Wall clock time and date at job start Tue Mar 31 2020 14:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99784 * 2 1 4 4 C 1.52997 * 109.47200 * 184.95737 * 3 2 1 5 5 N 1.46900 * 109.47039 * 67.78160 * 4 3 2 6 6 C 1.46906 * 111.00084 * 161.78088 * 5 4 3 7 7 C 1.50701 * 109.46789 * 294.88383 * 6 5 4 8 8 H 1.07996 * 120.00185 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99526 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99681 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00365 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47518 * 89.99640 * 11 9 7 13 13 H 1.48505 * 109.47090 * 210.00082 * 11 9 7 14 14 H 1.48499 * 109.47228 * 329.99642 * 11 9 7 15 15 C 1.46903 * 110.99696 * 285.72911 * 5 4 3 16 16 C 1.50705 * 109.46844 * 165.57195 * 15 5 4 17 17 C 1.38258 * 119.96352 * 265.65030 * 16 15 5 18 18 C 1.38481 * 120.10138 * 179.72662 * 17 16 15 19 19 C 1.39304 * 119.92037 * 0.54814 * 18 17 16 20 20 C 1.38494 * 119.87689 * 359.72466 * 19 18 17 21 21 C 1.38662 * 119.95524 * 85.92567 * 16 15 5 22 22 O 1.35983 * 119.98520 * 0.02562 * 21 16 15 23 23 C 1.42900 * 116.99811 * 179.97438 * 22 21 16 24 24 O 1.36495 * 108.64370 * 179.72615 * 19 18 17 25 25 C 1.43979 * 105.50425 * 17.29773 * 24 19 18 26 26 O 1.36599 * 131.47451 * 180.20509 * 18 17 16 27 27 H 1.08994 * 109.47373 * 64.98382 * 1 2 3 28 28 H 1.09002 * 109.46923 * 184.99128 * 1 2 3 29 29 H 1.09008 * 109.46832 * 304.98186 * 1 2 3 30 30 H 1.08999 * 109.47441 * 64.95652 * 3 2 1 31 31 H 1.08997 * 109.47278 * 304.95391 * 3 2 1 32 32 H 1.09000 * 109.47250 * 307.78372 * 4 3 2 33 33 H 1.08998 * 109.47577 * 187.78193 * 4 3 2 34 34 H 1.09001 * 109.46988 * 54.88367 * 6 5 4 35 35 H 1.08994 * 109.47277 * 174.87949 * 6 5 4 36 36 H 0.97004 * 119.99952 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.47474 * 285.57519 * 15 5 4 38 38 H 1.08999 * 109.46952 * 45.58045 * 15 5 4 39 39 H 1.08000 * 119.94502 * 359.97438 * 17 16 15 40 40 H 1.07999 * 120.00092 * 179.97438 * 20 19 18 41 41 H 1.08994 * 109.47009 * 180.02562 * 23 22 21 42 42 H 1.08996 * 109.47289 * 300.00369 * 23 22 21 43 43 H 1.09001 * 109.46894 * 60.00724 * 23 22 21 44 44 H 1.09006 * 110.57223 * 91.41293 * 25 24 19 45 45 H 1.08999 * 110.57850 * 214.28541 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5305 1.1869 -0.1246 5 7 3.8739 0.6722 -1.4570 6 6 5.2812 0.9433 -1.7794 7 6 5.4953 2.4315 -1.8822 8 1 4.6686 3.1081 -1.7243 9 6 6.7467 2.9290 -2.1779 10 7 6.9335 4.2277 -2.2681 11 14 8.1765 1.7586 -2.4519 12 1 8.2526 1.3981 -3.8904 13 1 9.4417 2.4175 -2.0390 14 1 7.9720 0.5296 -1.6438 15 6 3.5774 -0.7629 -1.5594 16 6 3.6004 -1.1785 -3.0078 17 6 2.4260 -1.2071 -3.7367 18 6 2.4446 -1.5831 -5.0694 19 6 3.6473 -1.9439 -5.6728 20 6 4.8217 -1.9199 -4.9391 21 6 4.7987 -1.5372 -3.6062 22 8 5.9518 -1.5143 -2.8858 23 6 7.1492 -1.8965 -3.5656 24 8 3.4006 -2.2751 -6.9738 25 6 2.1051 -1.7226 -7.2726 26 8 1.4444 -1.6886 -5.9937 27 1 -0.3634 0.4345 -0.9312 28 1 -0.3633 -1.0238 0.0894 29 1 -0.3633 0.5892 0.8421 30 1 1.7606 1.8143 0.9310 31 1 1.6201 1.8768 -0.8423 32 1 3.9052 0.5029 0.6368 33 1 3.9841 2.1683 0.0137 34 1 5.9186 0.5379 -0.9936 35 1 5.5332 0.4734 -2.7301 36 1 7.8138 4.5778 -2.4765 37 1 4.3272 -1.3292 -1.0069 38 1 2.5908 -0.9609 -1.1403 39 1 1.4931 -0.9320 -3.2671 40 1 5.7551 -2.1996 -5.4048 41 1 7.9928 -1.8346 -2.8782 42 1 7.0505 -2.9198 -3.9279 43 1 7.3176 -1.2270 -4.4091 44 1 2.2026 -0.7163 -7.6802 45 1 1.5644 -2.3669 -7.9659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612852075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:30 Heat of formation + Delta-G solvation = -117.673495 kcal Electronic energy + Delta-G solvation = -29056.072277 eV Core-core repulsion = 25040.449226 eV Total energy + Delta-G solvation = -4015.623050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.13270 -40.99650 -39.30413 -37.89758 -37.23365 -37.11204 -34.60274 -32.55742 -31.09287 -30.68485 -29.18374 -28.25566 -27.29966 -26.55702 -25.52099 -23.97467 -23.44079 -22.99901 -21.41637 -19.70189 -19.11652 -18.55540 -18.46401 -17.77164 -17.26281 -17.11235 -17.03364 -16.48489 -16.26433 -16.05819 -15.95625 -15.56971 -15.40130 -15.13517 -14.98419 -14.58577 -14.26990 -14.09785 -13.95663 -13.74989 -13.52115 -13.15578 -13.01864 -12.82136 -12.74696 -12.59107 -12.53583 -12.29605 -12.17220 -11.94526 -11.80567 -11.46375 -11.38862 -10.98271 -10.70817 -10.36085 -9.81926 -8.96370 -8.67382 -8.23963 -6.24302 0.08368 0.21649 1.31096 1.34994 1.48462 1.70403 2.32503 2.38234 2.49255 2.55655 2.95689 3.10944 3.44485 3.46661 3.78402 3.88393 4.00756 4.04507 4.17617 4.25207 4.29251 4.31020 4.39387 4.48428 4.53384 4.54847 4.63620 4.65992 4.70414 4.77352 4.89887 4.94512 4.95145 4.97517 5.04606 5.13152 5.17874 5.26075 5.31252 5.54379 5.66694 6.00859 6.06535 6.33163 6.36140 6.49378 6.74499 6.81718 7.38830 8.92144 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008657 B = 0.006222 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.445015 B = 4499.085235 C = 6575.764580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.078 3.922 4 C 0.061 3.939 5 N -0.531 5.531 6 C 0.176 3.824 7 C -0.509 4.509 8 H 0.041 0.959 9 C 0.008 3.992 10 N -0.950 5.950 11 Si 0.929 3.071 12 H -0.264 1.264 13 H -0.287 1.287 14 H -0.241 1.241 15 C 0.099 3.901 16 C -0.100 4.100 17 C -0.042 4.042 18 C -0.019 4.019 19 C 0.057 3.943 20 C -0.195 4.195 21 C 0.137 3.863 22 O -0.316 6.316 23 C 0.009 3.991 24 O -0.320 6.320 25 C 0.205 3.795 26 O -0.320 6.320 27 H 0.042 0.958 28 H 0.098 0.902 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.034 0.966 33 H 0.076 0.924 34 H -0.022 1.022 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.029 0.971 38 H 0.121 0.879 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.109 0.891 42 H 0.085 0.915 43 H 0.054 0.946 44 H 0.096 0.904 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.522 -15.648 -4.033 18.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C 0.002 3.998 4 C -0.067 4.067 5 N -0.255 5.255 6 C 0.049 3.951 7 C -0.547 4.547 8 H 0.059 0.941 9 C -0.189 4.189 10 N -0.591 5.591 11 Si 0.753 3.247 12 H -0.189 1.189 13 H -0.213 1.213 14 H -0.164 1.164 15 C -0.027 4.027 16 C -0.101 4.101 17 C -0.061 4.061 18 C -0.063 4.063 19 C 0.012 3.988 20 C -0.214 4.214 21 C 0.091 3.909 22 O -0.229 6.229 23 C -0.086 4.086 24 O -0.236 6.236 25 C 0.094 3.906 26 O -0.237 6.237 27 H 0.061 0.939 28 H 0.116 0.884 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.094 0.906 34 H -0.004 1.004 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.139 0.861 39 H 0.170 0.830 40 H 0.173 0.827 41 H 0.127 0.873 42 H 0.103 0.897 43 H 0.072 0.928 44 H 0.113 0.887 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.652 -15.527 -4.346 18.792 hybrid contribution 1.352 0.094 -0.100 1.359 sum -8.300 -15.433 -4.446 18.079 Atomic orbital electron populations 1.22899 0.80053 1.03604 1.00558 1.87774 1.21057 1.28230 1.95212 1.22497 0.92367 0.84585 1.00383 1.22062 0.94693 1.00491 0.89420 1.61959 1.22294 1.13842 1.27395 1.20016 0.85149 0.94226 0.95668 1.21380 0.95077 0.92001 1.46276 0.94093 1.25751 1.01575 0.96466 0.95058 1.70053 1.23822 1.13693 1.51541 0.85972 0.78372 0.80538 0.79802 1.18906 1.21334 1.16428 1.21168 1.03228 0.87922 0.90405 1.19072 0.89840 1.03487 0.97747 1.19749 0.98914 0.97984 0.89484 1.19671 0.85996 1.07323 0.93274 1.19465 0.94489 0.99885 0.84962 1.20073 0.97489 1.10832 0.93052 1.18515 0.86894 0.96074 0.89421 1.86280 1.14659 1.82857 1.39137 1.23401 0.84876 1.01134 0.99150 1.87283 1.38075 1.73715 1.24563 1.26112 0.76623 1.01838 0.86015 1.87307 1.29613 1.90811 1.15935 0.93936 0.88372 0.93160 0.91449 0.93197 0.94825 0.90554 1.00430 0.94045 0.92767 0.95277 0.86097 0.83004 0.82670 0.87276 0.89683 0.92783 0.88687 0.81415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 11.01 113.37 1.25 1.74 16 2 O -0.40 -11.30 7.70 -148.98 -1.15 -12.45 16 3 C 0.08 2.41 6.23 71.98 0.45 2.86 16 4 C 0.06 2.37 5.36 86.30 0.46 2.83 16 5 N -0.53 -22.62 4.40 -905.35 -3.98 -26.60 16 6 C 0.18 8.69 2.87 85.56 0.25 8.94 16 7 C -0.51 -29.69 8.80 25.60 0.23 -29.47 16 8 H 0.04 2.63 7.47 -2.91 -0.02 2.61 16 9 C 0.01 0.48 5.47 84.65 0.46 0.94 16 10 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 11 Si 0.93 44.24 27.47 68.60 1.88 46.13 16 12 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 13 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 14 H -0.24 -10.68 6.54 99.48 0.65 -10.03 16 15 C 0.10 3.62 4.78 85.56 0.41 4.03 16 16 C -0.10 -3.52 5.14 -19.76 -0.10 -3.62 16 17 C -0.04 -1.35 9.69 22.33 0.22 -1.14 16 18 C -0.02 -0.58 7.15 22.58 0.16 -0.42 16 19 C 0.06 1.77 7.15 22.59 0.16 1.93 16 20 C -0.20 -6.08 9.05 22.44 0.20 -5.87 16 21 C 0.14 4.77 5.57 22.48 0.13 4.90 16 22 O -0.32 -11.08 7.21 -93.36 -0.67 -11.76 16 23 C 0.01 0.23 9.81 113.37 1.11 1.34 16 24 O -0.32 -8.65 11.40 -75.99 -0.87 -9.52 16 25 C 0.20 4.15 8.89 113.37 1.01 5.15 16 26 O -0.32 -8.74 11.41 -77.22 -0.88 -9.62 16 27 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 32 H 0.03 1.25 8.02 -2.39 -0.02 1.23 16 33 H 0.08 3.36 6.50 -2.39 -0.02 3.35 16 34 H -0.02 -1.12 7.19 -2.39 -0.02 -1.13 16 35 H 0.04 2.06 4.07 -2.39 -0.01 2.05 16 36 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.03 1.10 7.58 -2.39 -0.02 1.08 16 38 H 0.12 4.01 4.78 -2.39 -0.01 3.99 16 39 H 0.15 4.32 8.06 -2.91 -0.02 4.30 16 40 H 0.16 4.06 6.29 -2.91 -0.02 4.04 16 41 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.08 1.68 7.66 -2.39 -0.02 1.66 16 43 H 0.05 1.44 7.66 -2.39 -0.02 1.42 16 44 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 45 H 0.17 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -73.19 359.97 1.97 -71.22 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.95 Total: 18.07 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 6.39 Total: -5.86 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -3.69 Total: -86.22 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -3.57 Total: -43.34 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.13 kcal Total: -73.19 1.97 -71.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612852075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.456 kcal (2) G-P(sol) polarization free energy of solvation -73.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds