Wall clock time and date at job start Tue Mar 31 2020 14:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00045 * 2 1 4 4 C 1.53004 * 109.47137 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46967 * 65.00427 * 4 3 2 6 6 C 1.46498 * 119.99678 * 270.00036 * 5 4 3 7 7 C 1.50703 * 109.47245 * 270.00017 * 6 5 4 8 8 H 1.08005 * 119.99650 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00298 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00192 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00005 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47280 * 89.99493 * 11 9 7 13 13 H 1.48497 * 109.47459 * 209.99891 * 11 9 7 14 14 H 1.48499 * 109.47187 * 329.99945 * 11 9 7 15 15 C 1.34774 * 120.00678 * 89.99619 * 5 4 3 16 16 S 1.71202 * 119.99572 * 0.02562 * 15 5 4 17 17 N 1.34778 * 120.00506 * 179.97438 * 15 5 4 18 18 C 1.46496 * 119.99813 * 180.02562 * 17 15 5 19 19 C 1.52999 * 109.46662 * 180.02562 * 18 17 15 20 20 C 1.50706 * 109.47163 * 180.02562 * 19 18 17 21 21 C 1.38225 * 119.61903 * 124.72524 * 20 19 18 22 22 C 1.38628 * 119.15868 * 179.75305 * 21 20 19 23 23 C 1.38681 * 118.42043 * 0.51112 * 22 21 20 24 24 C 1.38179 * 119.15955 * 359.73317 * 23 22 21 25 25 N 1.31858 * 119.61572 * 305.00069 * 20 19 18 26 26 H 1.08999 * 109.46913 * 60.00434 * 1 2 3 27 27 H 1.09005 * 109.46786 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46867 * 299.99620 * 1 2 3 29 29 H 1.09004 * 109.47248 * 60.00005 * 3 2 1 30 30 H 1.08996 * 109.47404 * 300.00192 * 3 2 1 31 31 H 1.08993 * 109.47111 * 304.99895 * 4 3 2 32 32 H 1.09000 * 109.46916 * 184.99626 * 4 3 2 33 33 H 1.09002 * 109.47241 * 29.99665 * 6 5 4 34 34 H 1.09000 * 109.47314 * 150.00250 * 6 5 4 35 35 H 0.97003 * 120.00106 * 180.02562 * 10 9 7 36 36 H 0.96998 * 119.99136 * 359.97438 * 17 15 5 37 37 H 1.09001 * 109.47282 * 60.00376 * 18 17 15 38 38 H 1.08995 * 109.47185 * 299.99757 * 18 17 15 39 39 H 1.08997 * 109.47394 * 59.99835 * 19 18 17 40 40 H 1.09004 * 109.47644 * 299.99906 * 19 18 17 41 41 H 1.07994 * 120.42134 * 359.97438 * 21 20 19 42 42 H 1.08000 * 120.79027 * 180.26248 * 22 21 20 43 43 H 1.07997 * 120.41814 * 179.70894 * 23 22 21 44 44 H 1.08004 * 119.61107 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1062 -0.8925 -1.3404 7 6 5.5017 -1.2982 -0.9413 8 1 6.2203 -0.5462 -0.6505 9 6 5.8613 -2.6292 -0.9483 10 7 4.9865 -3.5449 -1.3028 11 14 7.5912 -3.1319 -0.4543 12 1 7.6347 -3.3842 1.0085 13 1 7.9741 -4.3687 -1.1815 14 1 8.5402 -2.0424 -0.7970 15 6 4.2633 1.3329 -2.3201 16 16 4.1125 3.0350 -2.2154 17 7 4.6697 0.7619 -3.4713 18 6 4.9818 1.5978 -4.6332 19 6 5.4146 0.7079 -5.8001 20 6 5.7363 1.5678 -6.9952 21 6 6.9749 1.4617 -7.5996 22 6 7.2588 2.2535 -8.7015 23 6 6.2857 3.1342 -9.1498 24 6 5.0721 3.1887 -8.4913 25 7 4.8349 2.4166 -7.4489 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8508 0.5685 0.8427 32 1 3.9785 2.1765 0.0901 33 1 3.3858 -1.3631 -0.6713 34 1 3.9139 -1.2122 -2.3645 35 1 5.2394 -4.4813 -1.3074 36 1 4.7562 -0.2024 -3.5302 37 1 5.7897 2.2845 -4.3803 38 1 4.0974 2.1669 -4.9194 39 1 4.6065 0.0215 -6.0528 40 1 6.2990 0.1384 -5.5142 41 1 7.7107 0.7682 -7.2205 42 1 8.2164 2.1891 -9.1967 43 1 6.4743 3.7695 -10.0025 44 1 4.3090 3.8716 -8.8345 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728450364.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:27 Heat of formation + Delta-G solvation = 1.504910 kcal Electronic energy + Delta-G solvation = -24747.216206 eV Core-core repulsion = 21211.806741 eV Total energy + Delta-G solvation = -3535.409465 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.33278 -38.89328 -37.38527 -35.65935 -33.19501 -32.92624 -32.41153 -30.07312 -28.92796 -27.55480 -25.95860 -24.38493 -23.82425 -23.48784 -22.46594 -21.59156 -20.33412 -17.45729 -17.11959 -16.75200 -16.69772 -16.34156 -15.89430 -15.62999 -15.36550 -15.01815 -14.80034 -14.54543 -14.33135 -13.75815 -13.67655 -13.40610 -13.22559 -12.87531 -12.35263 -12.22184 -11.99015 -11.80411 -11.77186 -11.53944 -11.44727 -11.18894 -10.95610 -10.77060 -10.60449 -10.55412 -10.08874 -10.00481 -9.77586 -9.50645 -9.35033 -9.09758 -8.72741 -8.07554 -7.08445 -6.80674 -6.32312 -4.43300 0.96152 1.15117 2.29423 2.72355 3.14198 3.21920 3.25294 3.33022 3.68212 4.02019 4.14643 4.21077 4.27889 4.62497 4.70965 4.90939 4.95956 5.00181 5.14863 5.25815 5.37255 5.40123 5.50182 5.57907 5.61975 5.66371 5.71033 5.73188 5.86600 5.92326 6.02311 6.05321 6.16008 6.25945 6.36219 6.46009 6.56323 6.85169 7.07593 7.28270 7.48290 7.58378 7.75793 7.82966 7.89761 8.08657 8.64774 9.25336 10.72928 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009355 B = 0.003922 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2992.349858 B = 7138.218999 C = 9217.287043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.049 3.951 4 C 0.119 3.881 5 N -0.536 5.536 6 C 0.228 3.772 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.069 3.931 10 N -0.885 5.885 11 Si 0.900 3.100 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.580 3.420 16 S -0.728 6.728 17 N -0.685 5.685 18 C 0.141 3.859 19 C -0.087 4.087 20 C 0.142 3.858 21 C -0.167 4.167 22 C -0.075 4.075 23 C -0.182 4.182 24 C 0.104 3.896 25 N -0.475 5.475 26 H 0.036 0.964 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.064 0.936 34 H 0.031 0.969 35 H 0.267 0.733 36 H 0.409 0.591 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.747 6.524 -10.446 12.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C -0.029 4.029 4 C -0.005 4.005 5 N -0.239 5.239 6 C 0.106 3.894 7 C -0.586 4.586 8 H 0.082 0.918 9 C -0.135 4.135 10 N -0.523 5.523 11 Si 0.727 3.273 12 H -0.203 1.203 13 H -0.210 1.210 14 H -0.197 1.197 15 C 0.216 3.784 16 S -0.602 6.602 17 N -0.318 5.318 18 C 0.016 3.984 19 C -0.125 4.125 20 C 0.004 3.996 21 C -0.187 4.187 22 C -0.101 4.101 23 C -0.202 4.202 24 C -0.054 4.054 25 N -0.185 5.185 26 H 0.054 0.946 27 H 0.100 0.900 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.135 0.865 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.249 0.751 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.564 7.210 -9.983 12.413 hybrid contribution 1.684 -1.603 -0.321 2.347 sum 0.120 5.607 -10.304 11.731 Atomic orbital electron populations 1.22665 0.81983 1.02283 0.99348 1.88010 1.18881 1.27839 1.95322 1.22957 0.94249 0.84762 1.00929 1.21840 0.92107 1.01363 0.85212 1.47389 1.58294 1.09125 1.09125 1.19760 0.98626 0.72236 0.98735 1.21426 0.96615 0.92760 1.47791 0.91812 1.24928 0.97877 0.96146 0.94550 1.69929 1.34495 1.01396 1.46455 0.86452 0.83786 0.78121 0.78928 1.20284 1.20968 1.19703 1.21784 0.80731 0.93796 0.82104 1.92982 1.80718 0.93173 1.93334 1.44936 1.65697 1.11101 1.10032 1.21393 1.02888 0.92258 0.81857 1.20786 1.03454 0.96998 0.91302 1.20976 0.89823 0.93573 0.95256 1.22025 0.97964 1.01330 0.97399 1.21577 0.99257 0.94055 0.95177 1.22135 0.95308 1.00676 1.02041 1.22772 0.95816 0.95892 0.90885 1.67504 1.33877 1.04965 1.12109 0.94557 0.89994 0.94583 0.92591 0.92191 0.89015 0.86535 0.91810 0.95145 0.92282 0.75093 0.90385 0.89062 0.89121 0.89293 0.84601 0.84902 0.84942 0.82720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.58 16 2 O -0.38 -6.78 9.53 -35.23 -0.34 -7.11 16 3 C 0.05 0.81 6.28 37.16 0.23 1.05 16 4 C 0.12 2.19 5.58 -4.04 -0.02 2.17 16 5 N -0.54 -11.07 2.42 -177.08 -0.43 -11.49 16 6 C 0.23 5.24 4.74 -5.19 -0.02 5.22 16 7 C -0.55 -13.68 9.39 -34.44 -0.32 -14.00 16 8 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 9 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -23.43 13.29 55.43 0.74 -22.70 16 11 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 15 C 0.58 11.96 7.70 -86.92 -0.67 11.29 16 16 S -0.73 -16.13 27.17 -107.50 -2.92 -19.05 16 17 N -0.69 -12.51 5.42 -62.04 -0.34 -12.84 16 18 C 0.14 2.24 4.99 -4.04 -0.02 2.22 16 19 C -0.09 -1.11 5.73 -27.88 -0.16 -1.27 16 20 C 0.14 1.79 6.18 -82.58 -0.51 1.28 16 21 C -0.17 -1.76 9.71 -39.44 -0.38 -2.14 16 22 C -0.07 -0.67 10.18 -39.27 -0.40 -1.07 16 23 C -0.18 -1.59 10.11 -39.44 -0.40 -1.99 16 24 C 0.10 1.10 11.18 -17.55 -0.20 0.90 16 25 N -0.48 -6.36 9.88 -9.47 -0.09 -6.46 16 26 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.09 1.69 8.07 -51.93 -0.42 1.27 16 32 H 0.12 2.17 6.58 -51.93 -0.34 1.83 16 33 H 0.06 1.60 7.11 -51.93 -0.37 1.23 16 34 H 0.03 0.72 6.36 -51.93 -0.33 0.39 16 35 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.41 7.49 6.20 -40.82 -0.25 7.24 16 37 H 0.08 1.34 7.99 -51.93 -0.41 0.93 16 38 H 0.09 1.60 7.80 -51.93 -0.40 1.19 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.09 1.03 7.87 -51.93 -0.41 0.62 16 41 H 0.14 1.18 7.95 -52.49 -0.42 0.76 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 381.87 15.07 5.75 5.75 Total: -1.00 -31.05 381.87 -11.21 -42.26 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.71 Total: 9.86 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -1.86 Total: 6.90 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.12 Total: -53.49 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.34 Total: -7.11 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: -16.13 SS G_CDS: -2.92 Total: -19.05 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.05 -11.21 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728450364.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.764 kcal (2) G-P(sol) polarization free energy of solvation -31.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds