Wall clock time and date at job start Tue Mar 31 2020 14:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00268 * 2 1 4 4 H 1.48496 * 109.47294 * 272.94768 * 3 2 1 5 5 H 1.48503 * 109.46840 * 32.94502 * 3 2 1 6 6 H 1.48506 * 109.47023 * 152.94704 * 3 2 1 7 7 C 1.38822 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99880 * 339.34258 * 7 2 1 9 9 N 1.36930 * 119.99574 * 159.34077 * 7 2 1 10 10 C 1.46927 * 120.63681 * 332.63140 * 9 7 2 11 11 C 1.53201 * 108.77393 * 233.59024 * 10 9 7 12 12 C 1.53037 * 109.30948 * 305.35845 * 11 10 9 13 13 N 1.46497 * 109.46113 * 181.38849 * 12 11 10 14 14 C 1.34778 * 120.00414 * 154.97549 * 13 12 11 15 15 O 1.21585 * 119.99626 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00095 * 180.02562 * 14 13 12 17 17 N 1.40098 * 119.99777 * 359.97438 * 16 14 13 18 18 C 1.39148 * 119.99709 * 179.97438 * 17 16 14 19 19 C 1.39106 * 119.67814 * 180.02562 * 18 17 16 20 20 C 1.38310 * 119.12126 * 179.97438 * 19 18 17 21 21 C 1.39038 * 118.48613 * 359.97438 * 20 19 18 22 22 F 1.35105 * 120.36285 * 179.97438 * 21 20 19 23 23 C 1.38220 * 119.28024 * 359.97438 * 21 20 19 24 24 N 1.31990 * 120.82538 * 0.02562 * 23 21 20 25 25 C 1.53042 * 109.52691 * 61.37623 * 12 11 10 26 26 C 1.46923 * 120.62784 * 152.60686 * 9 7 2 27 27 H 0.96998 * 119.99746 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.59253 * 113.80014 * 10 9 7 29 29 H 1.09002 * 109.70228 * 353.43998 * 10 9 7 30 30 H 1.08994 * 109.49263 * 185.40909 * 11 10 9 31 31 H 1.08995 * 109.49736 * 65.31472 * 11 10 9 32 32 H 1.08995 * 109.46438 * 301.35944 * 12 11 10 33 33 H 0.97004 * 119.99712 * 334.97064 * 13 12 11 34 34 H 0.96992 * 119.99917 * 179.97438 * 16 14 13 35 35 H 0.96998 * 120.00738 * 0.02562 * 17 16 14 36 36 H 1.08000 * 120.43821 * 0.27309 * 19 18 17 37 37 H 1.07997 * 120.75787 * 180.02562 * 20 19 18 38 38 H 1.08004 * 119.58411 * 179.97438 * 23 21 20 39 39 H 1.09000 * 109.49726 * 58.57863 * 25 12 11 40 40 H 1.09006 * 109.50041 * 178.67540 * 25 12 11 41 41 H 1.09000 * 109.58994 * 246.19723 * 26 9 7 42 42 H 1.09002 * 109.59003 * 6.48072 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4355 2.0824 -1.3982 5 1 1.4803 2.6338 0.7614 6 1 3.5777 1.4228 0.6368 7 6 2.0103 -1.2023 -0.0005 8 1 1.5223 -2.1075 0.3290 9 7 3.3135 -1.2402 -0.4190 10 6 3.8173 -0.2585 -1.3891 11 6 4.4621 -1.0079 -2.5594 12 6 5.5288 -1.9644 -2.0216 13 7 6.1706 -2.6587 -3.1406 14 6 7.4212 -3.1427 -3.0054 15 8 8.0169 -3.0026 -1.9548 16 7 8.0118 -3.7810 -4.0351 17 7 7.3255 -3.9419 -5.2458 18 6 7.9354 -4.6004 -6.3091 19 6 7.2480 -4.7560 -7.5084 20 6 7.8655 -5.4120 -8.5579 21 6 9.1569 -5.8925 -8.3718 22 9 9.7955 -6.5393 -9.3713 23 6 9.7802 -5.7011 -7.1530 24 7 9.1648 -5.0709 -6.1701 25 6 4.8748 -2.9901 -1.0929 26 6 4.2349 -2.2631 0.0941 27 1 -0.4850 0.8400 0.0004 28 1 4.5597 0.3802 -0.9108 29 1 2.9923 0.3520 -1.7563 30 1 4.9245 -0.2922 -3.2391 31 1 3.6994 -1.5758 -3.0921 32 1 6.2779 -1.3987 -1.4677 33 1 5.6954 -2.7702 -3.9789 34 1 8.9119 -4.1290 -3.9379 35 1 6.4254 -3.5936 -5.3432 36 1 6.2474 -4.3655 -7.6202 37 1 7.3565 -5.5472 -9.5008 38 1 10.7832 -6.0727 -7.0029 39 1 4.1082 -3.5392 -1.6396 40 1 5.6311 -3.6854 -0.7286 41 1 5.0115 -1.7879 0.6935 42 1 3.6844 -2.9759 0.7082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731363469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:23 Heat of formation + Delta-G solvation = 38.564564 kcal Electronic energy + Delta-G solvation = -26550.773482 eV Core-core repulsion = 22483.050619 eV Total energy + Delta-G solvation = -4067.722863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.20780 -40.89900 -40.10138 -37.91079 -36.57689 -34.66938 -33.02002 -32.53431 -31.90077 -30.48818 -29.95201 -28.61576 -25.14896 -24.46397 -23.34866 -23.02637 -22.21438 -20.92658 -19.99378 -19.03896 -19.01023 -17.91811 -17.37552 -16.83238 -16.33697 -16.17230 -15.66917 -15.57859 -15.05025 -14.86615 -14.49102 -14.37523 -14.21624 -14.19443 -13.91031 -13.84597 -13.23397 -12.99903 -12.96204 -12.46293 -12.11809 -12.01995 -11.82790 -11.07932 -10.87386 -10.62109 -10.52808 -10.47987 -10.34348 -10.16634 -10.12386 -9.83015 -9.72830 -9.50946 -8.98097 -8.67416 -7.84802 -7.03508 -5.98610 -3.34666 0.54226 0.66894 1.56268 2.77268 2.97970 3.21539 3.27607 3.46506 3.49501 3.64999 3.80110 4.21340 4.32206 4.46414 4.49213 4.87572 4.91464 5.04258 5.11830 5.27641 5.33941 5.35850 5.44196 5.59287 5.76226 5.81678 5.97306 5.99546 6.09362 6.17984 6.24572 6.33580 6.50965 6.56359 6.59508 6.63711 6.72514 6.91268 6.94481 7.37243 7.92016 7.93112 8.29318 8.37892 8.89913 9.67951 10.05287 11.17299 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.027416 B = 0.002264 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.058375 B =12365.277416 C =12804.613693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.022 3.978 3 Si 0.882 3.118 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.259 4.259 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.129 3.871 11 C -0.141 4.141 12 C 0.167 3.833 13 N -0.737 5.737 14 C 0.711 3.289 15 O -0.571 6.571 16 N -0.530 5.530 17 N -0.520 5.520 18 C 0.400 3.600 19 C -0.202 4.202 20 C -0.057 4.057 21 C -0.017 4.017 22 F -0.136 7.136 23 C 0.134 3.866 24 N -0.520 5.520 25 C -0.142 4.142 26 C 0.150 3.850 27 H 0.263 0.737 28 H 0.028 0.972 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.386 0.614 34 H 0.441 0.559 35 H 0.432 0.568 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.170 0.830 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.026 0.974 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.546 -10.240 -18.678 26.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.177 4.177 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.231 1.231 6 H -0.194 1.194 7 C -0.388 4.388 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.181 4.181 12 C 0.063 3.937 13 N -0.392 5.392 14 C 0.410 3.590 15 O -0.444 6.444 16 N -0.286 5.286 17 N -0.253 5.253 18 C 0.163 3.837 19 C -0.228 4.228 20 C -0.083 4.083 21 C -0.042 4.042 22 F -0.115 7.115 23 C -0.025 4.025 24 N -0.238 5.238 25 C -0.183 4.183 26 C 0.024 3.976 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.220 0.780 34 H 0.286 0.714 35 H 0.277 0.723 36 H 0.165 0.835 37 H 0.168 0.832 38 H 0.187 0.813 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.176 -9.813 -16.830 25.973 hybrid contribution -0.183 0.656 -1.540 1.684 sum 16.993 -9.158 -18.370 26.647 Atomic orbital electron populations 1.69837 1.05725 1.26571 1.52950 1.25298 0.95251 0.97587 0.99526 0.86975 0.80161 0.84669 0.76995 1.21659 1.23089 1.19448 1.18927 0.84893 0.94799 1.40151 0.89615 1.44407 1.08725 1.33309 1.46518 1.21307 0.97332 0.92044 0.89014 1.22369 0.97381 0.98383 0.99937 1.20955 0.94139 0.92746 0.85857 1.45520 1.14405 1.61627 1.17641 1.15786 0.82073 0.78654 0.82508 1.91037 1.64642 1.63617 1.25114 1.44593 1.18112 1.63341 1.02573 1.43155 1.16077 1.62591 1.03440 1.18201 0.89426 0.90285 0.85768 1.21095 1.02715 1.07077 0.91944 1.21361 0.92829 0.94362 0.99774 1.18434 0.93638 1.04032 0.88058 1.91505 1.81412 1.79403 1.59152 1.22510 0.99788 0.93591 0.86632 1.67095 1.08816 1.15296 1.32574 1.22413 0.99427 0.98044 0.98375 1.20905 0.92359 0.91361 0.92994 0.92751 0.95374 0.90434 0.92190 0.91140 0.89580 0.77999 0.71354 0.72345 0.83537 0.83215 0.81335 0.91871 0.92087 0.95580 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.31 13.97 55.49 0.78 -26.53 16 2 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 3 Si 0.88 21.89 24.34 -169.99 -4.14 17.75 16 4 H -0.29 -6.83 6.62 56.52 0.37 -6.45 16 5 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.27 -6.62 6.63 56.52 0.37 -6.25 16 7 C -0.26 -7.07 10.04 -15.06 -0.15 -7.22 16 8 H 0.09 2.50 8.05 -52.49 -0.42 2.08 16 9 N -0.61 -13.93 2.77 -172.31 -0.48 -14.40 16 10 C 0.13 2.68 4.20 -3.71 -0.02 2.66 16 11 C -0.14 -2.22 5.55 -26.61 -0.15 -2.37 16 12 C 0.17 2.55 2.42 -67.89 -0.16 2.38 16 13 N -0.74 -8.89 5.04 -58.64 -0.30 -9.19 16 14 C 0.71 9.59 8.64 -86.92 -0.75 8.84 16 15 O -0.57 -10.07 16.84 5.29 0.09 -9.98 16 16 N -0.53 -5.60 6.29 27.63 0.17 -5.42 16 17 N -0.52 -4.04 6.42 31.14 0.20 -3.84 16 18 C 0.40 3.13 7.59 -154.92 -1.18 1.96 16 19 C -0.20 -1.14 9.94 -39.23 -0.39 -1.53 16 20 C -0.06 -0.32 10.15 -39.26 -0.40 -0.72 16 21 C -0.02 -0.12 7.34 -39.29 -0.29 -0.41 16 22 F -0.14 -1.07 17.28 2.25 0.04 -1.03 16 23 C 0.13 0.97 11.16 -17.49 -0.20 0.78 16 24 N -0.52 -4.58 9.37 -12.36 -0.12 -4.69 16 25 C -0.14 -2.35 5.65 -26.61 -0.15 -2.50 16 26 C 0.15 2.94 6.52 -3.71 -0.02 2.92 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.03 0.59 7.07 -51.93 -0.37 0.22 16 29 H 0.08 1.75 4.50 -51.93 -0.23 1.52 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.09 1.47 7.57 -51.93 -0.39 1.08 16 33 H 0.39 3.46 6.52 -40.82 -0.27 3.19 16 34 H 0.44 4.75 8.05 -182.61 -1.47 3.28 16 35 H 0.43 2.39 6.70 -182.60 -1.22 1.17 16 36 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 37 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 38 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -33.50 346.71 -9.83 -43.33 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.36 Total: 3.46 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -3.94 Total: 5.33 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: 0.26 Total: -64.08 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.14 Total: 17.75 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.50 -9.83 -43.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731363469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.892 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds