Wall clock time and date at job start Tue Mar 31 2020 14:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30425 * 125.99506 * 2 1 4 4 N 1.39927 * 108.92236 * 180.02562 * 3 2 1 5 5 C 1.46501 * 125.74527 * 180.26534 * 4 3 2 6 6 C 1.53002 * 109.47059 * 246.15940 * 5 4 3 7 7 C 1.53004 * 109.46882 * 6.16282 * 5 4 3 8 8 C 1.53003 * 109.47042 * 126.16099 * 5 4 3 9 9 C 1.34223 * 108.50997 * 359.97438 * 4 3 2 10 10 C 1.50698 * 126.29436 * 179.97438 * 9 4 3 11 11 C 1.38122 * 107.41088 * 0.02562 * 9 4 3 12 12 C 1.47289 * 126.42734 * 179.97438 * 11 9 4 13 13 O 1.21528 * 119.99970 * 89.99750 * 12 11 9 14 14 O 1.34758 * 119.99889 * 269.99484 * 12 11 9 15 15 C 1.45196 * 116.99980 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47027 * 180.02562 * 15 14 12 17 17 O 1.21286 * 119.99856 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99989 * 180.02562 * 16 15 14 19 19 C 1.37098 * 119.99973 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00116 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99624 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00455 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99684 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47320 * 89.99384 * 23 21 19 25 25 H 1.48503 * 109.46863 * 209.99706 * 23 21 19 26 26 H 1.48500 * 109.46865 * 329.99551 * 23 21 19 27 27 H 1.09001 * 109.46626 * 269.99406 * 1 2 3 28 28 H 1.09000 * 109.47004 * 29.99837 * 1 2 3 29 29 H 1.09000 * 109.46902 * 150.00009 * 1 2 3 30 30 H 1.08998 * 109.46830 * 64.77894 * 6 5 4 31 31 H 1.08998 * 109.46672 * 184.77465 * 6 5 4 32 32 H 1.09000 * 109.47153 * 304.78132 * 6 5 4 33 33 H 1.08992 * 109.47187 * 59.99900 * 7 5 4 34 34 H 1.09002 * 109.46859 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.46511 * 299.99506 * 7 5 4 36 36 H 1.08995 * 109.47330 * 59.99893 * 8 5 4 37 37 H 1.09002 * 109.46942 * 179.97438 * 8 5 4 38 38 H 1.09008 * 109.47037 * 299.99903 * 8 5 4 39 39 H 1.08999 * 109.47380 * 95.17678 * 10 9 4 40 40 H 1.09003 * 109.47427 * 215.17677 * 10 9 4 41 41 H 1.09001 * 109.47641 * 335.17503 * 10 9 4 42 42 H 1.09004 * 109.46905 * 299.99569 * 15 14 12 43 43 H 1.08997 * 109.47523 * 59.99523 * 15 14 12 44 44 H 0.97000 * 119.99776 * 359.97438 * 18 16 15 45 45 H 0.96993 * 119.99897 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0552 0.0000 4 7 3.6112 0.6444 -0.0006 5 6 4.7784 1.5298 0.0047 6 6 5.5384 1.3796 -1.3147 7 6 4.3178 2.9799 0.1659 8 6 5.6980 1.1544 1.1685 9 6 3.6449 -0.6974 -0.0004 10 6 4.8815 -1.5587 -0.0014 11 6 2.3377 -1.1436 -0.0003 12 6 1.8929 -2.5477 -0.0006 13 8 1.7096 -3.1273 1.0518 14 8 1.6890 -3.1897 -1.1677 15 6 1.2506 -4.5718 -1.0921 16 6 1.0769 -5.1207 -2.4848 17 8 1.3002 -4.4161 -3.4464 18 7 0.6725 -6.3941 -2.6617 19 6 0.5140 -6.8932 -3.9287 20 1 0.7128 -6.2660 -4.7850 21 6 0.0965 -8.2059 -4.1110 22 7 -0.1459 -8.9691 -3.0690 23 14 -0.1187 -8.8863 -5.8373 24 1 1.1584 -9.4909 -6.2940 25 1 -1.1828 -9.9222 -5.8320 26 1 -0.5030 -7.7866 -6.7584 27 1 -0.3632 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 4.9122 1.7274 -2.1362 31 1 6.4517 1.9735 -1.2774 32 1 5.7927 0.3312 -1.4702 33 1 3.7764 3.0868 1.1058 34 1 5.1862 3.6387 0.1694 35 1 3.6627 3.2472 -0.6633 36 1 6.0261 0.1213 1.0538 37 1 6.5666 1.8128 1.1722 38 1 5.1565 1.2613 2.1086 39 1 5.1276 -1.8423 1.0219 40 1 4.6990 -2.4558 -0.5931 41 1 5.7123 -1.0011 -0.4337 42 1 1.9974 -5.1613 -0.5601 43 1 0.3008 -4.6231 -0.5598 44 1 0.4935 -6.9574 -1.8925 45 1 -0.4370 -9.8855 -3.1964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731244098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:09 Heat of formation + Delta-G solvation = -75.802727 kcal Electronic energy + Delta-G solvation = -27464.354890 eV Core-core repulsion = 23482.840243 eV Total energy + Delta-G solvation = -3981.514646 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.81289 -41.33107 -39.97218 -38.01028 -37.38376 -36.02735 -34.03773 -33.41845 -32.69036 -30.34065 -29.09384 -28.44874 -28.39960 -28.08487 -26.60561 -24.30785 -22.08498 -21.44216 -21.01736 -20.07054 -20.03727 -18.85352 -18.04344 -17.58277 -17.43539 -16.86057 -16.61707 -16.37002 -15.78779 -15.65232 -15.45999 -15.15333 -14.95427 -14.67106 -14.44057 -14.26957 -13.83934 -13.67623 -13.66260 -13.55241 -13.37342 -13.27585 -13.13214 -13.10926 -12.93625 -12.80184 -12.72444 -12.47350 -12.33086 -12.15739 -12.11892 -11.86918 -11.76764 -11.57568 -11.47019 -10.52063 -10.21804 -10.11455 -9.72575 -8.51816 -6.02419 0.52951 0.93404 1.04593 1.27804 1.36268 1.42952 1.55436 1.75027 1.87171 2.31196 3.04651 3.13561 3.28302 3.38703 3.68312 3.71448 3.79318 3.84165 3.87367 4.13434 4.14617 4.20059 4.22570 4.44368 4.51479 4.56275 4.59943 4.62483 4.64622 4.68860 4.78405 4.80244 4.82757 4.89176 4.93575 5.14241 5.20504 5.21943 5.24412 5.37482 5.45341 5.89336 5.91640 6.45689 6.50607 6.61139 7.03401 7.40167 7.94073 8.65257 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022275 B = 0.002503 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.692154 B =11184.332184 C =11472.180849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.107 3.893 3 N -0.306 5.306 4 N -0.340 5.340 5 C 0.164 3.836 6 C -0.166 4.166 7 C -0.138 4.138 8 C -0.167 4.167 9 C 0.149 3.851 10 C -0.110 4.110 11 C -0.308 4.308 12 C 0.557 3.443 13 O -0.521 6.521 14 O -0.337 6.337 15 C 0.067 3.933 16 C 0.438 3.562 17 O -0.618 6.618 18 N -0.557 5.557 19 C -0.337 4.337 20 H 0.083 0.917 21 C -0.008 4.008 22 N -0.915 5.915 23 Si 0.997 3.003 24 H -0.268 1.268 25 H -0.269 1.269 26 H -0.272 1.272 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.105 0.895 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.056 0.944 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.400 0.600 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.449 20.114 10.336 25.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.059 4.059 3 N -0.127 5.127 4 N -0.119 5.119 5 C 0.084 3.916 6 C -0.223 4.223 7 C -0.195 4.195 8 C -0.224 4.224 9 C 0.015 3.985 10 C -0.167 4.167 11 C -0.321 4.321 12 C 0.400 3.600 13 O -0.410 6.410 14 O -0.252 6.252 15 C -0.010 4.010 16 C 0.225 3.775 17 O -0.505 6.505 18 N -0.194 5.194 19 C -0.466 4.466 20 H 0.101 0.899 21 C -0.209 4.209 22 N -0.555 5.555 23 Si 0.820 3.180 24 H -0.194 1.194 25 H -0.194 1.194 26 H -0.196 1.196 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.133 0.867 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.131 0.869 38 H 0.075 0.925 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.235 0.765 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.619 21.583 10.017 26.934 hybrid contribution -0.734 -1.922 -0.302 2.079 sum 11.885 19.662 9.715 24.944 Atomic orbital electron populations 1.20354 0.84822 1.04176 1.04323 1.22632 0.97975 0.88297 0.97019 1.77001 0.86895 1.22011 1.26765 1.48973 1.05702 1.03530 1.53738 1.21355 0.81187 0.90357 0.98726 1.22423 1.01497 1.04107 0.94292 1.21891 1.02876 0.92150 1.02580 1.22468 0.99722 1.04573 0.95674 1.21586 0.95744 0.85680 0.95449 1.21033 0.91976 0.98343 1.05383 1.19078 0.94216 0.90214 1.28612 1.20455 0.72463 0.86206 0.80844 1.90795 1.48580 1.68370 1.33269 1.86746 1.77489 1.26582 1.34388 1.22602 1.03015 0.79888 0.95479 1.20061 0.84021 0.83099 0.90341 1.90530 1.57034 1.59389 1.43544 1.41729 1.58569 1.10006 1.09128 1.19706 1.45225 0.96741 0.84966 0.89868 1.26119 0.95636 0.95571 1.03579 1.69669 1.45132 1.09115 1.31562 0.84866 0.78524 0.77901 0.76676 1.19358 1.19374 1.19636 0.88613 0.88686 0.91230 0.92876 0.86743 0.91277 0.92536 0.87673 0.92678 0.90379 0.86862 0.92482 0.87427 0.90266 0.86891 0.87228 0.87458 0.76505 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.92 10.28 71.24 0.73 -1.19 16 2 C 0.11 3.20 7.27 43.53 0.32 3.52 16 3 N -0.31 -8.54 11.54 -46.65 -0.54 -9.08 16 4 N -0.34 -7.89 3.43 -293.11 -1.01 -8.90 16 5 C 0.16 2.35 1.06 3.61 0.00 2.36 16 6 C -0.17 -1.91 8.54 71.98 0.61 -1.29 16 7 C -0.14 -1.79 7.99 71.98 0.57 -1.21 16 8 C -0.17 -1.56 8.35 71.98 0.60 -0.96 16 9 C 0.15 3.82 6.50 42.17 0.27 4.10 16 10 C -0.11 -2.00 8.28 71.24 0.59 -1.41 16 11 C -0.31 -9.89 6.00 -20.16 -0.12 -10.01 16 12 C 0.56 20.13 7.21 70.20 0.51 20.64 16 13 O -0.52 -19.88 16.90 19.75 0.33 -19.55 16 14 O -0.34 -13.71 9.77 -50.30 -0.49 -14.20 16 15 C 0.07 2.65 5.95 71.24 0.42 3.08 16 16 C 0.44 21.92 7.86 87.66 0.69 22.61 16 17 O -0.62 -36.14 16.08 15.75 0.25 -35.88 16 18 N -0.56 -28.91 5.29 -306.99 -1.62 -30.53 16 19 C -0.34 -19.09 9.68 84.04 0.81 -18.28 16 20 H 0.08 5.00 7.16 -2.91 -0.02 4.98 16 21 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 22 N -0.91 -48.72 13.05 21.66 0.28 -48.44 16 23 Si 1.00 42.22 29.55 68.60 2.03 44.25 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 27 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.07 1.84 8.01 -2.39 -0.02 1.82 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 31 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.82 5.51 -2.39 -0.01 0.81 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.05 0.91 8.11 -2.39 -0.02 0.89 16 36 H 0.08 0.67 5.10 -2.39 -0.01 0.65 16 37 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.11 1.59 7.97 -2.39 -0.02 1.57 16 40 H 0.08 1.69 8.09 -2.39 -0.02 1.67 16 41 H 0.11 1.36 4.43 -2.39 -0.01 1.35 16 42 H 0.11 3.79 8.14 -2.38 -0.02 3.78 16 43 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 44 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16 45 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -76.47 379.38 6.01 -70.46 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: 0.29 Total: 29.89 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: 6.49 Total: 21.98 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -2.88 Total: -96.95 kcal Atomic # 8 Polarization: -69.72 SS G_CDS: 0.10 Total: -69.63 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -76.47 6.01 -70.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.347 kcal (2) G-P(sol) polarization free energy of solvation -76.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds