Wall clock time and date at job start Tue Mar 31 2020 14:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 114.00298 * 2 1 4 4 C 1.53008 * 109.47367 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.46846 * 65.00103 * 4 3 2 6 6 C 1.46498 * 120.00088 * 270.00175 * 5 4 3 7 7 C 1.50699 * 109.46894 * 270.00158 * 6 5 4 8 8 H 1.08003 * 119.99854 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00240 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00353 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99768 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.46964 * 90.00273 * 11 9 7 13 13 H 1.48499 * 109.46999 * 210.00170 * 11 9 7 14 14 H 1.48498 * 109.47201 * 330.00516 * 11 9 7 15 15 C 1.34778 * 120.00013 * 90.00078 * 5 4 3 16 16 O 1.21591 * 120.00053 * 359.97438 * 15 5 4 17 17 N 1.34776 * 119.99892 * 179.97438 * 15 5 4 18 18 C 1.40194 * 119.99754 * 184.30245 * 17 15 5 19 19 C 1.39364 * 120.42191 * 325.64700 * 18 17 15 20 20 C 1.38321 * 118.42345 * 180.27797 * 19 18 17 21 21 C 1.38897 * 119.18923 * 359.97438 * 20 19 18 22 22 O 1.35757 * 119.61607 * 179.97438 * 21 20 19 23 23 C 1.42896 * 117.00493 * 180.02562 * 22 21 20 24 24 N 1.32209 * 120.77860 * 0.02562 * 21 20 19 25 25 C 1.31956 * 121.71787 * 359.97438 * 24 21 20 26 26 C 1.50689 * 119.63291 * 180.02562 * 25 24 21 27 27 H 1.08996 * 109.46461 * 60.00238 * 1 2 3 28 28 H 1.09001 * 109.46791 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46963 * 300.00321 * 1 2 3 30 30 H 1.09006 * 109.47100 * 60.00209 * 3 2 1 31 31 H 1.09000 * 109.47310 * 299.99998 * 3 2 1 32 32 H 1.08998 * 109.46762 * 305.00174 * 4 3 2 33 33 H 1.08998 * 109.47029 * 185.00023 * 4 3 2 34 34 H 1.08995 * 109.47316 * 29.99953 * 6 5 4 35 35 H 1.08998 * 109.47023 * 150.00095 * 6 5 4 36 36 H 0.97006 * 120.00046 * 180.02562 * 10 9 7 37 37 H 0.96996 * 119.99983 * 4.30236 * 17 15 5 38 38 H 1.07997 * 120.78515 * 0.25511 * 19 18 17 39 39 H 1.08010 * 120.40513 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47565 * 180.02562 * 23 22 21 41 41 H 1.09004 * 109.46782 * 300.00048 * 23 22 21 42 42 H 1.09000 * 109.47372 * 59.99279 * 23 22 21 43 43 H 1.09003 * 109.47331 * 269.97655 * 26 25 24 44 44 H 1.09005 * 109.47353 * 29.97689 * 26 25 24 45 45 H 1.08999 * 109.47732 * 149.98072 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1062 -0.8926 -1.3403 7 6 5.5017 -1.2982 -0.9412 8 1 6.2203 -0.5462 -0.6505 9 6 5.8613 -2.6292 -0.9483 10 7 7.0789 -2.9833 -0.5995 11 14 4.6186 -3.9299 -1.4519 12 1 4.7044 -4.1553 -2.9171 13 1 4.9127 -5.1983 -0.7378 14 1 3.2509 -3.4699 -1.1011 15 6 4.2634 1.3328 -2.3200 16 8 4.1554 2.5417 -2.2459 17 7 4.6697 0.7618 -3.4712 18 6 5.0543 1.5647 -4.5543 19 6 4.4203 2.7833 -4.7896 20 6 4.8287 3.5395 -5.8733 21 6 5.8502 3.0633 -6.6852 22 8 6.2575 3.7982 -7.7515 23 6 7.3116 3.2553 -8.5490 24 7 6.4298 1.9022 -6.4324 25 6 6.0666 1.1540 -5.4079 26 6 6.7598 -0.1614 -5.1632 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6887 1.8463 0.8901 31 1 1.6887 1.8463 -0.8900 32 1 3.8508 0.5684 0.8427 33 1 3.9786 2.1764 0.0902 34 1 3.3858 -1.3632 -0.6714 35 1 3.9138 -1.2122 -2.3645 36 1 7.3320 -3.9197 -0.6049 37 1 4.6961 -0.2045 -3.5504 38 1 3.6286 3.1287 -4.1413 39 1 4.3597 4.4890 -6.0852 40 1 7.5398 3.9408 -9.3652 41 1 8.1996 3.1171 -7.9321 42 1 7.0000 2.2940 -8.9576 43 1 6.2344 -0.9538 -5.6963 44 1 7.7878 -0.1025 -5.5210 45 1 6.7588 -0.3796 -4.0953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610745349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:10 Heat of formation + Delta-G solvation = -61.053976 kcal Electronic energy + Delta-G solvation = -28225.051537 eV Core-core repulsion = 24244.176445 eV Total energy + Delta-G solvation = -3980.875093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.82148 -39.65452 -38.02045 -37.45231 -35.20050 -34.46670 -32.79412 -32.59434 -30.63637 -29.47470 -28.12586 -27.63109 -26.35188 -25.84009 -23.40720 -22.59926 -22.29072 -21.79620 -19.44522 -18.20402 -17.76347 -17.11154 -16.81724 -16.45888 -16.05844 -15.88224 -15.78632 -15.14625 -14.74929 -14.35255 -14.28463 -14.19583 -13.90279 -13.70413 -13.42374 -13.06390 -12.63699 -12.35150 -12.30419 -12.27227 -12.09945 -12.01164 -11.77348 -11.66759 -11.60267 -11.07759 -11.04255 -10.90140 -10.62144 -10.28946 -10.17969 -9.78357 -9.64060 -9.52828 -9.43363 -9.06245 -8.74788 -7.94819 -7.45574 -6.23650 -4.26035 1.30528 1.51873 3.05542 3.15239 3.25565 3.28828 3.29838 3.60199 3.99994 4.06821 4.25132 4.35445 4.44849 4.99505 5.07076 5.20449 5.22942 5.27727 5.32960 5.36320 5.41933 5.53435 5.54519 5.58631 5.61023 5.71709 5.71874 5.86028 5.88727 5.94932 6.00070 6.26510 6.30018 6.36433 6.42806 6.54121 6.74836 7.00452 7.10151 7.32136 7.40560 7.41952 7.57763 8.04783 8.22300 8.48487 8.82393 9.05551 9.35634 10.88566 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.004334 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.059728 B = 6459.455025 C = 8252.314257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.046 3.954 4 C 0.140 3.860 5 N -0.595 5.595 6 C 0.213 3.787 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.079 3.921 10 N -0.888 5.888 11 Si 0.865 3.135 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.260 1.260 15 C 0.710 3.290 16 O -0.606 6.606 17 N -0.672 5.672 18 C 0.098 3.902 19 C -0.046 4.046 20 C -0.179 4.179 21 C 0.293 3.707 22 O -0.313 6.313 23 C 0.042 3.958 24 N -0.522 5.522 25 C 0.140 3.860 26 C -0.110 4.110 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.015 0.985 36 H 0.266 0.734 37 H 0.416 0.584 38 H 0.158 0.842 39 H 0.139 0.861 40 H 0.090 0.910 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.703 7.662 -7.955 13.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.032 4.032 4 C 0.015 3.985 5 N -0.327 5.327 6 C 0.091 3.909 7 C -0.583 4.583 8 H 0.097 0.903 9 C -0.125 4.125 10 N -0.526 5.526 11 Si 0.692 3.308 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.184 1.184 15 C 0.413 3.587 16 O -0.487 6.487 17 N -0.322 5.322 18 C -0.001 4.001 19 C -0.073 4.073 20 C -0.200 4.200 21 C 0.113 3.887 22 O -0.220 6.220 23 C -0.053 4.053 24 N -0.246 5.246 25 C 0.001 3.999 26 C -0.168 4.168 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.033 0.967 36 H 0.076 0.924 37 H 0.256 0.744 38 H 0.176 0.824 39 H 0.157 0.843 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.978 8.082 -8.412 13.593 hybrid contribution -1.115 -1.016 0.223 1.525 sum -8.094 7.066 -8.189 13.509 Atomic orbital electron populations 1.22683 0.82087 1.02314 0.99368 1.88010 1.18755 1.27815 1.95264 1.23104 0.95355 0.84751 1.00023 1.21284 0.90702 0.99809 0.86657 1.46998 1.67608 1.08234 1.09884 1.19786 0.98605 0.75704 0.96779 1.21423 0.95889 0.93754 1.47216 0.90339 1.24851 0.94999 0.98212 0.94441 1.69891 1.18112 1.17535 1.47015 0.87003 0.82719 0.81898 0.79207 1.19918 1.20884 1.18427 1.15783 0.77806 0.84878 0.80260 1.90798 1.61670 1.12416 1.83788 1.42675 1.68614 1.10239 1.10666 1.18210 0.96763 0.94311 0.90800 1.21617 0.98353 0.92827 0.94526 1.20912 0.99760 1.02868 0.96438 1.19690 0.92265 0.88404 0.88366 1.86212 1.53170 1.45183 1.37482 1.22771 0.89142 0.99546 0.93866 1.67056 1.30407 1.06102 1.21069 1.20738 0.91782 0.96824 0.90545 1.20780 1.00701 0.91209 1.04078 0.94596 0.90010 0.94512 0.92909 0.93213 0.89062 0.88946 0.92977 0.96699 0.92358 0.74375 0.82417 0.84308 0.89118 0.92484 0.92547 0.90440 0.90304 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.10 9.53 -35.23 -0.34 -6.44 16 3 C 0.05 0.68 6.28 37.16 0.23 0.91 16 4 C 0.14 2.40 5.81 -4.04 -0.02 2.38 16 5 N -0.59 -11.79 2.42 -180.81 -0.44 -12.22 16 6 C 0.21 4.57 3.85 -5.19 -0.02 4.55 16 7 C -0.54 -13.82 9.94 -34.44 -0.34 -14.16 16 8 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 9 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 10 N -0.89 -25.08 13.96 55.43 0.77 -24.31 16 11 Si 0.87 19.25 27.47 -169.99 -4.67 14.58 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 15 C 0.71 14.22 8.14 -86.92 -0.71 13.51 16 16 O -0.61 -12.71 13.37 5.29 0.07 -12.64 16 17 N -0.67 -12.37 4.64 -14.09 -0.07 -12.43 16 18 C 0.10 1.71 6.31 -83.46 -0.53 1.18 16 19 C -0.05 -0.75 8.81 -39.13 -0.34 -1.09 16 20 C -0.18 -2.67 10.03 -39.31 -0.39 -3.06 16 21 C 0.29 4.58 7.49 -17.15 -0.13 4.45 16 22 O -0.31 -4.38 10.48 -18.98 -0.20 -4.58 16 23 C 0.04 0.46 10.38 101.05 1.05 1.51 16 24 N -0.52 -8.55 9.12 -9.41 -0.09 -8.64 16 25 C 0.14 2.35 6.80 -82.39 -0.56 1.79 16 26 C -0.11 -1.69 9.63 36.00 0.35 -1.34 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.59 8.07 -51.93 -0.42 1.18 16 33 H 0.09 1.54 7.42 -51.93 -0.39 1.16 16 34 H 0.05 1.16 6.17 -51.93 -0.32 0.84 16 35 H 0.02 0.31 5.73 -51.93 -0.30 0.02 16 36 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.42 7.51 5.54 -40.82 -0.23 7.28 16 38 H 0.16 2.65 6.27 -52.49 -0.33 2.32 16 39 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.64 8.10 -51.93 -0.42 0.21 16 42 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.09 1.57 7.15 -51.93 -0.37 1.20 16 LS Contribution 373.80 15.07 5.63 5.63 Total: -1.00 -30.55 373.80 -6.30 -36.85 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -6.59 Total: 10.12 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: -0.40 Total: 14.08 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: 0.18 Total: -57.61 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.46 Total: -23.66 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.67 Total: 14.58 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.55 -6.30 -36.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610745349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.206 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds