Wall clock time and date at job start Tue Mar 31 2020 14:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99784 * 2 1 4 4 C 1.52997 * 109.47200 * 184.95737 * 3 2 1 5 5 N 1.46900 * 109.47039 * 67.78160 * 4 3 2 6 6 C 1.46906 * 111.00084 * 161.78088 * 5 4 3 7 7 C 1.50701 * 109.46789 * 294.88383 * 6 5 4 8 8 H 1.07996 * 120.00185 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99526 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99681 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00365 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47518 * 89.99640 * 11 9 7 13 13 H 1.48505 * 109.47090 * 210.00082 * 11 9 7 14 14 H 1.48499 * 109.47228 * 329.99642 * 11 9 7 15 15 C 1.46903 * 110.99696 * 285.72911 * 5 4 3 16 16 C 1.50705 * 109.46844 * 165.57195 * 15 5 4 17 17 C 1.38258 * 119.96352 * 265.65030 * 16 15 5 18 18 C 1.38481 * 120.10138 * 179.72662 * 17 16 15 19 19 C 1.39304 * 119.92037 * 0.54814 * 18 17 16 20 20 C 1.38494 * 119.87689 * 359.72466 * 19 18 17 21 21 C 1.38662 * 119.95524 * 85.92567 * 16 15 5 22 22 O 1.35983 * 119.98520 * 0.02562 * 21 16 15 23 23 C 1.42900 * 116.99811 * 179.97438 * 22 21 16 24 24 O 1.36495 * 108.64370 * 179.72615 * 19 18 17 25 25 C 1.43979 * 105.50425 * 17.29773 * 24 19 18 26 26 O 1.36599 * 131.47451 * 180.20509 * 18 17 16 27 27 H 1.08994 * 109.47373 * 64.98382 * 1 2 3 28 28 H 1.09002 * 109.46923 * 184.99128 * 1 2 3 29 29 H 1.09008 * 109.46832 * 304.98186 * 1 2 3 30 30 H 1.08999 * 109.47441 * 64.95652 * 3 2 1 31 31 H 1.08997 * 109.47278 * 304.95391 * 3 2 1 32 32 H 1.09000 * 109.47250 * 307.78372 * 4 3 2 33 33 H 1.08998 * 109.47577 * 187.78193 * 4 3 2 34 34 H 1.09001 * 109.46988 * 54.88367 * 6 5 4 35 35 H 1.08994 * 109.47277 * 174.87949 * 6 5 4 36 36 H 0.97004 * 119.99952 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.47474 * 285.57519 * 15 5 4 38 38 H 1.08999 * 109.46952 * 45.58045 * 15 5 4 39 39 H 1.08000 * 119.94502 * 359.97438 * 17 16 15 40 40 H 1.07999 * 120.00092 * 179.97438 * 20 19 18 41 41 H 1.08994 * 109.47009 * 180.02562 * 23 22 21 42 42 H 1.08996 * 109.47289 * 300.00369 * 23 22 21 43 43 H 1.09001 * 109.46894 * 60.00724 * 23 22 21 44 44 H 1.09006 * 110.57223 * 91.41293 * 25 24 19 45 45 H 1.08999 * 110.57850 * 214.28541 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5305 1.1869 -0.1246 5 7 3.8739 0.6722 -1.4570 6 6 5.2812 0.9433 -1.7794 7 6 5.4953 2.4315 -1.8822 8 1 4.6686 3.1081 -1.7243 9 6 6.7467 2.9290 -2.1779 10 7 6.9335 4.2277 -2.2681 11 14 8.1765 1.7586 -2.4519 12 1 8.2526 1.3981 -3.8904 13 1 9.4417 2.4175 -2.0390 14 1 7.9720 0.5296 -1.6438 15 6 3.5774 -0.7629 -1.5594 16 6 3.6004 -1.1785 -3.0078 17 6 2.4260 -1.2071 -3.7367 18 6 2.4446 -1.5831 -5.0694 19 6 3.6473 -1.9439 -5.6728 20 6 4.8217 -1.9199 -4.9391 21 6 4.7987 -1.5372 -3.6062 22 8 5.9518 -1.5143 -2.8858 23 6 7.1492 -1.8965 -3.5656 24 8 3.4006 -2.2751 -6.9738 25 6 2.1051 -1.7226 -7.2726 26 8 1.4444 -1.6886 -5.9937 27 1 -0.3634 0.4345 -0.9312 28 1 -0.3633 -1.0238 0.0894 29 1 -0.3633 0.5892 0.8421 30 1 1.7606 1.8143 0.9310 31 1 1.6201 1.8768 -0.8423 32 1 3.9052 0.5029 0.6368 33 1 3.9841 2.1683 0.0137 34 1 5.9186 0.5379 -0.9936 35 1 5.5332 0.4734 -2.7301 36 1 7.8138 4.5778 -2.4765 37 1 4.3272 -1.3292 -1.0069 38 1 2.5908 -0.9609 -1.1403 39 1 1.4931 -0.9320 -3.2671 40 1 5.7551 -2.1996 -5.4048 41 1 7.9928 -1.8346 -2.8782 42 1 7.0505 -2.9198 -3.9279 43 1 7.3176 -1.2270 -4.4091 44 1 2.2026 -0.7163 -7.6802 45 1 1.5644 -2.3669 -7.9659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612852075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:31 Heat of formation + Delta-G solvation = -93.883894 kcal Electronic energy + Delta-G solvation = -29055.040682 eV Core-core repulsion = 25040.449226 eV Total energy + Delta-G solvation = -4014.591456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.00226 -39.73011 -38.01158 -36.63880 -36.09665 -35.69484 -32.46478 -31.23886 -29.68278 -29.25639 -27.62786 -27.10160 -26.24357 -25.43943 -24.10694 -22.47181 -21.98556 -21.69858 -19.76881 -18.50782 -17.52867 -17.42242 -16.87389 -16.48579 -16.08943 -15.83800 -15.67635 -15.40548 -14.89719 -14.72918 -14.42333 -14.28154 -13.87265 -13.82462 -13.67444 -13.12231 -12.94007 -12.84127 -12.56355 -12.28259 -12.03166 -11.81177 -11.60198 -11.57825 -11.46610 -11.27177 -11.01041 -10.94864 -10.51837 -10.48053 -10.08677 -9.96947 -9.72222 -9.19612 -9.10975 -8.57314 -8.50049 -7.51010 -7.21085 -6.00466 -3.95527 1.35044 1.46726 2.82293 3.28011 3.35534 3.41315 3.47697 3.58643 3.78566 4.08775 4.46920 4.65611 4.71883 4.88069 4.95622 5.08680 5.16555 5.27045 5.32182 5.34579 5.36753 5.39214 5.49952 5.64215 5.68187 5.72566 5.76130 5.82239 5.85125 5.92151 6.04345 6.18998 6.27218 6.36507 6.43054 6.55538 6.66266 6.83766 7.12037 7.16108 7.18490 7.44630 7.57802 7.74348 8.03525 8.17538 8.74279 9.08162 9.63136 11.12781 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008657 B = 0.006222 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.445015 B = 4499.085235 C = 6575.764580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.388 6.388 3 C 0.065 3.935 4 C 0.062 3.938 5 N -0.520 5.520 6 C 0.159 3.841 7 C -0.506 4.506 8 H 0.079 0.921 9 C 0.067 3.933 10 N -0.904 5.904 11 Si 0.866 3.134 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.259 1.259 15 C 0.089 3.911 16 C -0.077 4.077 17 C -0.040 4.040 18 C -0.012 4.012 19 C 0.061 3.939 20 C -0.192 4.192 21 C 0.150 3.850 22 O -0.292 6.292 23 C 0.020 3.980 24 O -0.313 6.313 25 C 0.215 3.785 26 O -0.311 6.311 27 H 0.039 0.961 28 H 0.078 0.922 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.106 0.894 34 H -0.012 1.012 35 H 0.040 0.960 36 H 0.261 0.739 37 H 0.037 0.963 38 H 0.107 0.893 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.099 0.901 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.939 -13.414 -3.111 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.308 6.308 3 C -0.011 4.011 4 C -0.066 4.066 5 N -0.244 5.244 6 C 0.033 3.967 7 C -0.544 4.544 8 H 0.097 0.903 9 C -0.133 4.133 10 N -0.544 5.544 11 Si 0.694 3.306 12 H -0.204 1.204 13 H -0.216 1.216 14 H -0.183 1.183 15 C -0.038 4.038 16 C -0.079 4.079 17 C -0.060 4.060 18 C -0.056 4.056 19 C 0.017 3.983 20 C -0.211 4.211 21 C 0.103 3.897 22 O -0.205 6.205 23 C -0.075 4.075 24 O -0.230 6.230 25 C 0.103 3.897 26 O -0.228 6.228 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.124 0.876 34 H 0.006 0.994 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.125 0.875 39 H 0.158 0.842 40 H 0.154 0.846 41 H 0.117 0.883 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.038 -13.273 -3.418 16.417 hybrid contribution 1.317 -0.614 -0.332 1.490 sum -7.721 -13.887 -3.750 16.325 Atomic orbital electron populations 1.22676 0.82323 1.01919 0.99745 1.87846 1.18732 1.29119 1.95073 1.22769 0.94851 0.83894 0.99605 1.22108 0.92116 1.02187 0.90180 1.62003 1.24587 1.11638 1.26145 1.20338 0.83096 0.97269 0.96001 1.21144 0.96025 0.90229 1.47037 0.90309 1.24866 0.98443 0.94783 0.95242 1.69899 1.22959 1.11530 1.49977 0.86977 0.82409 0.82318 0.78937 1.20396 1.21607 1.18329 1.21227 1.02880 0.90081 0.89611 1.19008 0.88966 1.02077 0.97846 1.19655 0.98844 0.98276 0.89194 1.19562 0.85415 1.07578 0.93053 1.19285 0.94443 1.00387 0.84206 1.19902 0.96531 1.11181 0.93499 1.18362 0.86895 0.95643 0.88783 1.86341 1.13730 1.82436 1.37943 1.23122 0.85909 0.99440 0.99034 1.87296 1.36584 1.73577 1.25506 1.25531 0.77596 0.99839 0.86784 1.87324 1.29503 1.90884 1.15098 0.94224 0.90347 0.94612 0.93722 0.92303 0.95215 0.87623 0.99418 0.94191 0.92882 0.94477 0.87523 0.84178 0.84579 0.88296 0.92677 0.92462 0.90137 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.74 7.70 -35.23 -0.27 -6.02 16 3 C 0.07 1.02 6.23 37.16 0.23 1.25 16 4 C 0.06 1.18 5.36 -3.83 -0.02 1.16 16 5 N -0.52 -10.93 4.40 -237.51 -1.05 -11.97 16 6 C 0.16 3.87 2.87 -4.97 -0.01 3.86 16 7 C -0.51 -14.28 8.80 -34.44 -0.30 -14.58 16 8 H 0.08 2.40 7.47 -52.49 -0.39 2.00 16 9 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 10 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 11 Si 0.87 21.38 27.47 -169.99 -4.67 16.71 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 15 C 0.09 1.64 4.78 -4.97 -0.02 1.62 16 16 C -0.08 -1.39 5.14 -104.46 -0.54 -1.93 16 17 C -0.04 -0.67 9.69 -39.48 -0.38 -1.05 16 18 C -0.01 -0.20 7.15 -39.10 -0.28 -0.48 16 19 C 0.06 1.01 7.15 -39.09 -0.28 0.73 16 20 C -0.19 -3.14 9.05 -39.32 -0.36 -3.49 16 21 C 0.15 2.67 5.57 -39.26 -0.22 2.45 16 22 O -0.29 -5.30 7.21 -19.69 -0.14 -5.44 16 23 C 0.02 0.29 9.81 101.05 0.99 1.28 16 24 O -0.31 -4.61 11.40 -45.67 -0.52 -5.14 16 25 C 0.21 2.48 8.89 101.05 0.90 3.38 16 26 O -0.31 -4.59 11.41 -46.01 -0.52 -5.11 16 27 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.03 0.55 8.02 -51.93 -0.42 0.13 16 33 H 0.11 2.21 6.50 -51.93 -0.34 1.87 16 34 H -0.01 -0.30 7.19 -51.93 -0.37 -0.67 16 35 H 0.04 0.99 4.07 -51.93 -0.21 0.78 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.04 0.70 7.58 -51.93 -0.39 0.31 16 38 H 0.11 1.81 4.78 -51.93 -0.25 1.57 16 39 H 0.14 2.08 8.06 -52.49 -0.42 1.65 16 40 H 0.14 1.93 6.29 -52.49 -0.33 1.60 16 41 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 43 H 0.06 0.83 7.66 -51.93 -0.40 0.43 16 44 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.13 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 359.97 15.07 5.42 5.42 Total: -1.00 -33.12 359.97 -6.72 -39.84 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.47 Total: 1.14 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 0.72 Total: -2.50 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: -0.27 Total: -38.91 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -1.46 Total: -21.70 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.12 -6.72 -39.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612852075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.045 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds