Wall clock time and date at job start Tue Mar 31 2020 14:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99752 * 2 1 4 4 C 1.53000 * 109.46975 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46913 * 65.00321 * 4 3 2 6 6 C 1.46499 * 119.99794 * 269.99748 * 5 4 3 7 7 C 1.50703 * 109.47126 * 270.00247 * 6 5 4 8 8 H 1.07999 * 120.00029 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99889 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00192 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99795 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47430 * 60.00091 * 11 9 7 13 13 H 1.48504 * 109.46997 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47214 * 299.99538 * 11 9 7 15 15 C 1.34774 * 120.00244 * 90.00439 * 5 4 3 16 16 S 1.71195 * 120.00092 * 179.97438 * 15 5 4 17 17 N 1.34777 * 119.99898 * 359.97438 * 15 5 4 18 18 C 1.46496 * 120.00258 * 180.02562 * 17 15 5 19 19 C 1.53002 * 109.47421 * 180.02562 * 18 17 15 20 20 C 1.50706 * 109.46925 * 180.02562 * 19 18 17 21 21 C 1.38676 * 120.41823 * 269.72219 * 20 19 18 22 22 C 1.38621 * 118.41711 * 179.78578 * 21 20 19 23 23 C 1.38230 * 119.16265 * 0.51209 * 22 21 20 24 24 N 1.31844 * 120.76473 * 359.72963 * 23 22 21 25 25 C 1.31891 * 121.72676 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46997 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47461 * 300.00124 * 1 2 3 28 28 H 1.09003 * 109.47074 * 60.00313 * 1 2 3 29 29 H 1.08997 * 109.47088 * 60.00028 * 3 2 1 30 30 H 1.09004 * 109.47370 * 299.99678 * 3 2 1 31 31 H 1.08996 * 109.47306 * 305.00163 * 4 3 2 32 32 H 1.09001 * 109.46783 * 185.00170 * 4 3 2 33 33 H 1.08998 * 109.47388 * 29.99897 * 6 5 4 34 34 H 1.08993 * 109.47115 * 150.00415 * 6 5 4 35 35 H 0.97000 * 119.99742 * 180.02562 * 10 9 7 36 36 H 0.97008 * 120.00336 * 0.02562 * 17 15 5 37 37 H 1.09004 * 109.46875 * 60.00324 * 18 17 15 38 38 H 1.09004 * 109.47522 * 300.00473 * 18 17 15 39 39 H 1.09000 * 109.46497 * 60.00401 * 19 18 17 40 40 H 1.09000 * 109.47312 * 300.00180 * 19 18 17 41 41 H 1.08002 * 120.78654 * 0.02562 * 21 20 19 42 42 H 1.08002 * 120.42153 * 180.21740 * 22 21 20 43 43 H 1.08005 * 119.61673 * 179.74765 * 23 22 21 44 44 H 1.07994 * 119.61862 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1063 -0.8924 -1.3404 7 6 5.5017 -1.2980 -0.9413 8 1 6.2201 -0.5461 -0.6497 9 6 5.8614 -2.6290 -0.9483 10 7 4.9865 -3.5448 -1.3028 11 14 7.5909 -3.1318 -0.4529 12 1 7.8523 -2.6970 0.9428 13 1 7.7224 -4.6082 -0.5437 14 1 8.5729 -2.4901 -1.3634 15 6 4.2634 1.3330 -2.3200 16 16 4.7796 0.6078 -3.7823 17 7 4.1437 2.6729 -2.2379 18 6 4.4549 3.5088 -3.4000 19 6 4.2391 4.9806 -3.0422 20 6 4.5585 5.8404 -4.2380 21 6 5.8435 6.3247 -4.4313 22 6 6.0923 7.1079 -5.5477 23 6 5.0562 7.3870 -6.4192 24 7 3.8453 6.9134 -6.2009 25 6 3.5735 6.1604 -5.1527 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5686 0.8426 32 1 3.9783 2.1766 0.0902 33 1 3.3858 -1.3631 -0.6714 34 1 3.9139 -1.2121 -2.3645 35 1 5.2395 -4.4812 -1.3074 36 1 3.8516 3.0840 -1.4091 37 1 3.8013 3.2364 -4.2288 38 1 5.4940 3.3545 -3.6909 39 1 4.8929 5.2526 -2.2136 40 1 3.2001 5.1353 -2.7511 41 1 6.6325 6.0940 -3.7308 42 1 7.0820 7.4991 -5.7318 43 1 5.2409 7.9998 -7.2891 44 1 2.5695 5.7903 -5.0073 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728449690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:29 Heat of formation + Delta-G solvation = -12.729766 kcal Electronic energy + Delta-G solvation = -24600.423842 eV Core-core repulsion = 21064.397116 eV Total energy + Delta-G solvation = -3536.026727 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.15232 -40.59209 -38.62645 -37.22216 -35.00584 -34.24706 -32.84389 -31.68359 -30.31610 -28.60967 -27.32077 -25.66463 -24.88813 -24.48471 -24.34777 -22.74458 -21.82099 -19.08481 -18.67400 -18.26806 -17.91869 -17.42487 -17.21807 -16.94066 -16.58607 -16.33448 -15.98814 -15.85731 -15.53033 -15.23517 -14.76092 -14.70181 -14.21917 -13.92416 -13.91589 -13.67659 -13.28962 -13.18777 -13.07526 -12.88091 -12.80122 -12.59803 -12.46812 -12.18132 -12.12526 -11.99715 -11.89120 -11.50814 -10.71383 -10.63176 -10.53925 -10.37242 -9.90550 -9.69816 -8.79844 -8.31548 -8.13083 -6.24348 0.16151 0.37500 0.61445 1.14384 1.38776 1.44925 1.50542 1.81536 2.39770 2.50335 2.83855 2.88867 3.19446 3.58693 3.85809 3.88670 3.93985 3.96916 4.01437 4.11613 4.11933 4.17774 4.33494 4.34845 4.48530 4.52953 4.55055 4.68744 4.75581 4.80150 4.86044 4.90864 4.94962 5.10550 5.21911 5.24635 5.37298 5.37475 5.68053 5.80687 5.87384 5.99102 6.10822 6.26470 6.57629 6.81208 7.05620 7.41095 8.94507 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.003276 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.300992 B = 8544.162958 C =10105.358812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.416 6.416 3 C 0.046 3.954 4 C 0.084 3.916 5 N -0.534 5.534 6 C 0.268 3.732 7 C -0.525 4.525 8 H 0.050 0.950 9 C 0.013 3.987 10 N -0.925 5.925 11 Si 0.961 3.039 12 H -0.260 1.260 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.584 3.416 16 S -0.770 6.770 17 N -0.673 5.673 18 C 0.139 3.861 19 C -0.072 4.072 20 C -0.135 4.135 21 C -0.076 4.076 22 C -0.171 4.171 23 C 0.080 3.920 24 N -0.516 5.516 25 C 0.090 3.910 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.104 0.896 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.128 0.872 33 H 0.034 0.966 34 H 0.028 0.972 35 H 0.264 0.736 36 H 0.413 0.587 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.153 0.847 42 H 0.160 0.840 43 H 0.174 0.826 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.291 24.990 4.065 25.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.335 6.335 3 C -0.032 4.032 4 C -0.040 4.040 5 N -0.238 5.238 6 C 0.147 3.853 7 C -0.564 4.564 8 H 0.069 0.931 9 C -0.186 4.186 10 N -0.565 5.565 11 Si 0.786 3.214 12 H -0.184 1.184 13 H -0.207 1.207 14 H -0.208 1.208 15 C 0.219 3.781 16 S -0.643 6.643 17 N -0.308 5.308 18 C 0.016 3.984 19 C -0.110 4.110 20 C -0.137 4.137 21 C -0.102 4.102 22 C -0.191 4.191 23 C -0.076 4.076 24 N -0.225 5.225 25 C -0.067 4.067 26 H 0.099 0.901 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.121 0.879 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.145 0.855 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.254 0.746 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.171 0.829 42 H 0.178 0.822 43 H 0.191 0.809 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.577 24.374 2.575 25.136 hybrid contribution 0.960 -0.483 1.320 1.702 sum -4.617 23.890 3.895 24.642 Atomic orbital electron populations 1.22855 0.79701 1.03219 1.00892 1.88048 1.21390 1.28548 1.95556 1.23130 0.92221 0.85360 1.02446 1.22290 0.94322 1.00825 0.86589 1.47549 1.58018 1.09147 1.09059 1.19204 0.96157 0.71875 0.98112 1.21390 0.97566 0.92353 1.45103 0.93142 1.25683 1.01189 0.96449 0.95325 1.70056 1.36349 1.01301 1.48809 0.85566 0.79778 0.77021 0.78985 1.18421 1.20737 1.20769 1.21435 0.81821 0.84862 0.89933 1.93405 1.71764 1.79849 1.19293 1.44759 1.67303 1.01426 1.17316 1.21514 1.01768 0.88535 0.86622 1.20660 1.05246 0.89354 0.95781 1.20705 0.94933 0.99793 0.98296 1.21903 0.96531 0.94287 0.97517 1.22475 1.01844 0.99511 0.95264 1.23220 0.88005 0.97007 0.99409 1.67689 1.23628 1.10596 1.20611 1.22974 1.00380 0.93899 0.89450 0.90116 0.91605 0.93852 0.87864 0.92851 0.88550 0.85479 0.94767 0.95434 0.92726 0.74605 0.91796 0.91974 0.87737 0.87644 0.82928 0.82203 0.80922 0.81869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.90 16 2 O -0.42 -12.79 9.53 -148.98 -1.42 -14.21 16 3 C 0.05 1.00 6.28 71.98 0.45 1.45 16 4 C 0.08 2.20 5.58 86.38 0.48 2.68 16 5 N -0.53 -21.05 2.42 -714.19 -1.73 -22.78 16 6 C 0.27 14.20 4.74 85.63 0.41 14.60 16 7 C -0.53 -29.96 9.39 25.60 0.24 -29.72 16 8 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 9 C 0.01 0.73 5.46 84.65 0.46 1.20 16 10 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 11 Si 0.96 45.97 29.54 68.60 2.03 48.00 16 12 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 13 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 14 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 15 C 0.58 22.66 7.70 179.06 1.38 24.04 16 16 S -0.77 -40.22 27.17 -56.49 -1.53 -41.76 16 17 N -0.67 -16.61 5.42 -350.17 -1.90 -18.51 16 18 C 0.14 3.16 5.11 86.38 0.44 3.60 16 19 C -0.07 -0.88 5.49 29.85 0.16 -0.72 16 20 C -0.13 -2.14 5.15 -19.77 -0.10 -2.24 16 21 C -0.08 -1.12 9.86 22.47 0.22 -0.90 16 22 C -0.17 -2.39 10.11 22.36 0.23 -2.16 16 23 C 0.08 1.34 11.18 84.69 0.95 2.29 16 24 N -0.52 -11.10 10.36 -195.85 -2.03 -13.13 16 25 C 0.09 1.67 10.86 84.67 0.92 2.59 16 26 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.10 2.80 8.07 -2.39 -0.02 2.78 16 32 H 0.13 2.03 6.36 -2.39 -0.02 2.02 16 33 H 0.03 1.92 7.11 -2.39 -0.02 1.90 16 34 H 0.03 1.73 6.58 -2.39 -0.02 1.72 16 35 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 36 H 0.41 6.40 6.20 -92.70 -0.58 5.83 16 37 H 0.06 1.76 7.99 -2.38 -0.02 1.74 16 38 H 0.06 1.73 7.99 -2.39 -0.02 1.71 16 39 H 0.10 0.86 8.09 -2.39 -0.02 0.84 16 40 H 0.11 0.85 8.09 -2.39 -0.02 0.83 16 41 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 42 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 43 H 0.17 1.98 8.06 -2.91 -0.02 1.95 16 44 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -88.24 382.52 1.61 -86.63 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.42 Total: 14.06 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 7.49 Total: 18.61 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -5.37 Total: -111.33 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -1.42 Total: -14.21 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 16 Polarization: -40.22 SS G_CDS: -1.53 Total: -41.76 kcal Total: -88.24 1.61 -86.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728449690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.902 kcal (2) G-P(sol) polarization free energy of solvation -88.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds