Wall clock time and date at job start Tue Mar 31 2020 14:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00045 * 2 1 4 4 C 1.53004 * 109.47137 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46967 * 65.00427 * 4 3 2 6 6 C 1.46498 * 119.99678 * 270.00036 * 5 4 3 7 7 C 1.50703 * 109.47245 * 270.00017 * 6 5 4 8 8 H 1.08005 * 119.99650 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00298 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00192 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00005 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47280 * 89.99493 * 11 9 7 13 13 H 1.48497 * 109.47459 * 209.99891 * 11 9 7 14 14 H 1.48499 * 109.47187 * 329.99945 * 11 9 7 15 15 C 1.34774 * 120.00678 * 89.99619 * 5 4 3 16 16 S 1.71202 * 119.99572 * 0.02562 * 15 5 4 17 17 N 1.34778 * 120.00506 * 179.97438 * 15 5 4 18 18 C 1.46496 * 119.99813 * 180.02562 * 17 15 5 19 19 C 1.52999 * 109.46662 * 180.02562 * 18 17 15 20 20 C 1.50706 * 109.47163 * 180.02562 * 19 18 17 21 21 C 1.38225 * 119.61903 * 124.72524 * 20 19 18 22 22 C 1.38628 * 119.15868 * 179.75305 * 21 20 19 23 23 C 1.38681 * 118.42043 * 0.51112 * 22 21 20 24 24 C 1.38179 * 119.15955 * 359.73317 * 23 22 21 25 25 N 1.31858 * 119.61572 * 305.00069 * 20 19 18 26 26 H 1.08999 * 109.46913 * 60.00434 * 1 2 3 27 27 H 1.09005 * 109.46786 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46867 * 299.99620 * 1 2 3 29 29 H 1.09004 * 109.47248 * 60.00005 * 3 2 1 30 30 H 1.08996 * 109.47404 * 300.00192 * 3 2 1 31 31 H 1.08993 * 109.47111 * 304.99895 * 4 3 2 32 32 H 1.09000 * 109.46916 * 184.99626 * 4 3 2 33 33 H 1.09002 * 109.47241 * 29.99665 * 6 5 4 34 34 H 1.09000 * 109.47314 * 150.00250 * 6 5 4 35 35 H 0.97003 * 120.00106 * 180.02562 * 10 9 7 36 36 H 0.96998 * 119.99136 * 359.97438 * 17 15 5 37 37 H 1.09001 * 109.47282 * 60.00376 * 18 17 15 38 38 H 1.08995 * 109.47185 * 299.99757 * 18 17 15 39 39 H 1.08997 * 109.47394 * 59.99835 * 19 18 17 40 40 H 1.09004 * 109.47644 * 299.99906 * 19 18 17 41 41 H 1.07994 * 120.42134 * 359.97438 * 21 20 19 42 42 H 1.08000 * 120.79027 * 180.26248 * 22 21 20 43 43 H 1.07997 * 120.41814 * 179.70894 * 23 22 21 44 44 H 1.08004 * 119.61107 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1062 -0.8925 -1.3404 7 6 5.5017 -1.2982 -0.9413 8 1 6.2203 -0.5462 -0.6505 9 6 5.8613 -2.6292 -0.9483 10 7 4.9865 -3.5449 -1.3028 11 14 7.5912 -3.1319 -0.4543 12 1 7.6347 -3.3842 1.0085 13 1 7.9741 -4.3687 -1.1815 14 1 8.5402 -2.0424 -0.7970 15 6 4.2633 1.3329 -2.3201 16 16 4.1125 3.0350 -2.2154 17 7 4.6697 0.7619 -3.4713 18 6 4.9818 1.5978 -4.6332 19 6 5.4146 0.7079 -5.8001 20 6 5.7363 1.5678 -6.9952 21 6 6.9749 1.4617 -7.5996 22 6 7.2588 2.2535 -8.7015 23 6 6.2857 3.1342 -9.1498 24 6 5.0721 3.1887 -8.4913 25 7 4.8349 2.4166 -7.4489 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8508 0.5685 0.8427 32 1 3.9785 2.1765 0.0901 33 1 3.3858 -1.3631 -0.6713 34 1 3.9139 -1.2122 -2.3645 35 1 5.2394 -4.4813 -1.3074 36 1 4.7562 -0.2024 -3.5302 37 1 5.7897 2.2845 -4.3803 38 1 4.0974 2.1669 -4.9194 39 1 4.6065 0.0215 -6.0528 40 1 6.2990 0.1384 -5.5142 41 1 7.7107 0.7682 -7.2205 42 1 8.2164 2.1891 -9.1967 43 1 6.4743 3.7695 -10.0025 44 1 4.3090 3.8716 -8.8345 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728450364.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:26 Heat of formation + Delta-G solvation = -15.849090 kcal Electronic energy + Delta-G solvation = -24747.968732 eV Core-core repulsion = 21211.806741 eV Total energy + Delta-G solvation = -3536.161991 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.16705 -40.46046 -38.72075 -37.07287 -34.96484 -34.12309 -33.22417 -31.45258 -30.33533 -29.05579 -27.15330 -25.90885 -25.23211 -24.38768 -23.81580 -22.73217 -21.85308 -19.03194 -18.64937 -18.51398 -17.64844 -17.26009 -17.15544 -16.87077 -16.61429 -16.40988 -16.18837 -15.82222 -15.64414 -15.28171 -14.82838 -14.69509 -14.18951 -13.99459 -13.80859 -13.70971 -13.38434 -13.06732 -13.00983 -12.93785 -12.78875 -12.63431 -12.51580 -12.39395 -12.18735 -12.02614 -11.83129 -11.60410 -10.78074 -10.69859 -10.61585 -10.33340 -9.89838 -9.67732 -8.85984 -8.58039 -8.26714 -6.45469 0.17457 0.40602 0.62703 1.01909 1.39366 1.42717 1.51520 1.80409 2.32946 2.51751 2.87415 2.90889 3.03102 3.36587 3.73951 3.94590 4.05213 4.10042 4.12975 4.14252 4.27250 4.32100 4.37051 4.47964 4.52283 4.54024 4.58792 4.69440 4.74792 4.82607 4.83900 4.90947 4.91976 4.94796 5.10652 5.26981 5.30118 5.32917 5.57144 5.68877 5.83303 5.88350 6.06323 6.26557 6.44685 6.67508 7.09140 7.26770 8.77079 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009355 B = 0.003922 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2992.349858 B = 7138.218999 C = 9217.287043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.412 6.412 3 C 0.059 3.941 4 C 0.116 3.884 5 N -0.537 5.537 6 C 0.248 3.752 7 C -0.555 4.555 8 H 0.053 0.947 9 C 0.031 3.969 10 N -0.912 5.912 11 Si 0.960 3.040 12 H -0.276 1.276 13 H -0.277 1.277 14 H -0.272 1.272 15 C 0.579 3.421 16 S -0.756 6.756 17 N -0.676 5.676 18 C 0.151 3.849 19 C -0.076 4.076 20 C 0.115 3.885 21 C -0.173 4.173 22 C -0.076 4.076 23 C -0.172 4.172 24 C 0.084 3.916 25 N -0.512 5.512 26 H 0.039 0.961 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.043 0.957 34 H 0.024 0.976 35 H 0.271 0.729 36 H 0.410 0.590 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.151 0.849 42 H 0.165 0.835 43 H 0.166 0.834 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.408 6.593 -11.385 13.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.331 6.331 3 C -0.019 4.019 4 C -0.007 4.007 5 N -0.241 5.241 6 C 0.126 3.874 7 C -0.593 4.593 8 H 0.072 0.928 9 C -0.171 4.171 10 N -0.550 5.550 11 Si 0.785 3.215 12 H -0.202 1.202 13 H -0.203 1.203 14 H -0.196 1.196 15 C 0.213 3.787 16 S -0.631 6.631 17 N -0.307 5.307 18 C 0.027 3.973 19 C -0.115 4.115 20 C -0.022 4.022 21 C -0.193 4.193 22 C -0.101 4.101 23 C -0.192 4.192 24 C -0.072 4.072 25 N -0.222 5.222 26 H 0.058 0.942 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.133 0.867 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.250 0.750 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.169 0.831 42 H 0.183 0.817 43 H 0.183 0.817 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -0.416 7.291 -10.933 13.147 hybrid contribution 1.286 -1.589 -0.088 2.046 sum 0.870 5.702 -11.021 12.439 Atomic orbital electron populations 1.22861 0.79895 1.03327 1.00639 1.87962 1.21262 1.28357 1.95553 1.22838 0.92733 0.84665 1.01626 1.21961 0.93688 1.00873 0.84198 1.47379 1.58514 1.08285 1.09916 1.19345 0.97194 0.73319 0.97571 1.21529 0.97133 0.92782 1.47868 0.92842 1.25590 1.01097 0.96068 0.94361 1.70009 1.36101 1.01743 1.47129 0.85528 0.79701 0.77808 0.78490 1.20171 1.20265 1.19631 1.21727 0.80997 0.93251 0.82699 1.92970 1.81890 0.94508 1.93691 1.45093 1.64377 1.11320 1.09954 1.21343 1.01555 0.92417 0.82002 1.20690 1.03834 0.96580 0.90373 1.20946 0.91000 0.94479 0.95805 1.22254 0.97308 1.01848 0.97850 1.22012 1.00559 0.93108 0.94462 1.22516 0.94198 1.00265 1.02187 1.23206 0.97422 0.95999 0.90623 1.67421 1.35046 1.06105 1.13669 0.94223 0.89166 0.92259 0.89565 0.93622 0.89180 0.86705 0.93893 0.95868 0.92023 0.75003 0.91640 0.90761 0.89187 0.88057 0.83080 0.81729 0.81657 0.81020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.41 -14.52 9.53 -148.98 -1.42 -15.94 16 3 C 0.06 1.94 6.28 71.98 0.45 2.40 16 4 C 0.12 4.32 5.58 86.38 0.48 4.80 16 5 N -0.54 -22.55 2.42 -714.17 -1.73 -24.27 16 6 C 0.25 11.61 4.74 85.63 0.41 12.01 16 7 C -0.55 -27.82 9.39 25.60 0.24 -27.58 16 8 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 9 C 0.03 1.55 5.46 84.65 0.46 2.01 16 10 N -0.91 -48.13 13.29 21.45 0.28 -47.85 16 11 Si 0.96 40.31 29.54 68.60 2.03 42.33 16 12 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 13 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 14 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 15 C 0.58 24.30 7.70 179.05 1.38 25.68 16 16 S -0.76 -33.99 27.17 -56.49 -1.53 -35.53 16 17 N -0.68 -25.19 5.42 -350.18 -1.90 -27.09 16 18 C 0.15 4.94 4.99 86.38 0.43 5.37 16 19 C -0.08 -1.97 5.73 29.85 0.17 -1.80 16 20 C 0.12 2.88 6.18 42.55 0.26 3.14 16 21 C -0.17 -3.37 9.71 22.36 0.22 -3.15 16 22 C -0.08 -1.15 10.18 22.47 0.23 -0.92 16 23 C -0.17 -2.58 10.11 22.36 0.23 -2.35 16 24 C 0.08 1.71 11.18 84.67 0.95 2.65 16 25 N -0.51 -13.78 9.88 -183.88 -1.82 -15.60 16 26 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.09 3.35 8.07 -2.39 -0.02 3.33 16 32 H 0.12 4.30 6.58 -2.39 -0.02 4.29 16 33 H 0.04 2.20 7.11 -2.39 -0.02 2.19 16 34 H 0.02 1.12 6.36 -2.39 -0.02 1.11 16 35 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 36 H 0.41 15.27 6.20 -92.71 -0.58 14.70 16 37 H 0.07 2.32 7.99 -2.39 -0.02 2.30 16 38 H 0.07 2.71 7.80 -2.39 -0.02 2.69 16 39 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.10 2.31 7.87 -2.39 -0.02 2.29 16 41 H 0.15 2.34 7.95 -2.91 -0.02 2.32 16 42 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 43 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 44 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -66.68 381.87 1.48 -65.20 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.42 Total: 34.47 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: 7.15 Total: 24.26 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -5.16 Total: -114.80 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -1.42 Total: -15.94 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.33 kcal Atomic # 16 Polarization: -33.99 SS G_CDS: -1.53 Total: -35.53 kcal Total: -66.68 1.48 -65.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728450364.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.350 kcal (2) G-P(sol) polarization free energy of solvation -66.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds