Wall clock time and date at job start Tue Mar 31 2020 13:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00268 * 2 1 4 4 C 1.52998 * 109.47035 * 210.00015 * 3 2 1 5 5 C 1.53002 * 109.46942 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47398 * 59.99938 * 5 4 3 7 7 C 1.50696 * 109.47389 * 60.00007 * 6 5 4 8 8 O 1.21284 * 120.00022 * 342.58438 * 7 6 5 9 9 N 1.34771 * 120.00184 * 162.58538 * 7 6 5 10 10 C 1.46504 * 119.99964 * 4.20158 * 9 7 6 11 11 C 1.50699 * 109.46990 * 264.30771 * 10 9 7 12 12 H 1.08000 * 120.00287 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99952 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99919 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 119.99850 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47548 * 89.99721 * 15 13 11 17 17 H 1.48503 * 109.47282 * 210.00035 * 15 13 11 18 18 H 1.48501 * 109.47348 * 329.99420 * 15 13 11 19 19 C 1.46497 * 120.00172 * 184.48147 * 9 7 6 20 20 C 1.53009 * 109.47018 * 265.86580 * 19 9 7 21 21 F 1.39900 * 109.46564 * 60.00048 * 20 19 9 22 22 F 1.39898 * 109.47084 * 179.97438 * 20 19 9 23 23 F 1.39893 * 109.47089 * 299.99737 * 20 19 9 24 24 C 1.53006 * 109.46983 * 300.00133 * 6 5 4 25 25 C 1.52995 * 109.46842 * 89.99832 * 3 2 1 26 26 H 1.08997 * 109.47547 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46934 * 300.00386 * 1 2 3 28 28 H 1.09007 * 109.46976 * 59.99656 * 1 2 3 29 29 H 1.08994 * 109.46851 * 329.99943 * 3 2 1 30 30 H 1.08994 * 109.47207 * 59.99714 * 4 3 2 31 31 H 1.09003 * 109.47049 * 299.99441 * 4 3 2 32 32 H 1.09003 * 109.46597 * 299.99478 * 5 4 3 33 33 H 1.08997 * 109.47078 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47367 * 180.02562 * 6 5 4 35 35 H 1.09003 * 109.47073 * 24.31021 * 10 9 7 36 36 H 1.08996 * 109.46974 * 144.31188 * 10 9 7 37 37 H 0.97006 * 119.99521 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.47088 * 25.86381 * 19 9 7 39 39 H 1.09000 * 109.47792 * 145.87129 * 19 9 7 40 40 H 1.08994 * 109.47065 * 180.02562 * 24 6 5 41 41 H 1.09008 * 109.46758 * 299.99732 * 24 6 5 42 42 H 1.09003 * 109.47792 * 299.99778 * 25 3 2 43 43 H 1.09003 * 109.47605 * 60.00336 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2632 -0.7212 5 6 3.9816 2.6607 -0.7207 6 6 4.1891 3.1261 0.7220 7 6 5.1086 2.1663 1.4321 8 8 5.3026 1.0605 0.9732 9 7 5.7154 2.5366 2.5771 10 6 5.4106 3.8364 3.1804 11 6 6.4420 4.8458 2.7466 12 1 7.2441 4.5490 2.0871 13 6 6.3611 6.1486 3.1908 14 7 7.2615 7.0294 2.8126 15 14 4.9734 6.6622 4.3308 16 1 5.3946 6.4692 5.7417 17 1 4.6490 8.0932 4.1024 18 1 3.7731 5.8325 4.0547 19 6 6.6843 1.6421 3.2152 20 6 5.9752 0.7926 4.2719 21 9 4.9705 0.0334 3.6624 22 9 6.9003 -0.0621 4.8808 23 9 5.4064 1.6293 5.2380 24 6 2.8404 3.1683 1.4432 25 6 2.2177 1.7713 1.4425 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.3451 1.9993 -0.5138 30 1 3.2112 0.9312 -1.7488 31 1 4.0242 0.5693 -0.2073 32 1 3.3165 3.3550 -1.2343 33 1 4.9422 2.6307 -1.2349 34 1 4.6323 4.1219 0.7224 35 1 4.4226 4.1644 2.8569 36 1 5.4257 3.7453 4.2664 37 1 7.2044 7.9460 3.1249 38 1 7.1275 0.9902 2.4624 39 1 7.4671 2.2335 3.6900 40 1 2.9882 3.5003 2.4708 41 1 2.1753 3.8627 0.9296 42 1 1.2569 1.8015 1.9564 43 1 2.8829 1.0774 1.9564 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614843307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:37 Heat of formation + Delta-G solvation = -257.679992 kcal Electronic energy + Delta-G solvation = -30373.595099 eV Core-core repulsion = 25810.044171 eV Total energy + Delta-G solvation = -4563.550928 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.09487 -48.62377 -48.57339 -41.75709 -39.42668 -37.29314 -36.78411 -34.61419 -32.18213 -31.60626 -30.65814 -29.16872 -27.33334 -25.04047 -24.70089 -23.55870 -23.21190 -21.73609 -20.07222 -19.58368 -19.41842 -19.04505 -18.32231 -17.87771 -17.42559 -17.15279 -16.39637 -16.07172 -15.99836 -15.93769 -15.49568 -15.42381 -15.13043 -15.02969 -14.77679 -14.74217 -14.69078 -14.52054 -14.43160 -14.04598 -13.67251 -13.46136 -13.27433 -13.21769 -13.05593 -12.89974 -12.83232 -12.51988 -12.47704 -12.06269 -11.86429 -11.74302 -11.66423 -11.39784 -11.34329 -10.78165 -10.35930 -10.20426 -9.71444 -8.28752 -6.35882 1.40716 1.43532 1.46509 1.50932 1.78954 2.03214 2.35162 2.84317 2.88009 3.03697 3.06102 3.28235 3.56392 3.74110 3.82072 4.10199 4.11388 4.20343 4.29704 4.34377 4.45505 4.51867 4.54108 4.55188 4.58056 4.61918 4.75905 4.81854 4.85742 4.96572 5.08275 5.08930 5.23905 5.25717 5.30072 5.45103 5.46113 5.64801 6.14438 6.39086 6.47157 6.69806 7.18629 7.31124 8.86743 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.010793 B = 0.005951 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.552532 B = 4703.809958 C = 6091.435104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.098 3.902 4 C -0.138 4.138 5 C -0.087 4.087 6 C -0.110 4.110 7 C 0.526 3.474 8 O -0.555 6.555 9 N -0.597 5.597 10 C 0.206 3.794 11 C -0.539 4.539 12 H 0.040 0.960 13 C 0.027 3.973 14 N -0.937 5.937 15 Si 0.926 3.074 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.233 1.233 19 C 0.076 3.924 20 C 0.438 3.562 21 F -0.186 7.186 22 F -0.181 7.181 23 F -0.186 7.186 24 C -0.108 4.108 25 C -0.138 4.138 26 H 0.092 0.908 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.268 0.732 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.923 -8.713 -2.137 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.331 6.331 3 C 0.041 3.959 4 C -0.175 4.175 5 C -0.125 4.125 6 C -0.132 4.132 7 C 0.317 3.683 8 O -0.435 6.435 9 N -0.327 5.327 10 C 0.085 3.915 11 C -0.577 4.577 12 H 0.059 0.941 13 C -0.172 4.172 14 N -0.577 5.577 15 Si 0.749 3.251 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.156 1.156 19 C -0.050 4.050 20 C 0.383 3.617 21 F -0.168 7.168 22 F -0.162 7.162 23 F -0.168 7.168 24 C -0.146 4.146 25 C -0.176 4.176 26 H 0.111 0.889 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.143 0.857 39 H 0.148 0.852 40 H 0.087 0.913 41 H 0.122 0.878 42 H 0.095 0.905 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.690 -9.282 -2.343 15.110 hybrid contribution -0.056 0.635 0.944 1.139 sum -11.746 -8.647 -1.400 14.652 Atomic orbital electron populations 1.22955 0.79973 1.03515 1.00750 1.87912 1.21146 1.28938 1.95154 1.22126 0.94977 0.84029 0.94805 1.21972 0.96088 0.98745 1.00672 1.21284 1.01456 0.96536 0.93210 1.21417 0.95736 0.99350 0.96648 1.21119 0.79986 0.87709 0.79520 1.90500 1.64030 1.22900 1.66043 1.47899 1.41707 1.18524 1.24593 1.20013 0.97578 0.79366 0.94571 1.21433 1.11778 0.94188 1.30320 0.94142 1.25635 0.98119 0.96278 0.97202 1.70026 1.36903 1.04439 1.46282 0.86031 0.81037 0.78453 0.79572 1.19567 1.20900 1.15600 1.22535 0.92533 0.94496 0.95435 1.21415 0.77994 0.79447 0.82888 1.93191 1.63034 1.77593 1.82940 1.93161 1.65887 1.72381 1.84820 1.93155 1.86058 1.71339 1.66217 1.21605 0.94277 0.97535 1.01155 1.22001 1.01116 0.96421 0.98031 0.88916 0.93576 0.92754 0.90380 0.91503 0.89569 0.88757 0.92047 0.88037 0.91683 0.94155 0.92251 0.85652 0.85154 0.91257 0.87828 0.90517 0.93948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.82 113.37 1.23 1.67 16 2 O -0.41 -11.35 10.35 -148.98 -1.54 -12.89 16 3 C 0.10 2.52 2.61 30.59 0.08 2.60 16 4 C -0.14 -3.94 5.28 30.59 0.16 -3.77 16 5 C -0.09 -2.37 5.25 30.59 0.16 -2.21 16 6 C -0.11 -3.47 2.17 -11.54 -0.02 -3.50 16 7 C 0.53 19.35 5.33 87.66 0.47 19.81 16 8 O -0.56 -21.95 12.20 -3.04 -0.04 -21.99 16 9 N -0.60 -22.42 2.37 -826.15 -1.96 -24.38 16 10 C 0.21 8.30 3.63 85.63 0.31 8.61 16 11 C -0.54 -26.66 9.68 25.60 0.25 -26.41 16 12 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 13 C 0.03 1.40 5.47 84.66 0.46 1.87 16 14 N -0.94 -53.04 13.96 21.45 0.30 -52.74 16 15 Si 0.93 38.00 27.47 68.60 1.88 39.89 16 16 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 17 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.23 -8.38 6.54 99.48 0.65 -7.73 16 19 C 0.08 2.56 5.47 86.38 0.47 3.03 16 20 C 0.44 14.30 3.29 71.99 0.24 14.54 16 21 F -0.19 -6.62 16.56 44.97 0.74 -5.88 16 22 F -0.18 -5.47 17.32 44.97 0.78 -4.69 16 23 F -0.19 -6.29 15.79 44.97 0.71 -5.58 16 24 C -0.11 -2.90 5.13 30.58 0.16 -2.74 16 25 C -0.14 -3.76 5.32 30.58 0.16 -3.60 16 26 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.05 0.77 7.87 -2.39 -0.02 0.75 16 28 H 0.05 0.82 8.09 -2.38 -0.02 0.80 16 29 H 0.08 1.61 7.79 -2.39 -0.02 1.59 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.09 3.10 4.97 -2.57 -0.01 3.08 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 34 H 0.10 3.49 7.24 -2.39 -0.02 3.48 16 35 H 0.07 2.46 3.34 -2.39 -0.01 2.46 16 36 H 0.04 1.61 6.24 -2.39 -0.01 1.60 16 37 H 0.27 14.28 8.31 -92.70 -0.77 13.51 16 38 H 0.13 4.03 7.36 -2.39 -0.02 4.01 16 39 H 0.13 4.19 8.10 -2.39 -0.02 4.17 16 40 H 0.07 1.99 5.86 -2.39 -0.01 1.97 16 41 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 42 H 0.08 1.81 7.87 -2.39 -0.02 1.79 16 43 H 0.04 1.44 7.09 -2.39 -0.02 1.42 16 Total: -1.00 -61.38 345.10 5.98 -55.40 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.98 Total: 22.97 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 4.12 Total: 9.89 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -1.66 Total: -77.12 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -1.58 Total: -34.88 kcal Atomic # 9 Polarization: -18.39 SS G_CDS: 2.23 Total: -16.15 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 1.88 Total: 39.89 kcal Total: -61.38 5.98 -55.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614843307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.280 kcal (2) G-P(sol) polarization free energy of solvation -61.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -263.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -257.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds