Wall clock time and date at job start Tue Mar 31 2020 14:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30425 * 125.99506 * 2 1 4 4 N 1.39927 * 108.92236 * 180.02562 * 3 2 1 5 5 C 1.46501 * 125.74527 * 180.26534 * 4 3 2 6 6 C 1.53002 * 109.47059 * 246.15940 * 5 4 3 7 7 C 1.53004 * 109.46882 * 6.16282 * 5 4 3 8 8 C 1.53003 * 109.47042 * 126.16099 * 5 4 3 9 9 C 1.34223 * 108.50997 * 359.97438 * 4 3 2 10 10 C 1.50698 * 126.29436 * 179.97438 * 9 4 3 11 11 C 1.38122 * 107.41088 * 0.02562 * 9 4 3 12 12 C 1.47289 * 126.42734 * 179.97438 * 11 9 4 13 13 O 1.21528 * 119.99970 * 89.99750 * 12 11 9 14 14 O 1.34758 * 119.99889 * 269.99484 * 12 11 9 15 15 C 1.45196 * 116.99980 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47027 * 180.02562 * 15 14 12 17 17 O 1.21286 * 119.99856 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99989 * 180.02562 * 16 15 14 19 19 C 1.37098 * 119.99973 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00116 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99624 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00455 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99684 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47320 * 89.99384 * 23 21 19 25 25 H 1.48503 * 109.46863 * 209.99706 * 23 21 19 26 26 H 1.48500 * 109.46865 * 329.99551 * 23 21 19 27 27 H 1.09001 * 109.46626 * 269.99406 * 1 2 3 28 28 H 1.09000 * 109.47004 * 29.99837 * 1 2 3 29 29 H 1.09000 * 109.46902 * 150.00009 * 1 2 3 30 30 H 1.08998 * 109.46830 * 64.77894 * 6 5 4 31 31 H 1.08998 * 109.46672 * 184.77465 * 6 5 4 32 32 H 1.09000 * 109.47153 * 304.78132 * 6 5 4 33 33 H 1.08992 * 109.47187 * 59.99900 * 7 5 4 34 34 H 1.09002 * 109.46859 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.46511 * 299.99506 * 7 5 4 36 36 H 1.08995 * 109.47330 * 59.99893 * 8 5 4 37 37 H 1.09002 * 109.46942 * 179.97438 * 8 5 4 38 38 H 1.09008 * 109.47037 * 299.99903 * 8 5 4 39 39 H 1.08999 * 109.47380 * 95.17678 * 10 9 4 40 40 H 1.09003 * 109.47427 * 215.17677 * 10 9 4 41 41 H 1.09001 * 109.47641 * 335.17503 * 10 9 4 42 42 H 1.09004 * 109.46905 * 299.99569 * 15 14 12 43 43 H 1.08997 * 109.47523 * 59.99523 * 15 14 12 44 44 H 0.97000 * 119.99776 * 359.97438 * 18 16 15 45 45 H 0.96993 * 119.99897 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0552 0.0000 4 7 3.6112 0.6444 -0.0006 5 6 4.7784 1.5298 0.0047 6 6 5.5384 1.3796 -1.3147 7 6 4.3178 2.9799 0.1659 8 6 5.6980 1.1544 1.1685 9 6 3.6449 -0.6974 -0.0004 10 6 4.8815 -1.5587 -0.0014 11 6 2.3377 -1.1436 -0.0003 12 6 1.8929 -2.5477 -0.0006 13 8 1.7096 -3.1273 1.0518 14 8 1.6890 -3.1897 -1.1677 15 6 1.2506 -4.5718 -1.0921 16 6 1.0769 -5.1207 -2.4848 17 8 1.3002 -4.4161 -3.4464 18 7 0.6725 -6.3941 -2.6617 19 6 0.5140 -6.8932 -3.9287 20 1 0.7128 -6.2660 -4.7850 21 6 0.0965 -8.2059 -4.1110 22 7 -0.1459 -8.9691 -3.0690 23 14 -0.1187 -8.8863 -5.8373 24 1 1.1584 -9.4909 -6.2940 25 1 -1.1828 -9.9222 -5.8320 26 1 -0.5030 -7.7866 -6.7584 27 1 -0.3632 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 4.9122 1.7274 -2.1362 31 1 6.4517 1.9735 -1.2774 32 1 5.7927 0.3312 -1.4702 33 1 3.7764 3.0868 1.1058 34 1 5.1862 3.6387 0.1694 35 1 3.6627 3.2472 -0.6633 36 1 6.0261 0.1213 1.0538 37 1 6.5666 1.8128 1.1722 38 1 5.1565 1.2613 2.1086 39 1 5.1276 -1.8423 1.0219 40 1 4.6990 -2.4558 -0.5931 41 1 5.7123 -1.0011 -0.4337 42 1 1.9974 -5.1613 -0.5601 43 1 0.3008 -4.6231 -0.5598 44 1 0.4935 -6.9574 -1.8925 45 1 -0.4370 -9.8855 -3.1964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731244098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:10 Heat of formation + Delta-G solvation = -53.902672 kcal Electronic energy + Delta-G solvation = -27463.405232 eV Core-core repulsion = 23482.840243 eV Total energy + Delta-G solvation = -3980.564989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.80815 -39.85711 -38.05884 -37.24194 -35.85984 -33.96149 -33.13131 -31.73257 -31.33683 -28.92431 -27.92802 -27.90885 -27.52551 -27.36219 -24.67150 -23.07739 -21.14694 -19.80836 -19.52216 -19.14339 -18.03034 -17.54197 -16.65748 -16.16679 -15.91514 -15.71509 -15.39179 -14.80753 -14.49033 -14.48815 -14.16876 -13.93911 -13.84459 -13.58278 -13.36214 -12.93278 -12.86437 -12.71780 -12.62216 -12.49148 -12.46869 -12.20218 -12.16081 -12.03433 -11.89334 -11.59770 -11.52057 -11.40495 -11.11294 -10.76918 -10.42196 -10.32644 -10.31654 -10.24153 -9.57589 -9.26448 -8.67908 -8.45387 -8.05083 -6.47189 -3.89005 1.54634 2.04131 2.31817 2.32241 3.07846 3.15186 3.25176 3.32151 3.77860 3.99938 4.15743 4.26981 4.29110 4.40400 4.54857 4.65571 4.85107 5.00343 5.04345 5.15519 5.17216 5.18064 5.21396 5.22760 5.27205 5.29868 5.36461 5.46732 5.55824 5.59232 5.62583 5.69035 5.74730 5.75341 5.78499 5.84379 5.93472 6.10478 6.41319 6.69498 6.77532 7.50502 7.53887 7.92730 8.04229 8.52399 9.10295 9.42967 9.93361 10.70165 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022275 B = 0.002503 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.692154 B =11184.332184 C =11472.180849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.121 3.879 3 N -0.292 5.292 4 N -0.347 5.347 5 C 0.178 3.822 6 C -0.168 4.168 7 C -0.141 4.141 8 C -0.170 4.170 9 C 0.142 3.858 10 C -0.109 4.109 11 C -0.264 4.264 12 C 0.546 3.454 13 O -0.506 6.506 14 O -0.318 6.318 15 C 0.057 3.943 16 C 0.440 3.560 17 O -0.575 6.575 18 N -0.554 5.554 19 C -0.301 4.301 20 H 0.106 0.894 21 C 0.024 3.976 22 N -0.898 5.898 23 Si 0.933 3.067 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.268 1.268 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.395 0.605 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.836 19.623 9.892 24.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.046 4.046 3 N -0.113 5.113 4 N -0.127 5.127 5 C 0.096 3.904 6 C -0.226 4.226 7 C -0.199 4.199 8 C -0.228 4.228 9 C 0.011 3.989 10 C -0.167 4.167 11 C -0.277 4.277 12 C 0.388 3.612 13 O -0.394 6.394 14 O -0.232 6.232 15 C -0.020 4.020 16 C 0.225 3.775 17 O -0.458 6.458 18 N -0.192 5.192 19 C -0.430 4.430 20 H 0.123 0.877 21 C -0.178 4.178 22 N -0.539 5.539 23 Si 0.760 3.240 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.193 1.193 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.228 0.772 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.004 21.083 9.535 25.622 hybrid contribution -0.297 -1.845 -0.197 1.879 sum 10.706 19.238 9.339 23.915 Atomic orbital electron populations 1.20297 0.85937 1.04104 1.03420 1.22272 0.96893 0.88478 0.96920 1.77055 0.85812 1.22030 1.26393 1.48502 1.05417 1.03358 1.55455 1.20822 0.82001 0.90567 0.96980 1.22399 1.00703 1.03642 0.95808 1.21889 1.01958 0.92034 1.03996 1.22444 0.99441 1.03496 0.97416 1.21144 0.95581 0.84910 0.97271 1.20872 0.92518 0.99063 1.04240 1.18914 0.92507 0.91156 1.25095 1.20205 0.73398 0.85776 0.81811 1.90823 1.47741 1.67773 1.33064 1.86742 1.77081 1.26585 1.32807 1.22773 1.01121 0.79378 0.98754 1.19334 0.85610 0.83785 0.88817 1.90565 1.55403 1.58418 1.41447 1.41706 1.58512 1.09461 1.09484 1.19718 1.42798 0.95934 0.84570 0.87661 1.25301 0.96880 0.96007 0.99599 1.69612 1.45711 1.08659 1.29873 0.85811 0.78034 0.78639 0.81543 1.20300 1.20827 1.19293 0.89965 0.90110 0.90042 0.91182 0.90037 0.91112 0.91379 0.90860 0.90978 0.90845 0.89940 0.91412 0.89221 0.88951 0.89731 0.89575 0.89481 0.77161 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.28 36.01 0.37 -0.58 16 2 C 0.12 1.78 7.27 -82.01 -0.60 1.19 16 3 N -0.29 -4.07 11.54 33.90 0.39 -3.68 16 4 N -0.35 -4.17 3.43 -44.00 -0.15 -4.32 16 5 C 0.18 1.46 1.06 -131.81 -0.14 1.32 16 6 C -0.17 -1.17 8.54 37.16 0.32 -0.85 16 7 C -0.14 -1.04 7.99 37.16 0.30 -0.74 16 8 C -0.17 -1.05 8.35 37.16 0.31 -0.74 16 9 C 0.14 1.87 6.50 -81.59 -0.53 1.34 16 10 C -0.11 -1.07 8.28 36.00 0.30 -0.77 16 11 C -0.26 -4.18 6.00 -105.08 -0.63 -4.81 16 12 C 0.55 9.76 7.21 34.41 0.25 10.01 16 13 O -0.51 -9.65 16.90 -19.29 -0.33 -9.98 16 14 O -0.32 -6.36 9.77 -47.33 -0.46 -6.82 16 15 C 0.06 1.13 5.95 36.01 0.21 1.34 16 16 C 0.44 10.77 7.86 -10.98 -0.09 10.68 16 17 O -0.57 -16.25 16.08 -14.11 -0.23 -16.47 16 18 N -0.55 -14.13 5.29 -10.97 -0.06 -14.18 16 19 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 20 H 0.11 3.05 7.16 -52.49 -0.38 2.68 16 21 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 22 N -0.90 -24.19 13.05 55.50 0.72 -23.46 16 23 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.03 8.01 -51.93 -0.42 0.62 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.51 5.51 -51.93 -0.29 0.22 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 36 H 0.07 0.43 5.10 -51.93 -0.27 0.17 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.09 0.75 7.97 -51.93 -0.41 0.34 16 40 H 0.09 1.01 8.09 -51.93 -0.42 0.59 16 41 H 0.08 0.61 4.43 -51.93 -0.23 0.38 16 42 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 45 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -34.73 379.38 -6.10 -40.83 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.51 Total: 7.17 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -0.17 Total: 9.43 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.91 Total: -45.65 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -1.01 Total: -33.27 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.73 -6.10 -40.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.077 kcal (2) G-P(sol) polarization free energy of solvation -34.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds