Wall clock time and date at job start Tue Mar 31 2020 13:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36317 * 126.27865 * 2 1 4 4 N 1.30140 * 109.97730 * 179.97438 * 3 2 1 5 5 C 1.35477 * 109.44344 * 359.73620 * 4 3 2 6 6 C 1.37197 * 126.27515 * 179.97438 * 2 1 3 7 7 N 1.32895 * 134.92531 * 0.02562 * 6 2 1 8 8 C 1.31646 * 120.64078 * 179.97438 * 7 6 2 9 9 N 1.32041 * 122.46497 * 359.97438 * 8 7 6 10 10 C 1.32911 * 121.19377 * 0.02562 * 9 8 7 11 11 N 1.38386 * 120.77641 * 180.02562 * 10 9 8 12 12 C 1.46499 * 119.99745 * 359.72890 * 11 10 9 13 13 H 1.08999 * 109.47480 * 35.27538 * 12 11 10 14 14 C 1.52999 * 109.47493 * 155.27851 * 12 11 10 15 15 C 1.50706 * 109.46603 * 295.00080 * 14 12 11 16 16 H 1.08003 * 119.99914 * 359.97438 * 15 14 12 17 17 C 1.37879 * 119.99843 * 179.97438 * 15 14 12 18 18 N 1.31512 * 120.00198 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99798 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47217 * 60.00264 * 19 17 15 21 21 H 1.48501 * 109.46943 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47108 * 299.99988 * 19 17 15 23 23 C 1.50703 * 109.47256 * 275.27682 * 12 11 10 24 24 C 1.38242 * 119.99836 * 319.72549 * 23 12 11 25 25 C 1.38233 * 119.99852 * 179.81099 * 24 23 12 26 26 C 1.38241 * 119.99823 * 0.39897 * 25 24 23 27 27 C 1.38227 * 120.00337 * 359.85584 * 26 25 24 28 28 C 1.38234 * 120.00383 * 140.00388 * 23 12 11 29 29 H 1.09001 * 109.47228 * 270.00187 * 1 2 3 30 30 H 1.08997 * 109.47372 * 30.00086 * 1 2 3 31 31 H 1.08998 * 109.47290 * 150.00502 * 1 2 3 32 32 H 1.08003 * 125.01091 * 359.96190 * 3 2 1 33 33 H 1.08004 * 118.76341 * 180.02562 * 8 7 6 34 34 H 0.97001 * 120.00406 * 180.02562 * 11 10 9 35 35 H 1.08998 * 109.47257 * 54.99513 * 14 12 11 36 36 H 1.08993 * 109.47436 * 175.00131 * 14 12 11 37 37 H 0.96992 * 120.00089 * 179.97438 * 18 17 15 38 38 H 1.07995 * 119.99996 * 0.02562 * 24 23 12 39 39 H 1.08000 * 119.99735 * 180.23209 * 25 24 23 40 40 H 1.08001 * 119.99396 * 179.83514 * 26 25 24 41 41 H 1.07998 * 120.00107 * 179.97438 * 27 26 25 42 42 H 1.08005 * 119.99831 * 359.97370 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2716 1.0989 0.0000 4 7 3.5207 0.7336 0.0005 5 6 3.5949 -0.6191 0.0068 6 6 2.2767 -1.1061 0.0005 7 7 2.0734 -2.4194 0.0007 8 6 3.0901 -3.2557 0.0007 9 7 4.3452 -2.8456 0.0000 10 6 4.6464 -1.5510 -0.0002 11 7 5.9649 -1.1308 -0.0014 12 6 7.0481 -2.1172 0.0035 13 1 6.7521 -2.9848 -0.5862 14 6 8.3077 -1.4947 -0.6019 15 6 8.0631 -1.1784 -2.0549 16 1 7.1051 -1.3997 -2.5019 17 6 9.0622 -0.6064 -2.8136 18 7 10.2285 -0.3365 -2.2692 19 14 8.7592 -0.2151 -4.6149 20 1 7.6291 0.7413 -4.7303 21 1 9.9818 0.3893 -5.2025 22 1 8.4262 -1.4652 -5.3438 23 6 7.3308 -2.5458 1.4204 24 6 7.3236 -1.6118 2.4395 25 6 7.5791 -2.0056 3.7397 26 6 7.8499 -3.3320 4.0196 27 6 7.8623 -4.2650 2.9999 28 6 7.6030 -3.8719 1.7002 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3634 -0.8900 -0.5137 32 1 1.9251 2.1219 -0.0006 33 1 2.8900 -4.3170 0.0004 34 1 6.1720 -0.1832 -0.0011 35 1 8.5529 -0.5773 -0.0667 36 1 9.1368 -2.1972 -0.5175 37 1 10.9315 0.0655 -2.8031 38 1 7.1150 -0.5751 2.2204 39 1 7.5698 -1.2765 4.5364 40 1 8.0521 -3.6391 5.0351 41 1 8.0742 -5.3012 3.2185 42 1 7.6126 -4.6010 0.9034 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610969447.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:50 Heat of formation + Delta-G solvation = 127.579437 kcal Electronic energy + Delta-G solvation = -26597.089819 eV Core-core repulsion = 22963.996156 eV Total energy + Delta-G solvation = -3633.093663 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.26465 -39.34482 -38.66438 -36.31354 -34.31233 -33.12063 -32.14358 -31.07248 -30.44992 -29.24554 -28.32539 -27.23211 -24.92805 -23.89700 -23.06157 -22.23125 -21.90549 -20.61103 -19.99532 -18.28980 -17.69164 -16.77335 -16.57172 -16.13376 -16.11188 -15.20970 -14.82075 -14.70031 -14.45318 -14.32858 -14.09235 -13.84975 -13.38399 -13.12399 -12.92419 -12.89296 -12.58691 -12.52820 -12.08288 -11.61272 -11.41998 -11.30768 -11.09909 -10.88156 -10.68995 -10.57532 -10.42993 -10.06380 -9.77528 -9.41420 -9.15950 -9.02095 -8.72447 -8.49915 -8.42262 -8.16720 -7.35977 -6.06111 -4.09314 1.15972 1.71544 1.80718 1.83355 2.38670 2.90261 3.31889 3.35989 3.39658 3.57206 4.22398 4.25303 4.27458 4.34532 4.43062 4.52648 4.82566 4.95268 4.98214 5.20433 5.25912 5.28672 5.30616 5.32090 5.39908 5.56450 5.88601 5.93934 5.95219 6.04430 6.16662 6.37046 6.44511 6.58345 6.65889 6.87399 6.87970 6.90879 7.08429 7.22483 7.34754 7.43495 7.50913 7.72201 7.89345 7.91647 8.07402 8.27471 8.69756 8.95688 9.55639 11.04434 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007975 B = 0.005378 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3510.269099 B = 5205.212091 C = 7668.764967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.481 5.481 3 C 0.229 3.771 4 N -0.452 5.452 5 C -0.116 4.116 6 C 0.299 3.701 7 N -0.582 5.582 8 C 0.365 3.635 9 N -0.589 5.589 10 C 0.516 3.484 11 N -0.653 5.653 12 C 0.187 3.813 13 H 0.095 0.905 14 C 0.022 3.978 15 C -0.520 4.520 16 H 0.056 0.944 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.069 4.069 24 C -0.108 4.108 25 C -0.125 4.125 26 C -0.135 4.135 27 C -0.124 4.124 28 C -0.104 4.104 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.217 0.783 33 H 0.197 0.803 34 H 0.419 0.581 35 H 0.024 0.976 36 H 0.037 0.963 37 H 0.262 0.738 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.725 -1.449 9.091 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.175 5.175 3 C -0.058 4.058 4 N -0.170 5.170 5 C -0.244 4.244 6 C 0.060 3.940 7 N -0.310 5.310 8 C 0.074 3.926 9 N -0.319 5.319 10 C 0.262 3.738 11 N -0.278 5.278 12 C 0.082 3.918 13 H 0.113 0.887 14 C -0.015 4.015 15 C -0.558 4.558 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.071 4.071 24 C -0.126 4.126 25 C -0.143 4.143 26 C -0.153 4.153 27 C -0.142 4.142 28 C -0.122 4.122 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.234 0.766 33 H 0.213 0.787 34 H 0.257 0.743 35 H 0.043 0.957 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.975 -1.836 9.025 17.581 hybrid contribution -0.656 1.085 -0.997 1.613 sum -15.632 -0.751 8.027 17.588 Atomic orbital electron populations 1.21940 0.75774 1.04602 1.03364 1.44887 1.07432 1.04569 1.60659 1.25216 0.84793 0.92693 1.03063 1.70178 1.18548 1.10295 1.17948 1.19667 0.93899 0.91896 1.18895 1.18695 0.88364 0.88292 0.98686 1.67232 1.37399 0.99436 1.26902 1.24365 0.81481 0.98972 0.87825 1.68099 1.22776 1.13311 1.27730 1.17954 0.84800 0.86927 0.84139 1.44961 1.00828 1.10564 1.71479 1.20422 0.88556 0.92212 0.90568 0.88723 1.19414 0.90002 0.96483 0.95578 1.21070 0.99027 1.41000 0.94692 0.92539 1.24958 0.95075 0.95551 0.98380 1.69941 1.03716 1.42963 1.36433 0.86666 0.77486 0.78704 0.85233 1.20277 1.21273 1.20235 1.20512 0.96884 0.93349 0.96324 1.20935 0.99790 0.99340 0.92521 1.21030 1.00869 0.95973 0.96468 1.20986 1.02040 0.93570 0.98688 1.21030 1.00999 0.99046 0.93105 1.20986 0.99317 0.95497 0.96437 0.90907 0.89518 0.89416 0.76624 0.78667 0.74267 0.95732 0.94455 0.92818 0.86720 0.86874 0.86936 0.86632 0.86024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 11.18 59.85 0.67 1.30 16 2 N -0.48 -5.99 3.19 -125.03 -0.40 -6.39 16 3 C 0.23 2.79 12.51 -89.50 -1.12 1.67 16 4 N -0.45 -7.54 11.28 -11.84 -0.13 -7.67 16 5 C -0.12 -2.10 7.17 -84.54 -0.61 -2.71 16 6 C 0.30 4.90 8.05 -155.80 -1.25 3.64 16 7 N -0.58 -9.31 10.47 -13.90 -0.15 -9.46 16 8 C 0.37 5.63 12.25 -92.07 -1.13 4.50 16 9 N -0.59 -10.54 9.35 -13.61 -0.13 -10.67 16 10 C 0.52 9.81 7.52 -154.66 -1.16 8.64 16 11 N -0.65 -12.77 4.17 -54.72 -0.23 -13.00 16 12 C 0.19 3.78 2.14 -69.08 -0.15 3.64 16 13 H 0.09 2.01 7.44 -51.93 -0.39 1.63 16 14 C 0.02 0.55 4.49 -27.88 -0.13 0.42 16 15 C -0.52 -14.03 8.84 -34.44 -0.30 -14.33 16 16 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -25.94 13.29 55.43 0.74 -25.21 16 19 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.07 -1.27 4.92 -104.62 -0.52 -1.79 16 24 C -0.11 -1.88 9.32 -39.58 -0.37 -2.25 16 25 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 26 C -0.13 -1.93 10.05 -39.58 -0.40 -2.32 16 27 C -0.12 -1.82 10.05 -39.59 -0.40 -2.21 16 28 C -0.10 -1.74 9.67 -39.58 -0.38 -2.12 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.22 1.49 8.06 -52.48 -0.42 1.07 16 33 H 0.20 2.21 8.06 -52.48 -0.42 1.78 16 34 H 0.42 8.36 8.63 -40.82 -0.35 8.01 16 35 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.11 1.99 7.73 -52.49 -0.41 1.59 16 39 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 42 H 0.12 1.91 8.04 -52.48 -0.42 1.48 16 LS Contribution 365.15 15.07 5.50 5.50 Total: -1.00 -33.51 365.15 -12.89 -46.39 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.34 Total: 8.51 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -7.74 Total: -4.60 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -0.30 Total: -72.39 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.51 -12.89 -46.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610969447.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.974 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds