Wall clock time and date at job start Tue Mar 31 2020 13:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00174 * 2 1 4 4 C 1.46905 * 111.00107 * 123.95181 * 2 1 3 5 5 C 1.52994 * 109.46664 * 66.04904 * 4 2 1 6 6 N 1.46507 * 109.47038 * 179.97438 * 5 4 2 7 7 C 1.34780 * 120.00323 * 179.97438 * 6 5 4 8 8 S 1.71206 * 119.99603 * 0.02562 * 7 6 5 9 9 N 1.34769 * 119.99947 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99695 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.46837 * 180.02562 * 10 9 7 12 12 C 1.38305 * 119.93408 * 89.99748 * 11 10 9 13 13 C 1.38101 * 120.07071 * 179.97438 * 12 11 10 14 14 C 1.38876 * 119.92956 * 0.02562 * 13 12 11 15 15 O 1.35750 * 120.06861 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00075 * 5.53840 * 15 14 13 17 17 H 1.08003 * 120.00029 * 354.94359 * 16 15 14 18 18 C 1.38659 * 120.00122 * 174.94542 * 16 15 14 19 19 N 1.31558 * 119.99705 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00035 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47181 * 89.99980 * 20 18 16 22 22 H 1.48498 * 109.47260 * 210.00361 * 20 18 16 23 23 H 1.48502 * 109.47130 * 330.00179 * 20 18 16 24 24 C 1.38880 * 119.86555 * 0.27954 * 14 13 12 25 25 C 1.38102 * 119.92551 * 359.44514 * 24 14 13 26 26 H 1.09001 * 109.47382 * 296.04509 * 1 2 3 27 27 H 1.08994 * 109.47138 * 56.04951 * 1 2 3 28 28 H 1.09001 * 109.46680 * 176.04340 * 1 2 3 29 29 H 1.08996 * 109.47532 * 183.95159 * 3 2 1 30 30 H 1.09005 * 109.46987 * 303.95857 * 3 2 1 31 31 H 1.09004 * 109.46716 * 63.95122 * 3 2 1 32 32 H 1.08991 * 109.46964 * 306.05157 * 4 2 1 33 33 H 1.09006 * 109.46913 * 186.04717 * 4 2 1 34 34 H 1.09004 * 109.47441 * 60.00080 * 5 4 2 35 35 H 1.08996 * 109.47476 * 299.99581 * 5 4 2 36 36 H 0.96998 * 119.99952 * 0.02562 * 6 5 4 37 37 H 0.96998 * 120.00328 * 0.02562 * 9 7 6 38 38 H 1.08986 * 109.47314 * 59.99652 * 10 9 7 39 39 H 1.09005 * 109.46923 * 299.99397 * 10 9 7 40 40 H 1.07999 * 119.96326 * 0.02562 * 12 11 10 41 41 H 1.07997 * 120.03156 * 180.02562 * 13 12 11 42 42 H 0.96997 * 119.99350 * 179.97438 * 19 18 16 43 43 H 1.07996 * 120.04097 * 179.72435 * 24 14 13 44 44 H 1.07997 * 119.96688 * 180.27743 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2425 0.9703 6 7 2.1570 -3.0066 2.1045 7 6 1.9558 -4.3376 2.1717 8 16 1.0866 -5.1355 0.9312 9 7 2.4389 -5.0403 3.2153 10 6 2.2206 -6.4872 3.2880 11 6 2.8554 -7.0284 4.5430 12 6 2.1233 -7.0920 5.7147 13 6 2.7021 -7.5880 6.8662 14 6 4.0209 -8.0228 6.8471 15 8 4.5925 -8.5114 7.9773 16 6 3.7941 -8.6550 9.0542 17 1 2.7713 -8.3100 9.0180 18 6 4.2861 -9.2456 10.2083 19 7 3.5068 -9.3861 11.2588 20 14 6.0549 -9.8428 10.2707 21 1 6.9308 -8.7462 10.7558 22 1 6.1539 -11.0011 11.1947 23 1 6.4861 -10.2561 8.9111 24 6 4.7555 -7.9518 5.6706 25 6 4.1692 -7.4601 4.5209 26 1 -0.3634 0.4512 0.9233 27 1 -0.3633 0.5739 -0.8524 28 1 -0.3633 -1.0253 -0.0709 29 1 3.0827 1.3433 -0.0708 30 1 1.5897 1.9164 -0.8524 31 1 1.7043 1.8723 0.9233 32 1 1.5611 -0.3873 2.0627 33 1 3.0798 -0.6610 1.1756 34 1 2.0659 -2.6213 0.0451 35 1 0.5473 -2.3475 0.9323 36 1 2.6492 -2.5544 2.8075 37 1 2.9310 -4.5881 3.9183 38 1 2.6689 -6.9664 2.4178 39 1 1.1503 -6.6927 3.3050 40 1 1.0976 -6.7541 5.7288 41 1 2.1297 -7.6378 7.7807 42 1 3.8509 -9.7996 12.0660 43 1 5.7826 -8.2850 5.6536 44 1 4.7385 -7.4087 3.6046 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727660553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:50 Heat of formation + Delta-G solvation = 1.838519 kcal Electronic energy + Delta-G solvation = -23404.693501 eV Core-core repulsion = 19869.298503 eV Total energy + Delta-G solvation = -3535.394998 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.06736 -40.16630 -38.93686 -38.16352 -36.10890 -34.48873 -32.17459 -31.86424 -30.25990 -28.50405 -27.79204 -26.30100 -24.91822 -24.59366 -23.75574 -22.24032 -22.18382 -19.90699 -19.48911 -19.10213 -18.33873 -16.96209 -16.76401 -16.59453 -16.51139 -16.11844 -15.81222 -15.77624 -15.58614 -15.53244 -15.03596 -14.91753 -14.85294 -14.36352 -14.14054 -14.05148 -13.30539 -13.24732 -13.12785 -12.76713 -12.65058 -12.56792 -12.53590 -12.41709 -12.39616 -12.19403 -11.97256 -11.90105 -11.32337 -10.94339 -10.05500 -9.87376 -9.39304 -9.19537 -9.06592 -8.66712 -8.52749 -6.26092 0.37263 0.40861 0.51350 0.93784 1.31754 1.34688 1.50870 1.57745 2.25787 2.50064 2.78971 2.98740 3.13285 3.15529 3.71371 3.76253 3.97566 3.99123 4.10505 4.27560 4.38358 4.40113 4.49609 4.50578 4.62817 4.66157 4.68610 4.76994 4.77464 4.88462 4.92074 4.98455 5.04081 5.08383 5.18417 5.29558 5.45740 5.52876 5.65873 5.75630 5.84670 5.88000 5.99583 6.00816 6.15423 6.39886 6.81173 7.53290 8.58261 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023648 B = 0.001929 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.732990 B =14512.333834 C =14944.873359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.557 5.557 3 C 0.025 3.975 4 C 0.049 3.951 5 C 0.135 3.865 6 N -0.667 5.667 7 C 0.584 3.416 8 S -0.736 6.736 9 N -0.660 5.660 10 C 0.193 3.807 11 C -0.179 4.179 12 C -0.046 4.046 13 C -0.239 4.239 14 C 0.132 3.868 15 O -0.241 6.241 16 C -0.400 4.400 17 H 0.084 0.916 18 C 0.011 3.989 19 N -0.920 5.920 20 Si 0.970 3.030 21 H -0.265 1.265 22 H -0.270 1.270 23 H -0.261 1.261 24 C -0.193 4.193 25 C -0.041 4.041 26 H 0.031 0.969 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.415 0.585 37 H 0.413 0.587 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.135 0.865 41 H 0.110 0.890 42 H 0.285 0.715 43 H 0.131 0.869 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.053 20.231 -19.150 27.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.282 5.282 3 C -0.123 4.123 4 C -0.080 4.080 5 C 0.011 3.989 6 N -0.298 5.298 7 C 0.219 3.781 8 S -0.613 6.613 9 N -0.288 5.288 10 C 0.070 3.930 11 C -0.181 4.181 12 C -0.064 4.064 13 C -0.259 4.259 14 C 0.082 3.918 15 O -0.148 6.148 16 C -0.476 4.476 17 H 0.101 0.899 18 C -0.188 4.188 19 N -0.560 5.560 20 Si 0.792 3.208 21 H -0.190 1.190 22 H -0.195 1.195 23 H -0.185 1.185 24 C -0.212 4.212 25 C -0.059 4.059 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.255 0.745 37 H 0.252 0.748 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.152 0.848 41 H 0.128 0.872 42 H 0.095 0.905 43 H 0.149 0.851 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.211 19.309 -20.199 27.944 hybrid contribution 0.614 0.632 2.730 2.869 sum 0.404 19.941 -17.468 26.513 Atomic orbital electron populations 1.22520 0.86654 1.02687 1.01249 1.61813 1.08817 1.15096 1.42439 1.22438 1.01251 0.87329 1.01260 1.22223 1.01730 0.91306 0.92693 1.21531 0.99915 0.89875 0.87570 1.44724 1.54794 1.03757 1.26547 1.21559 0.83757 0.84904 0.87871 1.93731 1.56496 1.73506 1.37575 1.45191 1.52812 1.09825 1.21008 1.20231 1.01333 0.76366 0.95062 1.19492 0.95264 1.08831 0.94497 1.20936 0.99515 0.95116 0.90878 1.21272 0.95919 1.08414 1.00263 1.19768 0.92546 0.92573 0.86894 1.83522 1.38267 1.74837 1.18130 1.20708 0.96002 1.41165 0.89755 0.89896 1.25295 1.03917 0.96018 0.93583 1.69727 1.38280 1.43978 1.04029 0.85219 0.78069 0.78579 0.78897 1.18984 1.19487 1.18543 1.20523 1.01188 1.08907 0.90543 1.20971 0.93868 0.94089 0.96981 0.95042 0.90394 0.91448 0.90561 0.90493 0.95037 0.93131 0.88746 0.90379 0.90795 0.74519 0.74794 0.88940 0.89794 0.84762 0.87249 0.90524 0.85068 0.82739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.32 127.69 1.19 1.37 16 2 N -0.56 -6.12 5.02 -948.85 -4.76 -10.88 16 3 C 0.02 0.19 9.57 127.69 1.22 1.41 16 4 C 0.05 0.44 5.07 86.30 0.44 0.87 16 5 C 0.14 1.85 5.05 86.38 0.44 2.29 16 6 N -0.67 -8.35 5.56 -350.16 -1.95 -10.29 16 7 C 0.58 11.46 7.98 179.06 1.43 12.89 16 8 S -0.74 -22.32 27.77 -56.49 -1.57 -23.89 16 9 N -0.66 -11.10 5.55 -353.91 -1.97 -13.07 16 10 C 0.19 4.04 5.25 85.63 0.45 4.49 16 11 C -0.18 -4.45 5.25 -19.83 -0.10 -4.55 16 12 C -0.05 -1.37 9.69 22.25 0.22 -1.15 16 13 C -0.24 -9.50 9.17 22.39 0.21 -9.30 16 14 C 0.13 5.63 6.65 22.58 0.15 5.78 16 15 O -0.24 -12.30 8.59 -22.72 -0.20 -12.50 16 16 C -0.40 -22.53 9.95 67.92 0.68 -21.85 16 17 H 0.08 4.89 5.44 -2.91 -0.02 4.87 16 18 C 0.01 0.61 5.49 84.83 0.47 1.07 16 19 N -0.92 -53.37 13.96 21.61 0.30 -53.07 16 20 Si 0.97 43.69 28.62 68.60 1.96 45.65 16 21 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 24 C -0.19 -6.44 9.99 22.39 0.22 -6.22 16 25 C -0.04 -1.04 9.69 22.25 0.22 -0.82 16 26 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.08 0.70 8.12 -2.39 -0.02 0.68 16 28 H 0.07 0.84 6.47 -2.39 -0.02 0.83 16 29 H 0.08 0.48 8.12 -2.39 -0.02 0.46 16 30 H 0.08 0.51 8.12 -2.38 -0.02 0.49 16 31 H 0.03 0.21 8.14 -2.38 -0.02 0.19 16 32 H 0.05 0.38 8.12 -2.39 -0.02 0.36 16 33 H 0.09 0.62 8.06 -2.38 -0.02 0.60 16 34 H 0.08 1.42 7.99 -2.39 -0.02 1.40 16 35 H 0.07 1.27 6.40 -2.39 -0.02 1.26 16 36 H 0.42 2.45 8.49 -92.71 -0.79 1.66 16 37 H 0.41 5.12 8.48 -92.71 -0.79 4.33 16 38 H 0.09 2.01 7.93 -2.39 -0.02 2.00 16 39 H 0.08 1.96 7.93 -2.38 -0.02 1.94 16 40 H 0.13 3.43 8.06 -2.91 -0.02 3.40 16 41 H 0.11 4.89 5.64 -2.91 -0.02 4.88 16 42 H 0.29 15.19 8.31 -92.71 -0.77 14.42 16 43 H 0.13 4.07 8.06 -2.91 -0.02 4.04 16 44 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -71.77 378.61 -1.51 -73.28 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -0.55 Total: 18.47 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 7.21 Total: -13.71 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -8.37 Total: -87.31 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.20 Total: -12.50 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.96 Total: 45.65 kcal Atomic # 16 Polarization: -22.32 SS G_CDS: -1.57 Total: -23.89 kcal Total: -71.77 -1.51 -73.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727660553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.119 kcal (2) G-P(sol) polarization free energy of solvation -71.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds