Wall clock time and date at job start Tue Mar 31 2020 13:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00268 * 2 1 4 4 C 1.52998 * 109.47035 * 210.00015 * 3 2 1 5 5 C 1.53002 * 109.46942 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47398 * 59.99938 * 5 4 3 7 7 C 1.50696 * 109.47389 * 60.00007 * 6 5 4 8 8 O 1.21284 * 120.00022 * 342.58438 * 7 6 5 9 9 N 1.34771 * 120.00184 * 162.58538 * 7 6 5 10 10 C 1.46504 * 119.99964 * 4.20158 * 9 7 6 11 11 C 1.50699 * 109.46990 * 264.30771 * 10 9 7 12 12 H 1.08000 * 120.00287 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99952 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99919 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 119.99850 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47548 * 89.99721 * 15 13 11 17 17 H 1.48503 * 109.47282 * 210.00035 * 15 13 11 18 18 H 1.48501 * 109.47348 * 329.99420 * 15 13 11 19 19 C 1.46497 * 120.00172 * 184.48147 * 9 7 6 20 20 C 1.53009 * 109.47018 * 265.86580 * 19 9 7 21 21 F 1.39900 * 109.46564 * 60.00048 * 20 19 9 22 22 F 1.39898 * 109.47084 * 179.97438 * 20 19 9 23 23 F 1.39893 * 109.47089 * 299.99737 * 20 19 9 24 24 C 1.53006 * 109.46983 * 300.00133 * 6 5 4 25 25 C 1.52995 * 109.46842 * 89.99832 * 3 2 1 26 26 H 1.08997 * 109.47547 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46934 * 300.00386 * 1 2 3 28 28 H 1.09007 * 109.46976 * 59.99656 * 1 2 3 29 29 H 1.08994 * 109.46851 * 329.99943 * 3 2 1 30 30 H 1.08994 * 109.47207 * 59.99714 * 4 3 2 31 31 H 1.09003 * 109.47049 * 299.99441 * 4 3 2 32 32 H 1.09003 * 109.46597 * 299.99478 * 5 4 3 33 33 H 1.08997 * 109.47078 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47367 * 180.02562 * 6 5 4 35 35 H 1.09003 * 109.47073 * 24.31021 * 10 9 7 36 36 H 1.08996 * 109.46974 * 144.31188 * 10 9 7 37 37 H 0.97006 * 119.99521 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.47088 * 25.86381 * 19 9 7 39 39 H 1.09000 * 109.47792 * 145.87129 * 19 9 7 40 40 H 1.08994 * 109.47065 * 180.02562 * 24 6 5 41 41 H 1.09008 * 109.46758 * 299.99732 * 24 6 5 42 42 H 1.09003 * 109.47792 * 299.99778 * 25 3 2 43 43 H 1.09003 * 109.47605 * 60.00336 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2632 -0.7212 5 6 3.9816 2.6607 -0.7207 6 6 4.1891 3.1261 0.7220 7 6 5.1086 2.1663 1.4321 8 8 5.3026 1.0605 0.9732 9 7 5.7154 2.5366 2.5771 10 6 5.4106 3.8364 3.1804 11 6 6.4420 4.8458 2.7466 12 1 7.2441 4.5490 2.0871 13 6 6.3611 6.1486 3.1908 14 7 7.2615 7.0294 2.8126 15 14 4.9734 6.6622 4.3308 16 1 5.3946 6.4692 5.7417 17 1 4.6490 8.0932 4.1024 18 1 3.7731 5.8325 4.0547 19 6 6.6843 1.6421 3.2152 20 6 5.9752 0.7926 4.2719 21 9 4.9705 0.0334 3.6624 22 9 6.9003 -0.0621 4.8808 23 9 5.4064 1.6293 5.2380 24 6 2.8404 3.1683 1.4432 25 6 2.2177 1.7713 1.4425 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.3451 1.9993 -0.5138 30 1 3.2112 0.9312 -1.7488 31 1 4.0242 0.5693 -0.2073 32 1 3.3165 3.3550 -1.2343 33 1 4.9422 2.6307 -1.2349 34 1 4.6323 4.1219 0.7224 35 1 4.4226 4.1644 2.8569 36 1 5.4257 3.7453 4.2664 37 1 7.2044 7.9460 3.1249 38 1 7.1275 0.9902 2.4624 39 1 7.4671 2.2335 3.6900 40 1 2.9882 3.5003 2.4708 41 1 2.1753 3.8627 0.9296 42 1 1.2569 1.8015 1.9564 43 1 2.8829 1.0774 1.9564 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614843307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:37 Heat of formation + Delta-G solvation = -241.698120 kcal Electronic energy + Delta-G solvation = -30372.902073 eV Core-core repulsion = 25810.044171 eV Total energy + Delta-G solvation = -4562.857902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.72033 -47.27614 -47.16791 -40.40956 -38.26085 -36.00349 -35.35227 -32.71822 -30.90683 -30.40129 -29.23026 -27.56386 -26.42336 -23.70052 -23.05389 -22.34420 -21.90591 -20.50691 -18.66779 -18.17682 -18.00653 -17.31822 -16.76680 -16.66280 -16.13624 -15.90000 -15.04362 -14.94495 -14.73831 -14.38037 -14.10214 -14.07962 -13.79664 -13.66053 -13.46895 -13.37835 -13.36130 -13.15093 -12.94307 -12.61337 -12.28307 -12.12296 -12.03623 -11.91020 -11.73225 -11.62923 -11.46133 -11.15395 -10.88636 -10.79693 -10.54845 -10.30559 -10.28374 -10.17198 -9.75159 -9.29588 -8.88856 -8.76707 -8.13783 -6.31752 -4.34761 2.86920 3.11717 3.17676 3.20064 3.24527 3.44683 3.84819 4.18073 4.22470 4.41164 4.63532 4.82528 4.89314 4.99027 5.05681 5.17573 5.24121 5.32280 5.40105 5.43386 5.52873 5.60735 5.65860 5.68846 5.70245 5.73374 5.90098 6.03701 6.13122 6.21916 6.29950 6.40332 6.42678 6.46537 6.62360 6.83407 7.01788 7.31119 7.36318 7.83746 8.24604 8.64280 8.73898 9.26625 10.80375 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.010793 B = 0.005951 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.552532 B = 4703.809958 C = 6091.435104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.096 3.904 4 C -0.140 4.140 5 C -0.091 4.091 6 C -0.109 4.109 7 C 0.532 3.468 8 O -0.542 6.542 9 N -0.589 5.589 10 C 0.195 3.805 11 C -0.547 4.547 12 H 0.081 0.919 13 C 0.080 3.920 14 N -0.887 5.887 15 Si 0.867 3.133 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.263 1.263 19 C 0.080 3.920 20 C 0.431 3.569 21 F -0.179 7.179 22 F -0.189 7.189 23 F -0.183 7.183 24 C -0.111 4.111 25 C -0.143 4.143 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.119 0.881 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.050 0.950 36 H 0.036 0.964 37 H 0.268 0.732 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.258 -8.696 -2.258 12.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.038 3.962 4 C -0.177 4.177 5 C -0.129 4.129 6 C -0.130 4.130 7 C 0.322 3.678 8 O -0.421 6.421 9 N -0.320 5.320 10 C 0.075 3.925 11 C -0.585 4.585 12 H 0.099 0.901 13 C -0.124 4.124 14 N -0.524 5.524 15 Si 0.694 3.306 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.187 1.187 19 C -0.047 4.047 20 C 0.375 3.625 21 F -0.160 7.160 22 F -0.171 7.171 23 F -0.165 7.165 24 C -0.149 4.149 25 C -0.181 4.181 26 H 0.099 0.901 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.137 0.863 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.134 0.866 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.013 -9.227 -2.462 13.132 hybrid contribution -0.960 0.734 1.037 1.593 sum -9.973 -8.493 -1.424 13.177 Atomic orbital electron populations 1.22730 0.82011 1.02221 0.99580 1.87944 1.18808 1.28511 1.95028 1.22151 0.95145 0.83538 0.95330 1.22080 0.95895 0.99385 1.00369 1.21283 1.01212 0.96095 0.94342 1.21349 0.95321 1.00922 0.95441 1.20609 0.79968 0.87449 0.79785 1.90483 1.63588 1.22158 1.65867 1.47865 1.41138 1.18850 1.24097 1.20213 0.98267 0.79550 0.94450 1.21309 1.12185 0.93241 1.31737 0.90142 1.24836 0.95694 0.96292 0.95593 1.69879 1.34411 1.03934 1.44133 0.86983 0.83095 0.78611 0.81950 1.19724 1.20742 1.18738 1.22432 0.92658 0.94451 0.95123 1.21591 0.78229 0.79579 0.83128 1.93202 1.62642 1.77408 1.82757 1.93145 1.66255 1.72666 1.85008 1.93165 1.85971 1.71202 1.66130 1.21590 0.94889 0.96809 1.01622 1.22065 1.01153 0.97345 0.97553 0.90078 0.94364 0.94424 0.92978 0.92491 0.86281 0.91718 0.91032 0.86601 0.93216 0.94630 0.92208 0.86234 0.85669 0.90335 0.90857 0.92229 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.82 101.05 1.09 1.43 16 2 O -0.38 -5.67 10.35 -35.23 -0.36 -6.03 16 3 C 0.10 1.35 2.61 -26.73 -0.07 1.28 16 4 C -0.14 -2.10 5.28 -26.73 -0.14 -2.24 16 5 C -0.09 -1.32 5.25 -26.73 -0.14 -1.46 16 6 C -0.11 -1.78 2.17 -91.77 -0.20 -1.98 16 7 C 0.53 9.82 5.33 -10.99 -0.06 9.76 16 8 O -0.54 -10.60 12.20 5.55 0.07 -10.53 16 9 N -0.59 -11.12 2.37 -175.06 -0.42 -11.53 16 10 C 0.20 4.03 3.63 -5.19 -0.02 4.02 16 11 C -0.55 -13.39 9.68 -34.44 -0.33 -13.73 16 12 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 13 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 14 N -0.89 -24.59 13.96 55.43 0.77 -23.82 16 15 Si 0.87 18.99 27.47 -169.99 -4.67 14.32 16 16 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.26 -5.36 6.54 56.52 0.37 -4.99 16 19 C 0.08 1.35 5.47 -4.04 -0.02 1.32 16 20 C 0.43 7.17 3.29 37.16 0.12 7.29 16 21 F -0.18 -3.21 16.56 2.25 0.04 -3.18 16 22 F -0.19 -2.94 17.32 2.25 0.04 -2.91 16 23 F -0.18 -3.21 15.79 2.25 0.04 -3.17 16 24 C -0.11 -1.64 5.13 -26.75 -0.14 -1.78 16 25 C -0.14 -2.11 5.32 -26.76 -0.14 -2.26 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.38 7.87 -51.93 -0.41 -0.03 16 28 H 0.04 0.35 8.09 -51.92 -0.42 -0.07 16 29 H 0.05 0.65 7.79 -51.93 -0.40 0.24 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.12 2.14 4.97 -51.94 -0.26 1.88 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.12 2.04 7.24 -51.93 -0.38 1.67 16 35 H 0.05 1.00 3.34 -51.93 -0.17 0.82 16 36 H 0.04 0.74 6.24 -51.93 -0.32 0.42 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.12 1.90 7.36 -51.93 -0.38 1.52 16 39 H 0.13 2.00 8.10 -51.93 -0.42 1.58 16 40 H 0.08 1.24 5.86 -51.93 -0.30 0.93 16 41 H 0.07 0.93 8.14 -51.92 -0.42 0.50 16 42 H 0.06 0.79 7.87 -51.93 -0.41 0.38 16 43 H 0.07 1.32 7.09 -51.93 -0.37 0.95 16 LS Contribution 345.10 15.07 5.20 5.20 Total: -1.00 -28.11 345.10 -5.39 -33.50 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.95 Total: 4.54 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -0.14 Total: 3.60 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.36 Total: -35.35 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.30 Total: -16.56 kcal Atomic # 9 Polarization: -9.36 SS G_CDS: 0.11 Total: -9.25 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.67 Total: 14.32 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.11 -5.39 -33.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614843307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.194 kcal (2) G-P(sol) polarization free energy of solvation -28.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds