -0.02 2.84 16 5 N -0.60 -13.69 2.42 -180.80 -0.44 -14.13 16 6 C 0.21 5.10 3.77 -5.19 -0.02 5.08 16 7 C -0.54 -14.49 9.94 -34.44 -0.34 -14.84 16 8 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 9 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 10 N -0.89 -25.94 13.96 55.43 0.77 -25.17 16 11 Si 0.87 20.44 27.47 -169.99 -4.67 15.77 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 15 C 0.72 16.96 7.60 -86.92 -0.66 16.30 16 16 O -0.60 -15.36 14.90 -7.37 -0.11 -15.47 16 17 N -0.67 -14.20 3.98 -14.07 -0.06 -14.26 16 18 C 0.06 1.09 5.69 -83.43 -0.47 0.62 16 19 C -0.02 -0.28 5.90 -104.40 -0.62 -0.90 16 20 C -0.12 -1.73 9.78 36.01 0.35 -1.38 16 21 C -0.21 -2.26 9.70 -39.90 -0.39 -2.64 16 22 C 0.11 1.06 10.30 -16.79 -0.17 0.89 16 23 N -0.50 -6.71 2.99 -126.95 -0.38 -7.09 16 24 C 0.07 0.68 10.06 59.85 0.60 1.28 16 25 C 0.52 9.73 6.97 -15.19 -0.11 9.63 16 26 O -0.53 -11.89 15.60 -7.79 -0.12 -12.01 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 1.03 8.14 -51.92 -0.42 0.60 16 32 H 0.09 1.73 8.07 -51.93 -0.42 1.31 16 33 H 0.09 1.74 7.42 -51.93 -0.39 1.35 16 34 H 0.05 1.22 6.19 -51.93 -0.32 0.90 16 35 H 0.02 0.38 5.87 -51.92 -0.30 0.07 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.41 8.66 6.63 -40.82 -0.27 8.39 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 40 H 0.08 1.50 7.47 -51.93 -0.39 1.11 16 41 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.16 0.78 7.82 -52.49 -0.41 0.37 16 43 H 0.08 0.44 7.72 -51.93 -0.40 0.04 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -37.10 374.76 -7.00 -44.10 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.72 Total: 8.58 kcal Atomic # 6 Polarization: 22.13 SS G_CDS: -0.60 Total: 21.53 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.10 Total: -60.65 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.57 Total: -34.99 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.77 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.10 -7.00 -44.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610718211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.570 kcal (2) G-P(sol) polarization free energy of solvation -37.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds