Wall clock time and date at job start Tue Mar 31 2020 14:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 114.00298 * 2 1 4 4 C 1.53008 * 109.47367 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.46846 * 65.00103 * 4 3 2 6 6 C 1.46498 * 120.00088 * 270.00175 * 5 4 3 7 7 C 1.50699 * 109.46894 * 270.00158 * 6 5 4 8 8 H 1.08003 * 119.99854 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00240 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00353 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99768 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.46964 * 90.00273 * 11 9 7 13 13 H 1.48499 * 109.46999 * 210.00170 * 11 9 7 14 14 H 1.48498 * 109.47201 * 330.00516 * 11 9 7 15 15 C 1.34778 * 120.00013 * 90.00078 * 5 4 3 16 16 O 1.21591 * 120.00053 * 359.97438 * 15 5 4 17 17 N 1.34776 * 119.99892 * 179.97438 * 15 5 4 18 18 C 1.40194 * 119.99754 * 184.30245 * 17 15 5 19 19 C 1.39364 * 120.42191 * 325.64700 * 18 17 15 20 20 C 1.38321 * 118.42345 * 180.27797 * 19 18 17 21 21 C 1.38897 * 119.18923 * 359.97438 * 20 19 18 22 22 O 1.35757 * 119.61607 * 179.97438 * 21 20 19 23 23 C 1.42896 * 117.00493 * 180.02562 * 22 21 20 24 24 N 1.32209 * 120.77860 * 0.02562 * 21 20 19 25 25 C 1.31956 * 121.71787 * 359.97438 * 24 21 20 26 26 C 1.50689 * 119.63291 * 180.02562 * 25 24 21 27 27 H 1.08996 * 109.46461 * 60.00238 * 1 2 3 28 28 H 1.09001 * 109.46791 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46963 * 300.00321 * 1 2 3 30 30 H 1.09006 * 109.47100 * 60.00209 * 3 2 1 31 31 H 1.09000 * 109.47310 * 299.99998 * 3 2 1 32 32 H 1.08998 * 109.46762 * 305.00174 * 4 3 2 33 33 H 1.08998 * 109.47029 * 185.00023 * 4 3 2 34 34 H 1.08995 * 109.47316 * 29.99953 * 6 5 4 35 35 H 1.08998 * 109.47023 * 150.00095 * 6 5 4 36 36 H 0.97006 * 120.00046 * 180.02562 * 10 9 7 37 37 H 0.96996 * 119.99983 * 4.30236 * 17 15 5 38 38 H 1.07997 * 120.78515 * 0.25511 * 19 18 17 39 39 H 1.08010 * 120.40513 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47565 * 180.02562 * 23 22 21 41 41 H 1.09004 * 109.46782 * 300.00048 * 23 22 21 42 42 H 1.09000 * 109.47372 * 59.99279 * 23 22 21 43 43 H 1.09003 * 109.47331 * 269.97655 * 26 25 24 44 44 H 1.09005 * 109.47353 * 29.97689 * 26 25 24 45 45 H 1.08999 * 109.47732 * 149.98072 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1062 -0.8926 -1.3403 7 6 5.5017 -1.2982 -0.9412 8 1 6.2203 -0.5462 -0.6505 9 6 5.8613 -2.6292 -0.9483 10 7 7.0789 -2.9833 -0.5995 11 14 4.6186 -3.9299 -1.4519 12 1 4.7044 -4.1553 -2.9171 13 1 4.9127 -5.1983 -0.7378 14 1 3.2509 -3.4699 -1.1011 15 6 4.2634 1.3328 -2.3200 16 8 4.1554 2.5417 -2.2459 17 7 4.6697 0.7618 -3.4712 18 6 5.0543 1.5647 -4.5543 19 6 4.4203 2.7833 -4.7896 20 6 4.8287 3.5395 -5.8733 21 6 5.8502 3.0633 -6.6852 22 8 6.2575 3.7982 -7.7515 23 6 7.3116 3.2553 -8.5490 24 7 6.4298 1.9022 -6.4324 25 6 6.0666 1.1540 -5.4079 26 6 6.7598 -0.1614 -5.1632 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6887 1.8463 0.8901 31 1 1.6887 1.8463 -0.8900 32 1 3.8508 0.5684 0.8427 33 1 3.9786 2.1764 0.0902 34 1 3.3858 -1.3632 -0.6714 35 1 3.9138 -1.2122 -2.3645 36 1 7.3320 -3.9197 -0.6049 37 1 4.6961 -0.2045 -3.5504 38 1 3.6286 3.1287 -4.1413 39 1 4.3597 4.4890 -6.0852 40 1 7.5398 3.9408 -9.3652 41 1 8.1996 3.1171 -7.9321 42 1 7.0000 2.2940 -8.9576 43 1 6.2344 -0.9538 -5.6963 44 1 7.7878 -0.1025 -5.5210 45 1 6.7588 -0.3796 -4.0953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610745349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:09 Heat of formation + Delta-G solvation = -82.359036 kcal Electronic energy + Delta-G solvation = -28225.975394 eV Core-core repulsion = 24244.176445 eV Total energy + Delta-G solvation = -3981.798949 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.15560 -41.03880 -39.19563 -38.62701 -36.77236 -35.88297 -34.55985 -34.01780 -31.96559 -30.92600 -29.38976 -29.08216 -27.42701 -26.94696 -24.75369 -24.35338 -23.56967 -23.06741 -20.92215 -19.57288 -19.08843 -18.96045 -18.30128 -17.68764 -17.30777 -17.00087 -16.98788 -16.60212 -16.07857 -15.99624 -15.52008 -15.35675 -15.23972 -14.95549 -14.86802 -14.39328 -14.34223 -13.85646 -13.56834 -13.55456 -13.40548 -13.21163 -13.13013 -12.75226 -12.71766 -12.67170 -12.48616 -12.23713 -12.04683 -11.92354 -11.66893 -11.46798 -11.26405 -10.78301 -10.74801 -10.56441 -10.38357 -9.51249 -8.80827 -8.26549 -6.34098 0.04613 0.23492 1.40828 1.45108 1.54842 1.64259 2.09593 2.19065 2.37068 2.73268 2.91341 2.94525 3.08120 3.19168 3.72040 3.98078 4.11306 4.16636 4.24403 4.40715 4.46852 4.48396 4.50001 4.55842 4.57110 4.59844 4.63884 4.67704 4.68249 4.73443 4.83202 4.85989 4.93458 5.01875 5.05335 5.14747 5.25882 5.45520 5.56116 5.66833 5.99890 6.23199 6.25723 6.32078 6.70001 6.78965 6.88932 7.31241 7.51684 8.89225 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.004334 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.059728 B = 6459.455025 C = 8252.314257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.056 3.944 4 C 0.133 3.867 5 N -0.600 5.600 6 C 0.227 3.773 7 C -0.540 4.540 8 H 0.030 0.970 9 C 0.027 3.973 10 N -0.938 5.938 11 Si 0.933 3.067 12 H -0.257 1.257 13 H -0.288 1.288 14 H -0.244 1.244 15 C 0.705 3.295 16 O -0.618 6.618 17 N -0.669 5.669 18 C 0.075 3.925 19 C -0.048 4.048 20 C -0.173 4.173 21 C 0.289 3.711 22 O -0.315 6.315 23 C 0.037 3.963 24 N -0.528 5.528 25 C 0.135 3.865 26 C -0.104 4.104 27 H 0.042 0.958 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.031 0.969 36 H 0.268 0.732 37 H 0.416 0.584 38 H 0.154 0.846 39 H 0.166 0.834 40 H 0.125 0.875 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.558 7.890 -9.417 15.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C -0.021 4.021 4 C 0.010 3.990 5 N -0.333 5.333 6 C 0.104 3.896 7 C -0.578 4.578 8 H 0.049 0.951 9 C -0.173 4.173 10 N -0.577 5.577 11 Si 0.755 3.245 12 H -0.181 1.181 13 H -0.214 1.214 14 H -0.167 1.167 15 C 0.408 3.592 16 O -0.501 6.501 17 N -0.319 5.319 18 C -0.023 4.023 19 C -0.076 4.076 20 C -0.194 4.194 21 C 0.109 3.891 22 O -0.223 6.223 23 C -0.058 4.058 24 N -0.253 5.253 25 C -0.004 4.004 26 C -0.162 4.162 27 H 0.061 0.939 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.256 0.744 38 H 0.171 0.829 39 H 0.183 0.817 40 H 0.143 0.857 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.104 0.896 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.847 8.343 -9.894 15.677 hybrid contribution -0.452 -0.959 0.634 1.236 sum -9.300 7.383 -9.260 15.058 Atomic orbital electron populations 1.22878 0.79958 1.03410 1.00647 1.87947 1.21132 1.28314 1.95522 1.22951 0.93207 0.84777 1.01172 1.21442 0.92904 0.99364 0.85333 1.47051 1.67865 1.07611 1.10739 1.19508 0.95846 0.76874 0.97324 1.21498 0.96885 0.92860 1.46576 0.95116 1.25674 0.96766 1.00525 0.94305 1.70047 1.20553 1.18108 1.49018 0.85933 0.80585 0.78338 0.79599 1.18119 1.21354 1.16710 1.15916 0.77876 0.84830 0.80626 1.90774 1.62368 1.12818 1.84111 1.42593 1.68397 1.10273 1.10602 1.18400 0.97871 0.95009 0.91048 1.21628 0.98305 0.92647 0.94997 1.21151 0.99296 1.03486 0.95457 1.19957 0.92140 0.88202 0.88780 1.86222 1.53944 1.45072 1.37041 1.23038 0.87946 1.00644 0.94163 1.67084 1.30646 1.06552 1.21012 1.20866 0.91679 0.97271 0.90565 1.20724 1.01355 0.91383 1.02701 0.93925 0.89091 0.92579 0.89939 0.93681 0.89919 0.88913 0.92918 0.95113 0.92319 0.74426 0.82884 0.81664 0.85670 0.93043 0.92544 0.88564 0.89599 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -12.45 9.53 -148.98 -1.42 -13.87 16 3 C 0.06 1.60 6.28 71.98 0.45 2.05 16 4 C 0.13 4.58 5.81 86.38 0.50 5.08 16 5 N -0.60 -23.93 2.42 -844.21 -2.04 -25.97 16 6 C 0.23 9.69 3.85 85.63 0.33 10.02 16 7 C -0.54 -28.10 9.94 25.60 0.25 -27.85 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 9 C 0.03 1.42 5.47 84.66 0.46 1.88 16 10 N -0.94 -54.45 13.96 21.45 0.30 -54.15 16 11 Si 0.93 39.22 27.47 68.60 1.88 41.10 16 12 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 13 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 14 H -0.24 -9.56 6.54 99.48 0.65 -8.91 16 15 C 0.71 28.46 8.14 179.05 1.46 29.92 16 16 O -0.62 -26.08 13.37 -4.00 -0.05 -26.13 16 17 N -0.67 -24.79 4.64 -316.76 -1.47 -26.26 16 18 C 0.07 2.60 6.31 38.17 0.24 2.85 16 19 C -0.05 -1.56 8.81 22.56 0.20 -1.36 16 20 C -0.17 -4.90 10.03 22.45 0.23 -4.67 16 21 C 0.29 8.62 7.49 84.79 0.63 9.26 16 22 O -0.32 -8.16 10.48 -90.83 -0.95 -9.12 16 23 C 0.04 0.71 10.38 113.37 1.18 1.89 16 24 N -0.53 -16.78 9.12 -296.52 -2.70 -19.48 16 25 C 0.14 4.47 6.80 42.63 0.29 4.76 16 26 C -0.10 -3.18 9.63 71.23 0.69 -2.49 16 27 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 2.94 8.07 -2.39 -0.02 2.92 16 33 H 0.09 3.13 7.42 -2.39 -0.02 3.12 16 34 H 0.05 2.28 6.17 -2.39 -0.01 2.27 16 35 H 0.03 1.24 5.73 -2.39 -0.01 1.22 16 36 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 37 H 0.42 15.05 5.54 -92.71 -0.51 14.54 16 38 H 0.15 5.08 6.27 -2.91 -0.02 5.06 16 39 H 0.17 3.70 8.06 -2.91 -0.02 3.68 16 40 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.05 1.06 8.10 -2.38 -0.02 1.04 16 42 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 43 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 45 H 0.07 2.39 7.15 -2.39 -0.02 2.38 16 Total: -1.00 -66.68 373.80 2.14 -64.54 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: 0.44 Total: 36.19 kcal Atomic # 6 Polarization: 25.00 SS G_CDS: 8.16 Total: 33.16 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -5.92 Total: -125.86 kcal Atomic # 8 Polarization: -46.70 SS G_CDS: -2.42 Total: -49.12 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 1.88 Total: 41.10 kcal Total: -66.68 2.14 -64.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610745349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.823 kcal (2) G-P(sol) polarization free energy of solvation -66.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds