Wall clock time and date at job start Tue Mar 31 2020 14:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99752 * 2 1 4 4 C 1.53000 * 109.46975 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46913 * 65.00321 * 4 3 2 6 6 C 1.46499 * 119.99794 * 269.99748 * 5 4 3 7 7 C 1.50703 * 109.47126 * 270.00247 * 6 5 4 8 8 H 1.07999 * 120.00029 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99889 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00192 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99795 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47430 * 60.00091 * 11 9 7 13 13 H 1.48504 * 109.46997 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47214 * 299.99538 * 11 9 7 15 15 C 1.34774 * 120.00244 * 90.00439 * 5 4 3 16 16 S 1.71195 * 120.00092 * 179.97438 * 15 5 4 17 17 N 1.34777 * 119.99898 * 359.97438 * 15 5 4 18 18 C 1.46496 * 120.00258 * 180.02562 * 17 15 5 19 19 C 1.53002 * 109.47421 * 180.02562 * 18 17 15 20 20 C 1.50706 * 109.46925 * 180.02562 * 19 18 17 21 21 C 1.38676 * 120.41823 * 269.72219 * 20 19 18 22 22 C 1.38621 * 118.41711 * 179.78578 * 21 20 19 23 23 C 1.38230 * 119.16265 * 0.51209 * 22 21 20 24 24 N 1.31844 * 120.76473 * 359.72963 * 23 22 21 25 25 C 1.31891 * 121.72676 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46997 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47461 * 300.00124 * 1 2 3 28 28 H 1.09003 * 109.47074 * 60.00313 * 1 2 3 29 29 H 1.08997 * 109.47088 * 60.00028 * 3 2 1 30 30 H 1.09004 * 109.47370 * 299.99678 * 3 2 1 31 31 H 1.08996 * 109.47306 * 305.00163 * 4 3 2 32 32 H 1.09001 * 109.46783 * 185.00170 * 4 3 2 33 33 H 1.08998 * 109.47388 * 29.99897 * 6 5 4 34 34 H 1.08993 * 109.47115 * 150.00415 * 6 5 4 35 35 H 0.97000 * 119.99742 * 180.02562 * 10 9 7 36 36 H 0.97008 * 120.00336 * 0.02562 * 17 15 5 37 37 H 1.09004 * 109.46875 * 60.00324 * 18 17 15 38 38 H 1.09004 * 109.47522 * 300.00473 * 18 17 15 39 39 H 1.09000 * 109.46497 * 60.00401 * 19 18 17 40 40 H 1.09000 * 109.47312 * 300.00180 * 19 18 17 41 41 H 1.08002 * 120.78654 * 0.02562 * 21 20 19 42 42 H 1.08002 * 120.42153 * 180.21740 * 22 21 20 43 43 H 1.08005 * 119.61673 * 179.74765 * 23 22 21 44 44 H 1.07994 * 119.61862 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1063 -0.8924 -1.3404 7 6 5.5017 -1.2980 -0.9413 8 1 6.2201 -0.5461 -0.6497 9 6 5.8614 -2.6290 -0.9483 10 7 4.9865 -3.5448 -1.3028 11 14 7.5909 -3.1318 -0.4529 12 1 7.8523 -2.6970 0.9428 13 1 7.7224 -4.6082 -0.5437 14 1 8.5729 -2.4901 -1.3634 15 6 4.2634 1.3330 -2.3200 16 16 4.7796 0.6078 -3.7823 17 7 4.1437 2.6729 -2.2379 18 6 4.4549 3.5088 -3.4000 19 6 4.2391 4.9806 -3.0422 20 6 4.5585 5.8404 -4.2380 21 6 5.8435 6.3247 -4.4313 22 6 6.0923 7.1079 -5.5477 23 6 5.0562 7.3870 -6.4192 24 7 3.8453 6.9134 -6.2009 25 6 3.5735 6.1604 -5.1527 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5686 0.8426 32 1 3.9783 2.1766 0.0902 33 1 3.3858 -1.3631 -0.6714 34 1 3.9139 -1.2121 -2.3645 35 1 5.2395 -4.4812 -1.3074 36 1 3.8516 3.0840 -1.4091 37 1 3.8013 3.2364 -4.2288 38 1 5.4940 3.3545 -3.6909 39 1 4.8929 5.2526 -2.2136 40 1 3.2001 5.1353 -2.7511 41 1 6.6325 6.0940 -3.7308 42 1 7.0820 7.4991 -5.7318 43 1 5.2409 7.9998 -7.2891 44 1 2.5695 5.7903 -5.0073 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728449690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:30 Heat of formation + Delta-G solvation = 12.286625 kcal Electronic energy + Delta-G solvation = -24599.339050 eV Core-core repulsion = 21064.397116 eV Total energy + Delta-G solvation = -3534.941935 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.45307 -39.19454 -37.52469 -35.96044 -33.69381 -32.55628 -32.14714 -30.39461 -29.14919 -26.98386 -26.26403 -24.37983 -23.82198 -23.66509 -22.69728 -21.86519 -20.48680 -17.75148 -17.31176 -16.90825 -16.72294 -16.46432 -16.11796 -15.80124 -15.31944 -15.07313 -14.80638 -14.63321 -14.26992 -13.94980 -13.78998 -13.46995 -13.30291 -13.19491 -12.54327 -12.32373 -12.18613 -12.06926 -11.83064 -11.77165 -11.35731 -11.07180 -10.99034 -10.71687 -10.53562 -10.18398 -10.06213 -10.03536 -9.69436 -9.62674 -9.56031 -9.23193 -8.33754 -8.16888 -6.88464 -6.34740 -5.94314 -3.97337 0.82641 1.02830 2.23214 2.74167 3.35058 3.37933 3.43060 3.47152 3.58650 3.79168 3.81639 4.20817 4.49157 4.52554 4.53987 4.70830 4.72705 4.82012 4.99601 5.01557 5.08717 5.15677 5.21422 5.24726 5.37308 5.38403 5.40297 5.42493 5.51885 5.74175 5.75167 5.85064 5.87821 5.94127 6.04247 6.43209 6.47596 6.70253 7.20513 7.38112 7.61062 7.64091 7.72334 8.00958 8.10101 8.27759 9.00495 9.63941 11.14226 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.003276 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.300992 B = 8544.162958 C =10105.358812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.046 3.954 4 C 0.094 3.906 5 N -0.532 5.532 6 C 0.242 3.758 7 C -0.518 4.518 8 H 0.053 0.947 9 C 0.067 3.933 10 N -0.890 5.890 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.559 3.441 16 S -0.654 6.654 17 N -0.711 5.711 18 C 0.137 3.863 19 C -0.089 4.089 20 C -0.128 4.128 21 C -0.068 4.068 22 C -0.171 4.171 23 C 0.093 3.907 24 N -0.484 5.484 25 C 0.106 3.894 26 H 0.087 0.913 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.263 0.737 36 H 0.386 0.614 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.154 0.846 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.619 22.036 1.555 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C -0.033 4.033 4 C -0.034 4.034 5 N -0.236 5.236 6 C 0.124 3.876 7 C -0.557 4.557 8 H 0.071 0.929 9 C -0.135 4.135 10 N -0.528 5.528 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.200 3.800 16 S -0.526 6.526 17 N -0.346 5.346 18 C 0.013 3.987 19 C -0.128 4.128 20 C -0.130 4.130 21 C -0.094 4.094 22 C -0.190 4.190 23 C -0.063 4.063 24 N -0.192 5.192 25 C -0.051 4.051 26 H 0.106 0.894 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.223 0.777 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.172 0.828 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.874 21.330 0.007 22.124 hybrid contribution 1.124 0.305 2.077 2.381 sum -4.750 21.635 2.084 22.248 Atomic orbital electron populations 1.22728 0.81488 1.02966 0.99234 1.88109 1.19194 1.26232 1.95160 1.22999 0.94217 0.86116 0.99963 1.21815 0.92251 0.99260 0.90054 1.47814 1.58047 1.10756 1.07007 1.19953 0.97582 0.68513 1.01549 1.21123 0.96727 0.92226 1.45664 0.92913 1.24804 0.97198 0.96257 0.95253 1.69924 1.34294 1.01018 1.47590 0.86590 0.85012 0.77329 0.78630 1.20583 1.21243 1.20113 1.22161 0.82619 0.83056 0.92182 1.93172 1.67021 1.77697 1.14671 1.44922 1.70134 1.03875 1.15707 1.21444 1.03448 0.86094 0.87717 1.20751 1.03071 0.93418 0.95558 1.20619 0.94794 0.99510 0.98081 1.21554 0.96251 0.94563 0.97023 1.22159 1.00961 1.00094 0.95831 1.22783 0.88211 0.96898 0.98454 1.67701 1.22325 1.09492 1.19713 1.22711 0.99457 0.93643 0.89272 0.89425 0.94526 0.94425 0.92468 0.93584 0.87475 0.90248 0.93249 0.90797 0.92748 0.77658 0.89924 0.89980 0.90151 0.90066 0.84671 0.84709 0.82832 0.82750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.37 -5.89 9.53 -35.23 -0.34 -6.23 16 3 C 0.05 0.57 6.28 37.16 0.23 0.81 16 4 C 0.09 1.35 5.58 -4.04 -0.02 1.33 16 5 N -0.53 -10.62 2.42 -177.09 -0.43 -11.04 16 6 C 0.24 6.23 4.74 -5.19 -0.02 6.20 16 7 C -0.52 -14.53 9.39 -34.44 -0.32 -14.85 16 8 H 0.05 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 10 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 11 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.56 10.96 7.70 -86.92 -0.67 10.29 16 16 S -0.65 -16.31 27.17 -107.50 -2.92 -19.23 16 17 N -0.71 -9.68 5.42 -62.03 -0.34 -10.02 16 18 C 0.14 1.67 5.11 -4.04 -0.02 1.65 16 19 C -0.09 -0.70 5.49 -27.88 -0.15 -0.86 16 20 C -0.13 -1.14 5.15 -104.48 -0.54 -1.68 16 21 C -0.07 -0.57 9.86 -39.28 -0.39 -0.96 16 22 C -0.17 -1.36 10.11 -39.44 -0.40 -1.75 16 23 C 0.09 0.84 11.18 -17.55 -0.20 0.64 16 24 N -0.48 -5.34 10.36 -13.25 -0.14 -5.48 16 25 C 0.11 1.05 10.86 -17.55 -0.19 0.86 16 26 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.11 1.68 8.07 -51.93 -0.42 1.26 16 32 H 0.08 0.85 6.36 -51.93 -0.33 0.52 16 33 H 0.05 1.33 7.11 -51.93 -0.37 0.96 16 34 H 0.07 2.19 6.58 -51.93 -0.34 1.85 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.39 3.94 6.20 -40.82 -0.25 3.69 16 37 H 0.08 1.14 7.99 -51.93 -0.42 0.73 16 38 H 0.08 1.17 7.99 -51.93 -0.41 0.75 16 39 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 40 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 41 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.16 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 382.52 15.07 5.76 5.76 Total: -1.00 -37.23 382.52 -11.09 -48.32 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.73 Total: 1.69 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -1.68 Total: 5.01 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.17 Total: -52.51 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.34 Total: -6.23 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: -16.31 SS G_CDS: -2.92 Total: -19.23 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.23 -11.09 -48.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728449690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.603 kcal (2) G-P(sol) polarization free energy of solvation -37.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds